Wall clock time and date at job start Wed Apr 1 2020 04:55:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 109.47008 * 2 1 4 4 O 1.42900 * 109.46967 * 240.00668 * 2 1 3 5 5 C 1.35676 * 117.00228 * 90.00065 * 4 2 1 6 6 C 1.38922 * 119.68298 * 180.02562 * 5 4 2 7 7 C 1.38380 * 119.11001 * 179.97438 * 6 5 4 8 8 C 1.38829 * 118.48477 * 0.02562 * 7 6 5 9 9 C 1.38043 * 119.28775 * 0.25231 * 8 7 6 10 10 N 1.31968 * 120.83596 * 359.45492 * 9 8 7 11 11 C 1.50703 * 109.47574 * 120.00114 * 2 1 3 12 12 O 1.21281 * 119.99685 * 119.99672 * 11 2 1 13 13 N 1.34768 * 120.00036 * 300.00417 * 11 2 1 14 14 C 1.46502 * 120.00217 * 359.97438 * 13 11 2 15 15 C 1.46501 * 119.99983 * 179.97438 * 13 11 2 16 16 C 1.53000 * 109.47191 * 239.99925 * 15 13 11 17 17 C 1.52998 * 109.47087 * 180.02562 * 16 15 13 18 18 C 1.53000 * 109.47566 * 59.99626 * 17 16 15 19 19 N 1.46501 * 109.47192 * 180.02562 * 18 17 16 20 20 C 1.36935 * 119.99817 * 275.00555 * 19 18 17 21 21 H 1.08001 * 120.00323 * 359.97438 * 20 19 18 22 22 C 1.38810 * 119.99934 * 180.02562 * 20 19 18 23 23 N 1.31617 * 120.00206 * 179.97438 * 22 20 19 24 24 Si 1.86803 * 119.99976 * 359.97438 * 22 20 19 25 25 H 1.48500 * 109.47005 * 90.00371 * 24 22 20 26 26 H 1.48497 * 109.47356 * 210.00345 * 24 22 20 27 27 H 1.48498 * 109.46946 * 330.00668 * 24 22 20 28 28 C 1.52994 * 109.46997 * 300.00483 * 18 17 16 29 29 C 1.52994 * 109.47556 * 59.99878 * 28 18 17 30 30 H 1.08999 * 109.47334 * 59.99532 * 1 2 3 31 31 H 1.09001 * 109.47008 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.46873 * 299.99378 * 1 2 3 33 33 H 1.08002 * 120.44550 * 359.97438 * 6 5 4 34 34 H 1.08002 * 120.75560 * 180.02562 * 7 6 5 35 35 H 1.08002 * 120.35145 * 179.97438 * 8 7 6 36 36 H 1.08003 * 119.57882 * 179.72181 * 9 8 7 37 37 H 1.08995 * 109.47380 * 89.99775 * 14 13 11 38 38 H 1.09001 * 109.47218 * 210.00175 * 14 13 11 39 39 H 1.09005 * 109.47036 * 330.00259 * 14 13 11 40 40 H 1.09000 * 109.47241 * 359.97438 * 15 13 11 41 41 H 1.09000 * 109.46911 * 300.00059 * 16 15 13 42 42 H 1.08999 * 109.47215 * 59.99727 * 16 15 13 43 43 H 1.09000 * 109.46971 * 299.99628 * 17 16 15 44 44 H 1.09003 * 109.47173 * 180.02562 * 17 16 15 45 45 H 1.09004 * 109.46478 * 60.00061 * 18 17 16 46 46 H 0.97002 * 119.99659 * 94.99966 * 19 18 17 47 47 H 0.97008 * 120.00038 * 179.97438 * 23 22 20 48 48 H 1.09004 * 109.47161 * 299.99159 * 28 18 17 49 49 H 1.08999 * 109.46989 * 180.02562 * 28 18 17 50 50 H 1.08999 * 109.47687 * 180.02562 * 29 28 18 51 51 H 1.09000 * 109.47271 * 59.99955 * 29 28 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0063 -0.6735 -1.1669 5 6 2.2116 0.0831 -2.2742 6 6 2.6736 -0.5147 -3.4399 7 6 2.8784 0.2681 -4.5625 8 6 2.6130 1.6282 -4.4786 9 6 2.1613 2.1558 -3.2856 10 7 1.9701 1.3826 -2.2334 11 6 2.0324 -0.7104 1.2304 12 8 2.7297 -1.6965 1.1190 13 7 1.7069 -0.2501 2.4545 14 6 0.8650 0.9413 2.5891 15 6 2.1949 -0.9410 3.6506 16 6 1.0046 -1.4216 4.4833 17 6 1.5143 -2.1427 5.7327 18 6 2.3642 -1.1810 6.5656 19 7 2.8527 -1.8717 7.7617 20 6 2.0676 -1.9398 8.8816 21 1 1.0885 -1.4840 8.8832 22 6 2.5306 -2.5937 10.0151 23 7 1.7763 -2.6588 11.0916 24 14 4.2244 -3.3815 10.0125 25 1 5.2310 -2.3925 10.4751 26 1 4.2267 -4.5535 10.9243 27 1 4.5622 -3.8245 8.6360 28 6 3.5544 -0.7004 5.7329 29 6 3.0448 0.0207 4.4835 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5137 0.8901 33 1 2.8703 -1.5763 -3.4697 34 1 3.2366 -0.1690 -5.4828 35 1 2.7627 2.2674 -5.3362 36 1 1.9576 3.2140 -3.2138 37 1 -0.1831 0.6438 2.6222 38 1 1.1228 1.4665 3.5087 39 1 1.0287 1.6001 1.7362 40 1 2.7998 -1.7978 3.3539 41 1 0.3993 -0.5651 4.7800 42 1 0.3989 -2.1064 3.8898 43 1 2.1198 -2.9992 5.4364 44 1 0.6663 -2.4855 6.3257 45 1 1.7586 -0.3245 6.8620 46 1 3.7322 -2.2808 7.7603 47 1 2.0997 -3.1161 11.8836 48 1 4.1600 -1.5569 5.4366 49 1 4.1602 -0.0157 6.3265 50 1 3.8927 0.3627 3.8901 51 1 2.4393 0.8772 4.7799 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001570665880.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:55:58 Heat of formation + Delta-G solvation = -16.981720 kcal Electronic energy + Delta-G solvation = -30627.009451 eV Core-core repulsion = 26527.426289 eV Total energy + Delta-G solvation = -4099.583163 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.23918 -40.34215 -38.61695 -37.64665 -35.68994 -33.81809 -32.92490 -32.31208 -31.03329 -30.49970 -30.32231 -28.03931 -27.20240 -25.13939 -24.09729 -23.61486 -22.81970 -22.37267 -21.05893 -19.65607 -19.41061 -18.93502 -17.62496 -17.33821 -16.91084 -16.41358 -16.22626 -16.09511 -15.42701 -15.06699 -14.93031 -14.53634 -14.22930 -14.13412 -13.94535 -13.63627 -13.54093 -13.43793 -13.05552 -12.93463 -12.85696 -12.61906 -12.45417 -12.31696 -12.22820 -11.94794 -11.85892 -11.70216 -11.47467 -10.97630 -10.85417 -10.80141 -10.65805 -10.38801 -10.27804 -10.15492 -10.05284 -9.80109 -9.72682 -9.55703 -8.92212 -8.89034 -8.72449 -7.24619 -5.75513 -3.10590 0.72469 0.83116 2.18092 2.40657 3.10348 3.35539 3.39669 3.43322 3.47391 3.82716 4.12337 4.42059 4.54564 4.60718 4.61124 4.62484 4.74406 4.77751 4.84596 4.87224 4.94479 5.10252 5.16672 5.23576 5.27755 5.32715 5.38556 5.46256 5.50869 5.52015 5.59296 5.60651 5.73844 5.75993 5.76402 5.80670 5.94554 5.98052 6.13119 6.19200 6.20197 6.29233 6.46061 6.51559 6.60638 6.83063 6.88834 7.03539 7.17975 7.40316 7.96850 8.01153 8.43873 9.22808 9.95744 10.15853 11.42845 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.030004 B = 0.001870 C = 0.001836 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 932.990221 B =14972.404785 C =15250.338746 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.075 3.925 3 H 0.114 0.886 4 O -0.276 6.276 5 C 0.325 3.675 6 C -0.188 4.188 7 C -0.040 4.040 8 C -0.215 4.215 9 C 0.140 3.860 10 N -0.544 5.544 11 C 0.515 3.485 12 O -0.521 6.521 13 N -0.603 5.603 14 C 0.066 3.934 15 C 0.140 3.860 16 C -0.121 4.121 17 C -0.133 4.133 18 C 0.183 3.817 19 N -0.750 5.750 20 C -0.241 4.241 21 H 0.090 0.910 22 C 0.003 3.997 23 N -0.935 5.935 24 Si 0.884 3.116 25 H -0.285 1.285 26 H -0.292 1.292 27 H -0.277 1.277 28 C -0.125 4.125 29 C -0.119 4.119 30 H 0.072 0.928 31 H 0.069 0.931 32 H 0.090 0.910 33 H 0.143 0.857 34 H 0.141 0.859 35 H 0.137 0.863 36 H 0.160 0.840 37 H 0.064 0.936 38 H 0.081 0.919 39 H 0.072 0.928 40 H 0.101 0.899 41 H 0.063 0.937 42 H 0.058 0.942 43 H 0.056 0.944 44 H 0.070 0.930 45 H 0.055 0.945 46 H 0.361 0.639 47 H 0.259 0.741 48 H 0.060 0.940 49 H 0.068 0.932 50 H 0.060 0.940 51 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.519 12.196 -32.903 35.123 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.015 3.985 3 H 0.132 0.868 4 O -0.182 6.182 5 C 0.146 3.854 6 C -0.209 4.209 7 C -0.065 4.065 8 C -0.236 4.236 9 C -0.015 4.015 10 N -0.268 5.268 11 C 0.301 3.699 12 O -0.396 6.396 13 N -0.337 5.337 14 C -0.076 4.076 15 C 0.038 3.962 16 C -0.160 4.160 17 C -0.174 4.174 18 C 0.073 3.927 19 N -0.391 5.391 20 C -0.371 4.371 21 H 0.108 0.892 22 C -0.192 4.192 23 N -0.583 5.583 24 Si 0.714 3.286 25 H -0.211 1.211 26 H -0.218 1.218 27 H -0.203 1.203 28 C -0.164 4.164 29 C -0.158 4.158 30 H 0.091 0.909 31 H 0.088 0.912 32 H 0.108 0.892 33 H 0.161 0.839 34 H 0.159 0.841 35 H 0.155 0.845 36 H 0.177 0.823 37 H 0.082 0.918 38 H 0.100 0.900 39 H 0.090 0.910 40 H 0.119 0.881 41 H 0.082 0.918 42 H 0.077 0.923 43 H 0.074 0.926 44 H 0.089 0.911 45 H 0.073 0.927 46 H 0.193 0.807 47 H 0.069 0.931 48 H 0.079 0.921 49 H 0.087 0.913 50 H 0.079 0.921 51 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -1.597 11.748 -31.933 34.062 hybrid contribution 1.323 -0.756 -0.588 1.634 sum -0.274 10.991 -32.520 34.329 Atomic orbital electron populations 1.22425 0.92416 1.04031 1.04461 1.22065 0.95852 0.97850 0.82694 0.86840 1.86391 1.79757 1.34410 1.17616 1.19906 0.91034 0.87398 0.87056 1.21124 1.06036 1.02371 0.91381 1.21442 0.93958 0.93455 0.97677 1.21994 1.05344 0.96232 0.99984 1.22428 0.92579 0.99201 0.87339 1.67253 1.21992 1.04737 1.32790 1.20206 0.80698 0.84818 0.84169 1.90735 1.37173 1.25678 1.86051 1.47838 1.51316 1.29235 1.05355 1.22061 0.94844 0.87189 1.03553 1.21299 0.96031 0.95801 0.83070 1.21855 0.96745 1.00471 0.96919 1.22203 1.01125 0.99331 0.94720 1.20203 0.92723 0.93640 0.86120 1.42803 1.18452 1.66664 1.11218 1.19074 0.99392 1.29774 0.88889 0.89230 1.24669 0.97844 1.00742 0.95966 1.69702 1.36951 1.48296 1.03329 0.86558 0.85627 0.79260 0.77153 1.21142 1.21814 1.20284 1.21808 0.99068 1.00174 0.95331 1.21804 0.99128 0.98394 0.96469 0.90916 0.91233 0.89181 0.83895 0.84073 0.84504 0.82295 0.91757 0.90040 0.90955 0.88087 0.91815 0.92350 0.92561 0.91143 0.92680 0.80677 0.93119 0.92121 0.91341 0.92083 0.91472 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.46 9.17 37.16 0.34 -1.11 16 2 C 0.08 0.81 2.10 -27.88 -0.06 0.75 16 3 H 0.11 1.11 6.24 -51.93 -0.32 0.78 16 4 O -0.28 -3.46 9.29 -38.64 -0.36 -3.82 16 5 C 0.32 3.44 7.45 -17.12 -0.13 3.31 16 6 C -0.19 -1.60 10.04 -39.28 -0.39 -1.99 16 7 C -0.04 -0.24 10.17 -39.31 -0.40 -0.64 16 8 C -0.22 -1.16 10.11 -39.43 -0.40 -1.56 16 9 C 0.14 0.92 11.18 -17.56 -0.20 0.73 16 10 N -0.54 -5.09 8.65 -13.33 -0.12 -5.21 16 11 C 0.51 6.87 7.15 -10.99 -0.08 6.79 16 12 O -0.52 -9.20 15.83 -14.35 -0.23 -9.43 16 13 N -0.60 -6.84 2.76 -173.93 -0.48 -7.32 16 14 C 0.07 0.50 7.86 59.85 0.47 0.97 16 15 C 0.14 1.85 2.52 -67.93 -0.17 1.67 16 16 C -0.12 -1.64 5.20 -26.73 -0.14 -1.78 16 17 C -0.13 -2.28 5.50 -26.73 -0.15 -2.42 16 18 C 0.18 3.39 2.77 -67.93 -0.19 3.20 16 19 N -0.75 -17.57 4.92 -53.43 -0.26 -17.83 16 20 C -0.24 -6.75 10.41 -15.06 -0.16 -6.90 16 21 H 0.09 2.67 8.06 -52.49 -0.42 2.25 16 22 C 0.00 0.10 5.50 -17.43 -0.10 0.00 16 23 N -0.93 -29.37 13.97 55.49 0.78 -28.59 16 24 Si 0.88 22.31 27.74 -169.99 -4.71 17.60 16 25 H -0.28 -7.13 7.11 56.52 0.40 -6.73 16 26 H -0.29 -7.49 7.11 56.52 0.40 -7.08 16 27 H -0.28 -6.63 6.52 56.52 0.37 -6.26 16 28 C -0.12 -1.92 5.39 -26.74 -0.14 -2.07 16 29 C -0.12 -1.50 5.18 -26.73 -0.14 -1.64 16 30 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.09 0.57 4.53 -51.93 -0.24 0.34 16 33 H 0.14 1.08 8.06 -52.49 -0.42 0.66 16 34 H 0.14 0.44 8.06 -52.49 -0.42 0.02 16 35 H 0.14 0.37 8.06 -52.49 -0.42 -0.05 16 36 H 0.16 0.58 8.06 -52.48 -0.42 0.16 16 37 H 0.06 0.41 6.95 -51.93 -0.36 0.05 16 38 H 0.08 0.58 6.42 -51.93 -0.33 0.24 16 39 H 0.07 0.42 6.01 -51.93 -0.31 0.11 16 40 H 0.10 1.59 6.90 -51.93 -0.36 1.23 16 41 H 0.06 0.79 7.67 -51.93 -0.40 0.39 16 42 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 43 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 44 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 45 H 0.06 1.05 8.08 -51.93 -0.42 0.63 16 46 H 0.36 8.41 5.66 -40.82 -0.23 8.18 16 47 H 0.26 7.77 8.31 -40.82 -0.34 7.43 16 48 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 49 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 50 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 51 H 0.07 0.76 6.66 -51.93 -0.35 0.41 16 LS Contribution 400.47 15.07 6.04 6.04 Total: -1.00 -35.45 400.47 -9.36 -44.81 By element: Atomic # 1 Polarization: 14.43 SS G_CDS: -7.98 Total: 6.45 kcal Atomic # 6 Polarization: -0.66 SS G_CDS: -2.02 Total: -2.68 kcal Atomic # 7 Polarization: -58.87 SS G_CDS: -0.08 Total: -58.95 kcal Atomic # 8 Polarization: -12.67 SS G_CDS: -0.59 Total: -13.25 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -4.71 Total: 17.60 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -35.45 -9.36 -44.81 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570665880.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.824 kcal (2) G-P(sol) polarization free energy of solvation -35.449 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.624 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.357 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.806 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds