Wall clock time and date at job start Wed Apr 1 2020 04:55:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 109.47008 * 2 1 4 4 O 1.42900 * 109.46967 * 240.00668 * 2 1 3 5 5 C 1.35676 * 117.00228 * 90.00065 * 4 2 1 6 6 C 1.38922 * 119.68298 * 180.02562 * 5 4 2 7 7 C 1.38380 * 119.11001 * 179.97438 * 6 5 4 8 8 C 1.38829 * 118.48477 * 0.02562 * 7 6 5 9 9 C 1.38043 * 119.28775 * 0.25231 * 8 7 6 10 10 N 1.31968 * 120.83596 * 359.45492 * 9 8 7 11 11 C 1.50703 * 109.47574 * 120.00114 * 2 1 3 12 12 O 1.21281 * 119.99685 * 119.99672 * 11 2 1 13 13 N 1.34768 * 120.00036 * 300.00417 * 11 2 1 14 14 C 1.46502 * 120.00217 * 359.97438 * 13 11 2 15 15 C 1.46501 * 119.99983 * 179.97438 * 13 11 2 16 16 C 1.53000 * 109.47191 * 239.99925 * 15 13 11 17 17 C 1.52998 * 109.47087 * 180.02562 * 16 15 13 18 18 C 1.53000 * 109.47566 * 59.99626 * 17 16 15 19 19 N 1.46501 * 109.47192 * 180.02562 * 18 17 16 20 20 C 1.36935 * 119.99817 * 275.00555 * 19 18 17 21 21 H 1.08001 * 120.00323 * 359.97438 * 20 19 18 22 22 C 1.38810 * 119.99934 * 180.02562 * 20 19 18 23 23 N 1.31617 * 120.00206 * 179.97438 * 22 20 19 24 24 Si 1.86803 * 119.99976 * 359.97438 * 22 20 19 25 25 H 1.48500 * 109.47005 * 90.00371 * 24 22 20 26 26 H 1.48497 * 109.47356 * 210.00345 * 24 22 20 27 27 H 1.48498 * 109.46946 * 330.00668 * 24 22 20 28 28 C 1.52994 * 109.46997 * 300.00483 * 18 17 16 29 29 C 1.52994 * 109.47556 * 59.99878 * 28 18 17 30 30 H 1.08999 * 109.47334 * 59.99532 * 1 2 3 31 31 H 1.09001 * 109.47008 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.46873 * 299.99378 * 1 2 3 33 33 H 1.08002 * 120.44550 * 359.97438 * 6 5 4 34 34 H 1.08002 * 120.75560 * 180.02562 * 7 6 5 35 35 H 1.08002 * 120.35145 * 179.97438 * 8 7 6 36 36 H 1.08003 * 119.57882 * 179.72181 * 9 8 7 37 37 H 1.08995 * 109.47380 * 89.99775 * 14 13 11 38 38 H 1.09001 * 109.47218 * 210.00175 * 14 13 11 39 39 H 1.09005 * 109.47036 * 330.00259 * 14 13 11 40 40 H 1.09000 * 109.47241 * 359.97438 * 15 13 11 41 41 H 1.09000 * 109.46911 * 300.00059 * 16 15 13 42 42 H 1.08999 * 109.47215 * 59.99727 * 16 15 13 43 43 H 1.09000 * 109.46971 * 299.99628 * 17 16 15 44 44 H 1.09003 * 109.47173 * 180.02562 * 17 16 15 45 45 H 1.09004 * 109.46478 * 60.00061 * 18 17 16 46 46 H 0.97002 * 119.99659 * 94.99966 * 19 18 17 47 47 H 0.97008 * 120.00038 * 179.97438 * 23 22 20 48 48 H 1.09004 * 109.47161 * 299.99159 * 28 18 17 49 49 H 1.08999 * 109.46989 * 180.02562 * 28 18 17 50 50 H 1.08999 * 109.47687 * 180.02562 * 29 28 18 51 51 H 1.09000 * 109.47271 * 59.99955 * 29 28 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0063 -0.6735 -1.1669 5 6 2.2116 0.0831 -2.2742 6 6 2.6736 -0.5147 -3.4399 7 6 2.8784 0.2681 -4.5625 8 6 2.6130 1.6282 -4.4786 9 6 2.1613 2.1558 -3.2856 10 7 1.9701 1.3826 -2.2334 11 6 2.0324 -0.7104 1.2304 12 8 2.7297 -1.6965 1.1190 13 7 1.7069 -0.2501 2.4545 14 6 0.8650 0.9413 2.5891 15 6 2.1949 -0.9410 3.6506 16 6 1.0046 -1.4216 4.4833 17 6 1.5143 -2.1427 5.7327 18 6 2.3642 -1.1810 6.5656 19 7 2.8527 -1.8717 7.7617 20 6 2.0676 -1.9398 8.8816 21 1 1.0885 -1.4840 8.8832 22 6 2.5306 -2.5937 10.0151 23 7 1.7763 -2.6588 11.0916 24 14 4.2244 -3.3815 10.0125 25 1 5.2310 -2.3925 10.4751 26 1 4.2267 -4.5535 10.9243 27 1 4.5622 -3.8245 8.6360 28 6 3.5544 -0.7004 5.7329 29 6 3.0448 0.0207 4.4835 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5137 0.8901 33 1 2.8703 -1.5763 -3.4697 34 1 3.2366 -0.1690 -5.4828 35 1 2.7627 2.2674 -5.3362 36 1 1.9576 3.2140 -3.2138 37 1 -0.1831 0.6438 2.6222 38 1 1.1228 1.4665 3.5087 39 1 1.0287 1.6001 1.7362 40 1 2.7998 -1.7978 3.3539 41 1 0.3993 -0.5651 4.7800 42 1 0.3989 -2.1064 3.8898 43 1 2.1198 -2.9992 5.4364 44 1 0.6663 -2.4855 6.3257 45 1 1.7586 -0.3245 6.8620 46 1 3.7322 -2.2808 7.7603 47 1 2.0997 -3.1161 11.8836 48 1 4.1600 -1.5569 5.4366 49 1 4.1602 -0.0157 6.3265 50 1 3.8927 0.3627 3.8901 51 1 2.4393 0.8772 4.7799 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001570665880.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:55:57 Heat of formation + Delta-G solvation = -40.549507 kcal Electronic energy + Delta-G solvation = -30628.031427 eV Core-core repulsion = 26527.426289 eV Total energy + Delta-G solvation = -4100.605139 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.99024 -41.18701 -39.65051 -38.62785 -36.95115 -35.37308 -33.63017 -33.39561 -32.56469 -31.73640 -31.00558 -29.39390 -28.03262 -26.02925 -25.19234 -24.49136 -23.83757 -23.61825 -22.36299 -21.00310 -20.39850 -19.64074 -19.52931 -18.21032 -17.78915 -17.20511 -16.95174 -16.79207 -16.71458 -16.38191 -16.03035 -15.47011 -15.41036 -15.12666 -14.97761 -14.78370 -14.56404 -14.38122 -14.32403 -14.04609 -13.87091 -13.72117 -13.47514 -13.39739 -13.15573 -13.13207 -12.90541 -12.80748 -12.47006 -12.41317 -12.19947 -12.12647 -12.04208 -11.96302 -11.78112 -11.52624 -11.15562 -10.92271 -10.89964 -10.78702 -10.58937 -9.71135 -9.49874 -9.29238 -8.01172 -5.33448 0.20087 0.31857 1.34676 1.37961 1.39960 1.44614 1.47263 2.31909 2.48837 2.82286 3.25693 3.29892 3.31268 3.56750 3.73007 3.82281 3.86363 3.92955 4.04283 4.11735 4.16034 4.21459 4.23240 4.29894 4.33684 4.37361 4.49955 4.53381 4.57039 4.62003 4.66688 4.71798 4.77344 4.80506 4.88216 4.94022 5.07084 5.09046 5.11133 5.13476 5.19483 5.24406 5.29586 5.45158 5.47662 5.55018 5.58678 5.79920 6.13909 6.23594 6.29841 6.83859 7.00075 7.09622 7.87230 8.05196 9.20284 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.030004 B = 0.001870 C = 0.001836 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 932.990221 B =14972.404785 C =15250.338746 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.082 3.918 3 H 0.125 0.875 4 O -0.307 6.307 5 C 0.294 3.706 6 C -0.208 4.208 7 C -0.037 4.037 8 C -0.205 4.205 9 C 0.128 3.872 10 N -0.558 5.558 11 C 0.509 3.491 12 O -0.576 6.576 13 N -0.596 5.596 14 C 0.054 3.946 15 C 0.144 3.856 16 C -0.108 4.108 17 C -0.126 4.126 18 C 0.176 3.824 19 N -0.754 5.754 20 C -0.223 4.223 21 H 0.060 0.940 22 C -0.065 4.065 23 N -0.984 5.984 24 Si 0.951 3.049 25 H -0.277 1.277 26 H -0.298 1.298 27 H -0.257 1.257 28 C -0.117 4.117 29 C -0.108 4.108 30 H 0.078 0.922 31 H 0.055 0.945 32 H 0.112 0.888 33 H 0.140 0.860 34 H 0.171 0.829 35 H 0.171 0.829 36 H 0.189 0.811 37 H 0.082 0.918 38 H 0.093 0.907 39 H 0.093 0.907 40 H 0.072 0.928 41 H 0.084 0.916 42 H 0.059 0.941 43 H 0.045 0.955 44 H 0.045 0.955 45 H 0.053 0.947 46 H 0.363 0.637 47 H 0.256 0.744 48 H 0.055 0.945 49 H 0.072 0.928 50 H 0.070 0.930 51 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.002 14.714 -35.893 38.805 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.022 3.978 3 H 0.142 0.858 4 O -0.214 6.214 5 C 0.116 3.884 6 C -0.229 4.229 7 C -0.063 4.063 8 C -0.224 4.224 9 C -0.027 4.027 10 N -0.282 5.282 11 C 0.297 3.703 12 O -0.455 6.455 13 N -0.328 5.328 14 C -0.087 4.087 15 C 0.041 3.959 16 C -0.147 4.147 17 C -0.166 4.166 18 C 0.069 3.931 19 N -0.397 5.397 20 C -0.355 4.355 21 H 0.078 0.922 22 C -0.257 4.257 23 N -0.635 5.635 24 Si 0.779 3.221 25 H -0.204 1.204 26 H -0.225 1.225 27 H -0.182 1.182 28 C -0.156 4.156 29 C -0.147 4.147 30 H 0.097 0.903 31 H 0.074 0.926 32 H 0.131 0.869 33 H 0.158 0.842 34 H 0.188 0.812 35 H 0.188 0.812 36 H 0.206 0.794 37 H 0.100 0.900 38 H 0.112 0.888 39 H 0.112 0.888 40 H 0.091 0.909 41 H 0.102 0.898 42 H 0.078 0.922 43 H 0.064 0.936 44 H 0.064 0.936 45 H 0.071 0.929 46 H 0.196 0.804 47 H 0.065 0.935 48 H 0.074 0.926 49 H 0.091 0.909 50 H 0.089 0.911 51 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -1.096 14.324 -34.984 37.819 hybrid contribution 1.090 -1.432 0.208 1.812 sum -0.006 12.892 -34.777 37.089 Atomic orbital electron populations 1.22398 0.90608 1.03574 1.05822 1.22073 0.97001 0.97448 0.81255 0.85800 1.86342 1.80614 1.35867 1.18561 1.20144 0.93078 0.88163 0.87029 1.21342 1.06812 1.02794 0.91934 1.21850 0.92891 0.93761 0.97763 1.22418 1.03209 0.96270 1.00551 1.23054 0.92099 1.00324 0.87190 1.67218 1.22509 1.04334 1.34147 1.20796 0.79903 0.84251 0.85375 1.90703 1.39728 1.28174 1.86871 1.47832 1.51067 1.29803 1.04101 1.22427 0.95071 0.85972 1.05223 1.21052 0.95527 0.95493 0.83794 1.21709 0.97035 1.00814 0.95108 1.22023 0.99752 0.99032 0.95839 1.20458 0.94286 0.93308 0.85066 1.42874 1.18124 1.67158 1.11521 1.19048 0.98469 1.27786 0.90149 0.92161 1.25449 1.02066 1.02364 0.95783 1.69875 1.39211 1.50213 1.04187 0.85463 0.80790 0.77986 0.77855 1.20352 1.22528 1.18203 1.21699 0.97531 1.00339 0.96005 1.21715 0.99655 0.98373 0.94924 0.90315 0.92579 0.86924 0.84216 0.81160 0.81159 0.79419 0.90013 0.88835 0.88806 0.90941 0.89753 0.92225 0.93648 0.93618 0.92911 0.80443 0.93499 0.92595 0.90915 0.91093 0.89239 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.53 9.17 71.98 0.66 -1.87 16 2 C 0.08 1.71 2.10 29.85 0.06 1.77 16 3 H 0.12 2.25 6.24 -2.39 -0.01 2.23 16 4 O -0.31 -7.94 9.29 -70.90 -0.66 -8.59 16 5 C 0.29 6.20 7.45 84.80 0.63 6.83 16 6 C -0.21 -3.49 10.04 22.47 0.23 -3.27 16 7 C -0.04 -0.36 10.17 22.45 0.23 -0.14 16 8 C -0.20 -1.54 10.11 22.37 0.23 -1.32 16 9 C 0.13 1.36 11.18 84.63 0.95 2.30 16 10 N -0.56 -9.70 8.65 -308.96 -2.67 -12.37 16 11 C 0.51 13.48 7.15 87.66 0.63 14.10 16 12 O -0.58 -21.10 15.83 16.00 0.25 -20.85 16 13 N -0.60 -12.51 2.76 -822.58 -2.27 -14.78 16 14 C 0.05 0.63 7.86 127.77 1.00 1.63 16 15 C 0.14 3.64 2.52 44.99 0.11 3.75 16 16 C -0.11 -2.79 5.20 30.59 0.16 -2.63 16 17 C -0.13 -4.32 5.50 30.59 0.17 -4.15 16 18 C 0.18 6.44 2.77 44.99 0.12 6.56 16 19 N -0.75 -35.18 4.92 -322.94 -1.59 -36.77 16 20 C -0.22 -12.69 10.41 84.03 0.87 -11.82 16 21 H 0.06 3.72 8.06 -2.91 -0.02 3.69 16 22 C -0.07 -3.89 5.50 84.86 0.47 -3.42 16 23 N -0.98 -63.48 13.97 21.65 0.30 -63.18 16 24 Si 0.95 46.45 27.74 68.60 1.90 48.36 16 25 H -0.28 -13.14 7.11 99.48 0.71 -12.43 16 26 H -0.30 -14.82 7.11 99.48 0.71 -14.12 16 27 H -0.26 -11.57 6.52 99.48 0.65 -10.92 16 28 C -0.12 -3.42 5.39 30.59 0.16 -3.25 16 29 C -0.11 -2.47 5.18 30.59 0.16 -2.31 16 30 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 31 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 32 H 0.11 1.11 4.53 -2.39 -0.01 1.10 16 33 H 0.14 2.25 8.06 -2.91 -0.02 2.23 16 34 H 0.17 0.55 8.06 -2.91 -0.02 0.52 16 35 H 0.17 0.12 8.06 -2.91 -0.02 0.10 16 36 H 0.19 0.71 8.06 -2.91 -0.02 0.69 16 37 H 0.08 0.73 6.95 -2.39 -0.02 0.71 16 38 H 0.09 0.93 6.42 -2.39 -0.02 0.91 16 39 H 0.09 0.74 6.01 -2.38 -0.01 0.73 16 40 H 0.07 2.30 6.90 -2.39 -0.02 2.28 16 41 H 0.08 1.87 7.67 -2.39 -0.02 1.85 16 42 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 43 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 44 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16 45 H 0.05 1.97 8.08 -2.39 -0.02 1.95 16 46 H 0.36 16.53 5.66 -92.71 -0.52 16.01 16 47 H 0.26 15.81 8.31 -92.70 -0.77 15.04 16 48 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 49 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 50 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 51 H 0.09 1.69 6.66 -2.39 -0.02 1.67 16 Total: -1.00 -81.38 400.47 2.46 -78.91 By element: Atomic # 1 Polarization: 26.14 SS G_CDS: 0.35 Total: 26.49 kcal Atomic # 6 Polarization: -4.06 SS G_CDS: 6.84 Total: 2.78 kcal Atomic # 7 Polarization: -120.88 SS G_CDS: -6.23 Total: -127.11 kcal Atomic # 8 Polarization: -29.04 SS G_CDS: -0.41 Total: -29.44 kcal Atomic # 14 Polarization: 46.45 SS G_CDS: 1.90 Total: 48.36 kcal Total: -81.38 2.46 -78.91 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570665880.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.365 kcal (2) G-P(sol) polarization free energy of solvation -81.376 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.011 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.461 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.915 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds