Wall clock time and date at job start Wed Apr 1 2020 04:56:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08991 * 109.47379 * 2 1 4 4 O 1.42900 * 109.47252 * 120.00343 * 2 1 3 5 5 C 1.35674 * 116.99790 * 269.99556 * 4 2 1 6 6 C 1.38925 * 119.67982 * 179.97438 * 5 4 2 7 7 C 1.38377 * 119.10708 * 179.97438 * 6 5 4 8 8 C 1.38830 * 118.48823 * 0.02846 * 7 6 5 9 9 C 1.38047 * 119.28775 * 359.92828 * 8 7 6 10 10 N 1.31968 * 120.83600 * 0.07462 * 9 8 7 11 11 C 1.50703 * 109.46692 * 240.00005 * 2 1 3 12 12 O 1.21274 * 120.00212 * 247.38384 * 11 2 1 13 13 N 1.34778 * 119.99612 * 67.38937 * 11 2 1 14 14 C 1.46494 * 120.00598 * 5.40923 * 13 11 2 15 15 C 1.46501 * 119.99750 * 185.41164 * 13 11 2 16 16 C 1.53003 * 109.47075 * 170.35200 * 15 13 11 17 17 C 1.53006 * 109.46936 * 299.99759 * 16 15 13 18 18 C 1.52997 * 109.47456 * 300.00135 * 17 16 15 19 19 N 1.46496 * 109.47101 * 179.97438 * 18 17 16 20 20 C 1.36939 * 119.99965 * 85.00257 * 19 18 17 21 21 H 1.08001 * 119.99905 * 0.02562 * 20 19 18 22 22 C 1.38812 * 120.00280 * 179.97438 * 20 19 18 23 23 N 1.31620 * 120.00323 * 179.97438 * 22 20 19 24 24 Si 1.86803 * 119.99688 * 359.97438 * 22 20 19 25 25 H 1.48502 * 109.47411 * 89.99755 * 24 22 20 26 26 H 1.48502 * 109.47005 * 210.00017 * 24 22 20 27 27 H 1.48499 * 109.46943 * 329.99701 * 24 22 20 28 28 C 1.53003 * 109.47159 * 60.00001 * 18 17 16 29 29 C 1.52998 * 109.46906 * 300.00064 * 28 18 17 30 30 H 1.09007 * 109.46629 * 304.68683 * 1 2 3 31 31 H 1.09001 * 109.47502 * 64.68486 * 1 2 3 32 32 H 1.08995 * 109.47303 * 184.69142 * 1 2 3 33 33 H 1.07996 * 120.44616 * 359.73504 * 6 5 4 34 34 H 1.08002 * 120.75805 * 179.97438 * 7 6 5 35 35 H 1.07997 * 120.35444 * 179.97438 * 8 7 6 36 36 H 1.08000 * 119.58253 * 180.02562 * 9 8 7 37 37 H 1.09001 * 109.46560 * 35.84729 * 14 13 11 38 38 H 1.08997 * 109.47266 * 155.84757 * 14 13 11 39 39 H 1.09001 * 109.47257 * 275.85169 * 14 13 11 40 40 H 1.09004 * 109.47460 * 290.35247 * 15 13 11 41 41 H 1.08990 * 109.46976 * 60.00243 * 16 15 13 42 42 H 1.09007 * 109.46941 * 180.02562 * 16 15 13 43 43 H 1.09001 * 109.46718 * 179.97438 * 17 16 15 44 44 H 1.09000 * 109.46840 * 60.00119 * 17 16 15 45 45 H 1.09007 * 109.47195 * 300.00156 * 18 17 16 46 46 H 0.96997 * 120.00313 * 265.00103 * 19 18 17 47 47 H 0.96997 * 119.99681 * 179.97438 * 23 22 20 48 48 H 1.08994 * 109.47060 * 180.02562 * 28 18 17 49 49 H 1.08994 * 109.46859 * 59.99734 * 28 18 17 50 50 H 1.09007 * 109.47267 * 299.99735 * 29 28 18 51 51 H 1.09004 * 109.47055 * 179.97438 * 29 28 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0064 -0.6737 1.1667 5 6 2.2118 0.0828 2.2741 6 6 2.6739 -0.5152 3.4398 7 6 2.8798 0.2677 4.5620 8 6 2.6143 1.6278 4.4784 9 6 2.1578 2.1548 3.2869 10 7 1.9710 1.3825 2.2332 11 6 2.0323 -0.7104 -1.2305 12 8 2.6151 -1.7686 -1.1244 13 7 1.8337 -0.1697 -2.4490 14 6 1.2365 1.1624 -2.5708 15 6 2.2151 -0.9142 -3.6517 16 6 1.6720 -0.1968 -4.8892 17 6 0.1466 -0.1145 -4.8026 18 6 -0.4373 -1.5270 -4.7347 19 7 -1.8977 -1.4482 -4.6512 20 6 -2.6438 -1.3364 -5.7940 21 1 -2.1556 -1.3068 -6.7569 22 6 -4.0277 -1.2623 -5.7150 23 7 -4.7448 -1.1543 -6.8134 24 14 -4.8723 -1.3156 -4.0496 25 1 -5.0164 0.0654 -3.5232 26 1 -6.2152 -1.9326 -4.1952 27 1 -4.0566 -2.1222 -3.1066 28 6 0.1058 -2.2444 -3.4972 29 6 1.6311 -2.3267 -3.5838 30 1 -0.3633 0.5849 0.8451 31 1 -0.3634 0.4394 -0.9290 32 1 -0.3634 -1.0242 0.0840 33 1 2.8661 -1.5775 3.4708 34 1 3.2380 -0.1695 5.4823 35 1 2.7640 2.2669 5.3360 36 1 1.9501 3.2123 3.2164 37 1 1.5821 1.7919 -1.7508 38 1 1.5325 1.6079 -3.5205 39 1 0.1504 1.0787 -2.5317 40 1 3.3018 -0.9728 -3.7134 41 1 2.0880 0.8095 -4.9376 42 1 1.9555 -0.7509 -5.7841 43 1 -0.2402 0.3970 -5.6840 44 1 -0.1371 0.4394 -3.9078 45 1 -0.1535 -2.0810 -5.6296 46 1 -2.3363 -1.4752 -3.7864 47 1 -5.7119 -1.1029 -6.7581 48 1 -0.3099 -3.2509 -3.4490 49 1 -0.1779 -1.6905 -2.6024 50 1 1.9149 -2.8807 -4.4787 51 1 2.0181 -2.8374 -2.7020 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001570665881.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:56:02 Heat of formation + Delta-G solvation = -1.227306 kcal Electronic energy + Delta-G solvation = -31943.014726 eV Core-core repulsion = 27844.114726 eV Total energy + Delta-G solvation = -4098.900000 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.20646 -40.50656 -38.58775 -37.41264 -35.31729 -33.67919 -32.83442 -32.13149 -31.07224 -30.75740 -30.18911 -28.38986 -26.56071 -25.02824 -24.00484 -23.55781 -22.95531 -22.21804 -21.13468 -20.04206 -18.89393 -18.73770 -17.52127 -17.34113 -16.70782 -16.21149 -16.10212 -15.93201 -15.48795 -15.28626 -14.83040 -14.54021 -14.06235 -14.01257 -13.90754 -13.63296 -13.51020 -13.38822 -12.98189 -12.76032 -12.68705 -12.43349 -12.30923 -12.12005 -12.00077 -11.94557 -11.83168 -11.65419 -11.35633 -11.23182 -10.95269 -10.72770 -10.37349 -10.30376 -10.18750 -10.04911 -9.95625 -9.82737 -9.57201 -9.26419 -8.90259 -8.81318 -8.57476 -7.24372 -5.76194 -3.10855 0.81080 0.91879 2.31855 2.52563 3.22802 3.36908 3.40723 3.44667 3.45296 3.92841 4.25843 4.49710 4.59632 4.65700 4.71769 4.77719 4.84458 4.88057 4.94557 4.95291 5.02300 5.13204 5.28125 5.36502 5.43370 5.48260 5.50404 5.51010 5.58269 5.61155 5.66185 5.67755 5.83339 5.83773 5.93773 5.95469 5.96795 6.01204 6.07739 6.25565 6.38150 6.41562 6.50681 6.58276 6.71198 6.90004 6.94175 7.06199 7.31967 7.50129 8.01083 8.11245 8.43516 9.22460 9.95474 10.16005 11.42389 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.013532 B = 0.002862 C = 0.002568 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2068.636088 B = 9779.597020 C =10898.940421 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.075 3.925 3 H 0.112 0.888 4 O -0.276 6.276 5 C 0.326 3.674 6 C -0.189 4.189 7 C -0.040 4.040 8 C -0.216 4.216 9 C 0.140 3.860 10 N -0.543 5.543 11 C 0.518 3.482 12 O -0.519 6.519 13 N -0.597 5.597 14 C 0.061 3.939 15 C 0.155 3.845 16 C -0.125 4.125 17 C -0.151 4.151 18 C 0.184 3.816 19 N -0.749 5.749 20 C -0.239 4.239 21 H 0.089 0.911 22 C 0.003 3.997 23 N -0.935 5.935 24 Si 0.882 3.118 25 H -0.285 1.285 26 H -0.292 1.292 27 H -0.277 1.277 28 C -0.120 4.120 29 C -0.138 4.138 30 H 0.073 0.927 31 H 0.085 0.915 32 H 0.071 0.929 33 H 0.143 0.857 34 H 0.141 0.859 35 H 0.136 0.864 36 H 0.160 0.840 37 H 0.064 0.936 38 H 0.088 0.912 39 H 0.072 0.928 40 H 0.069 0.931 41 H 0.063 0.937 42 H 0.078 0.922 43 H 0.067 0.933 44 H 0.069 0.931 45 H 0.052 0.948 46 H 0.359 0.641 47 H 0.259 0.741 48 H 0.060 0.940 49 H 0.052 0.948 50 H 0.070 0.930 51 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.175 7.730 20.404 28.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.015 3.985 3 H 0.129 0.871 4 O -0.182 6.182 5 C 0.147 3.853 6 C -0.210 4.210 7 C -0.066 4.066 8 C -0.237 4.237 9 C -0.015 4.015 10 N -0.267 5.267 11 C 0.304 3.696 12 O -0.395 6.395 13 N -0.332 5.332 14 C -0.082 4.082 15 C 0.053 3.947 16 C -0.164 4.164 17 C -0.191 4.191 18 C 0.075 3.925 19 N -0.391 5.391 20 C -0.369 4.369 21 H 0.107 0.893 22 C -0.193 4.193 23 N -0.584 5.584 24 Si 0.713 3.287 25 H -0.212 1.212 26 H -0.218 1.218 27 H -0.204 1.204 28 C -0.159 4.159 29 C -0.176 4.176 30 H 0.092 0.908 31 H 0.104 0.896 32 H 0.090 0.910 33 H 0.161 0.839 34 H 0.159 0.841 35 H 0.154 0.846 36 H 0.177 0.823 37 H 0.082 0.918 38 H 0.107 0.893 39 H 0.091 0.909 40 H 0.087 0.913 41 H 0.082 0.918 42 H 0.096 0.904 43 H 0.085 0.915 44 H 0.087 0.913 45 H 0.070 0.930 46 H 0.191 0.809 47 H 0.069 0.931 48 H 0.079 0.921 49 H 0.071 0.929 50 H 0.089 0.911 51 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 18.122 7.220 19.348 27.475 hybrid contribution -0.648 -0.044 1.785 1.900 sum 17.474 7.176 21.133 28.345 Atomic orbital electron populations 1.22263 0.92121 1.04108 1.04266 1.22138 0.96013 0.97725 0.82636 0.87080 1.86391 1.79654 1.34452 1.17677 1.19926 0.90874 0.87392 0.87143 1.21114 1.06178 1.02297 0.91411 1.21428 0.94085 0.93454 0.97625 1.21982 1.05468 0.96234 0.99987 1.22434 0.92516 0.99228 0.87345 1.67270 1.21876 1.04779 1.32746 1.20062 0.79799 0.85749 0.83958 1.90653 1.40702 1.22175 1.85943 1.47735 1.62189 1.18076 1.05215 1.22305 0.99073 0.83203 1.03581 1.21100 0.98099 0.92084 0.83371 1.21907 0.97975 0.99959 0.96527 1.22609 0.92272 1.01211 1.02976 1.20173 0.83846 0.92778 0.95702 1.42802 1.01076 1.89703 1.05509 1.19078 0.88864 1.42085 0.86845 0.89276 1.24664 0.96080 1.02227 0.96294 1.69700 1.05376 1.57447 1.25835 0.86574 0.79268 0.77731 0.85127 1.21171 1.21825 1.20363 1.21744 0.94422 1.00778 0.98921 1.21980 0.96168 0.95780 1.03672 0.90836 0.89615 0.91037 0.83937 0.84140 0.84565 0.82326 0.91770 0.89338 0.90944 0.91313 0.91835 0.90387 0.91462 0.91291 0.92992 0.80857 0.93137 0.92104 0.92927 0.91118 0.89362 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.99 9.40 37.16 0.35 -1.64 16 2 C 0.07 0.93 2.16 -27.88 -0.06 0.87 16 3 H 0.11 1.25 5.74 -51.93 -0.30 0.96 16 4 O -0.28 -3.82 9.31 -38.53 -0.36 -4.17 16 5 C 0.33 3.84 7.45 -17.12 -0.13 3.71 16 6 C -0.19 -1.80 10.04 -39.28 -0.39 -2.19 16 7 C -0.04 -0.28 10.17 -39.31 -0.40 -0.68 16 8 C -0.22 -1.38 10.11 -39.43 -0.40 -1.78 16 9 C 0.14 1.09 11.18 -17.56 -0.20 0.89 16 10 N -0.54 -5.79 8.65 -13.33 -0.12 -5.90 16 11 C 0.52 7.40 6.27 -10.98 -0.07 7.33 16 12 O -0.52 -9.10 14.19 -14.24 -0.20 -9.30 16 13 N -0.60 -7.44 2.33 -173.93 -0.41 -7.84 16 14 C 0.06 0.61 7.23 59.84 0.43 1.04 16 15 C 0.16 2.00 3.08 -67.93 -0.21 1.79 16 16 C -0.13 -1.54 4.90 -26.73 -0.13 -1.67 16 17 C -0.15 -2.37 5.03 -26.73 -0.13 -2.50 16 18 C 0.18 3.45 2.77 -67.93 -0.19 3.26 16 19 N -0.75 -17.42 4.92 -53.42 -0.26 -17.68 16 20 C -0.24 -6.63 10.41 -15.06 -0.16 -6.78 16 21 H 0.09 2.65 8.06 -52.49 -0.42 2.23 16 22 C 0.00 0.08 5.50 -17.43 -0.10 -0.01 16 23 N -0.94 -29.28 13.97 55.49 0.78 -28.51 16 24 Si 0.88 22.11 27.73 -169.99 -4.71 17.40 16 25 H -0.28 -7.03 7.11 56.52 0.40 -6.63 16 26 H -0.29 -7.46 7.11 56.52 0.40 -7.06 16 27 H -0.28 -6.62 6.52 56.52 0.37 -6.25 16 28 C -0.12 -2.01 5.22 -26.73 -0.14 -2.15 16 29 C -0.14 -2.01 5.09 -26.73 -0.14 -2.14 16 30 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.09 0.95 5.46 -51.93 -0.28 0.66 16 32 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 33 H 0.14 1.21 8.06 -52.49 -0.42 0.79 16 34 H 0.14 0.56 8.06 -52.49 -0.42 0.14 16 35 H 0.14 0.50 8.06 -52.49 -0.42 0.08 16 36 H 0.16 0.77 8.06 -52.49 -0.42 0.35 16 37 H 0.06 0.52 6.55 -51.93 -0.34 0.18 16 38 H 0.09 0.80 5.48 -51.93 -0.28 0.51 16 39 H 0.07 0.78 4.79 -51.93 -0.25 0.53 16 40 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 41 H 0.06 0.66 6.53 -51.93 -0.34 0.32 16 42 H 0.08 0.94 8.14 -51.92 -0.42 0.51 16 43 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 44 H 0.07 1.03 4.18 -51.93 -0.22 0.81 16 45 H 0.05 1.04 8.08 -51.92 -0.42 0.62 16 46 H 0.36 8.33 5.66 -40.82 -0.23 8.10 16 47 H 0.26 7.73 8.31 -40.82 -0.34 7.40 16 48 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 49 H 0.05 0.89 7.27 -51.93 -0.38 0.51 16 50 H 0.07 0.96 8.14 -51.92 -0.42 0.54 16 51 H 0.09 1.43 5.69 -51.93 -0.30 1.14 16 LS Contribution 388.88 15.07 5.86 5.86 Total: -1.00 -34.59 388.88 -9.05 -43.64 By element: Atomic # 1 Polarization: 16.74 SS G_CDS: -7.58 Total: 9.17 kcal Atomic # 6 Polarization: -0.60 SS G_CDS: -2.05 Total: -2.65 kcal Atomic # 7 Polarization: -59.93 SS G_CDS: -0.01 Total: -59.93 kcal Atomic # 8 Polarization: -12.92 SS G_CDS: -0.56 Total: -13.48 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -4.71 Total: 17.40 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -34.59 -9.05 -43.64 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570665881.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.413 kcal (2) G-P(sol) polarization free energy of solvation -34.585 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.640 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds