Wall clock time and date at job start Wed Apr 1 2020 04:56:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08991 * 109.47379 * 2 1 4 4 O 1.42900 * 109.47252 * 120.00343 * 2 1 3 5 5 C 1.35674 * 116.99790 * 269.99556 * 4 2 1 6 6 C 1.38925 * 119.67982 * 179.97438 * 5 4 2 7 7 C 1.38377 * 119.10708 * 179.97438 * 6 5 4 8 8 C 1.38830 * 118.48823 * 0.02846 * 7 6 5 9 9 C 1.38047 * 119.28775 * 359.92828 * 8 7 6 10 10 N 1.31968 * 120.83600 * 0.07462 * 9 8 7 11 11 C 1.50703 * 109.46692 * 240.00005 * 2 1 3 12 12 O 1.21274 * 120.00212 * 247.38384 * 11 2 1 13 13 N 1.34778 * 119.99612 * 67.38937 * 11 2 1 14 14 C 1.46494 * 120.00598 * 5.40923 * 13 11 2 15 15 C 1.46501 * 119.99750 * 185.41164 * 13 11 2 16 16 C 1.53003 * 109.47075 * 170.35200 * 15 13 11 17 17 C 1.53006 * 109.46936 * 299.99759 * 16 15 13 18 18 C 1.52997 * 109.47456 * 300.00135 * 17 16 15 19 19 N 1.46496 * 109.47101 * 179.97438 * 18 17 16 20 20 C 1.36939 * 119.99965 * 85.00257 * 19 18 17 21 21 H 1.08001 * 119.99905 * 0.02562 * 20 19 18 22 22 C 1.38812 * 120.00280 * 179.97438 * 20 19 18 23 23 N 1.31620 * 120.00323 * 179.97438 * 22 20 19 24 24 Si 1.86803 * 119.99688 * 359.97438 * 22 20 19 25 25 H 1.48502 * 109.47411 * 89.99755 * 24 22 20 26 26 H 1.48502 * 109.47005 * 210.00017 * 24 22 20 27 27 H 1.48499 * 109.46943 * 329.99701 * 24 22 20 28 28 C 1.53003 * 109.47159 * 60.00001 * 18 17 16 29 29 C 1.52998 * 109.46906 * 300.00064 * 28 18 17 30 30 H 1.09007 * 109.46629 * 304.68683 * 1 2 3 31 31 H 1.09001 * 109.47502 * 64.68486 * 1 2 3 32 32 H 1.08995 * 109.47303 * 184.69142 * 1 2 3 33 33 H 1.07996 * 120.44616 * 359.73504 * 6 5 4 34 34 H 1.08002 * 120.75805 * 179.97438 * 7 6 5 35 35 H 1.07997 * 120.35444 * 179.97438 * 8 7 6 36 36 H 1.08000 * 119.58253 * 180.02562 * 9 8 7 37 37 H 1.09001 * 109.46560 * 35.84729 * 14 13 11 38 38 H 1.08997 * 109.47266 * 155.84757 * 14 13 11 39 39 H 1.09001 * 109.47257 * 275.85169 * 14 13 11 40 40 H 1.09004 * 109.47460 * 290.35247 * 15 13 11 41 41 H 1.08990 * 109.46976 * 60.00243 * 16 15 13 42 42 H 1.09007 * 109.46941 * 180.02562 * 16 15 13 43 43 H 1.09001 * 109.46718 * 179.97438 * 17 16 15 44 44 H 1.09000 * 109.46840 * 60.00119 * 17 16 15 45 45 H 1.09007 * 109.47195 * 300.00156 * 18 17 16 46 46 H 0.96997 * 120.00313 * 265.00103 * 19 18 17 47 47 H 0.96997 * 119.99681 * 179.97438 * 23 22 20 48 48 H 1.08994 * 109.47060 * 180.02562 * 28 18 17 49 49 H 1.08994 * 109.46859 * 59.99734 * 28 18 17 50 50 H 1.09007 * 109.47267 * 299.99735 * 29 28 18 51 51 H 1.09004 * 109.47055 * 179.97438 * 29 28 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0064 -0.6737 1.1667 5 6 2.2118 0.0828 2.2741 6 6 2.6739 -0.5152 3.4398 7 6 2.8798 0.2677 4.5620 8 6 2.6143 1.6278 4.4784 9 6 2.1578 2.1548 3.2869 10 7 1.9710 1.3825 2.2332 11 6 2.0323 -0.7104 -1.2305 12 8 2.6151 -1.7686 -1.1244 13 7 1.8337 -0.1697 -2.4490 14 6 1.2365 1.1624 -2.5708 15 6 2.2151 -0.9142 -3.6517 16 6 1.6720 -0.1968 -4.8892 17 6 0.1466 -0.1145 -4.8026 18 6 -0.4373 -1.5270 -4.7347 19 7 -1.8977 -1.4482 -4.6512 20 6 -2.6438 -1.3364 -5.7940 21 1 -2.1556 -1.3068 -6.7569 22 6 -4.0277 -1.2623 -5.7150 23 7 -4.7448 -1.1543 -6.8134 24 14 -4.8723 -1.3156 -4.0496 25 1 -5.0164 0.0654 -3.5232 26 1 -6.2152 -1.9326 -4.1952 27 1 -4.0566 -2.1222 -3.1066 28 6 0.1058 -2.2444 -3.4972 29 6 1.6311 -2.3267 -3.5838 30 1 -0.3633 0.5849 0.8451 31 1 -0.3634 0.4394 -0.9290 32 1 -0.3634 -1.0242 0.0840 33 1 2.8661 -1.5775 3.4708 34 1 3.2380 -0.1695 5.4823 35 1 2.7640 2.2669 5.3360 36 1 1.9501 3.2123 3.2164 37 1 1.5821 1.7919 -1.7508 38 1 1.5325 1.6079 -3.5205 39 1 0.1504 1.0787 -2.5317 40 1 3.3018 -0.9728 -3.7134 41 1 2.0880 0.8095 -4.9376 42 1 1.9555 -0.7509 -5.7841 43 1 -0.2402 0.3970 -5.6840 44 1 -0.1371 0.4394 -3.9078 45 1 -0.1535 -2.0810 -5.6296 46 1 -2.3363 -1.4752 -3.7864 47 1 -5.7119 -1.1029 -6.7581 48 1 -0.3099 -3.2509 -3.4490 49 1 -0.1779 -1.6905 -2.6024 50 1 1.9149 -2.8807 -4.4787 51 1 2.0181 -2.8374 -2.7020 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001570665881.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:56:01 Heat of formation + Delta-G solvation = -23.814982 kcal Electronic energy + Delta-G solvation = -31943.994201 eV Core-core repulsion = 27844.114726 eV Total energy + Delta-G solvation = -4099.879475 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -42.12714 -41.37337 -39.58769 -38.49355 -36.74816 -35.15629 -33.61141 -33.39517 -32.53608 -31.95847 -30.98337 -29.81140 -27.59488 -26.03051 -25.23931 -24.51941 -23.91491 -23.52519 -22.43244 -21.33121 -20.07838 -19.65627 -19.33237 -18.23826 -17.52250 -17.14794 -17.00189 -16.81593 -16.74947 -16.42492 -16.23571 -15.48189 -15.38124 -15.14591 -14.97221 -14.82501 -14.64337 -14.36615 -14.32173 -14.03498 -13.78370 -13.61837 -13.35785 -13.29128 -13.06348 -12.96738 -12.87430 -12.85657 -12.78221 -12.62257 -12.26164 -12.17328 -11.93091 -11.84885 -11.60033 -11.40923 -11.16597 -10.90534 -10.87852 -10.60225 -10.42574 -9.63084 -9.49656 -9.26485 -8.00750 -5.32788 0.20289 0.32390 1.36730 1.39404 1.40577 1.46644 1.49102 2.35324 2.48639 2.82572 3.26995 3.29898 3.31880 3.52764 3.81594 3.85186 3.86303 3.90875 4.04233 4.11479 4.15974 4.22369 4.23372 4.26917 4.31838 4.40798 4.48297 4.54700 4.60281 4.61804 4.63690 4.71439 4.76255 4.80528 4.84966 5.03126 5.05824 5.07777 5.13637 5.17102 5.25405 5.27954 5.29277 5.49157 5.51358 5.56763 5.72055 5.80287 6.15770 6.24024 6.33433 6.85085 7.06389 7.09788 7.87322 8.06030 9.21027 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.013532 B = 0.002862 C = 0.002568 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2068.636088 B = 9779.597020 C =10898.940421 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.082 3.918 3 H 0.124 0.876 4 O -0.304 6.304 5 C 0.292 3.708 6 C -0.207 4.207 7 C -0.037 4.037 8 C -0.204 4.204 9 C 0.127 3.873 10 N -0.559 5.559 11 C 0.513 3.487 12 O -0.559 6.559 13 N -0.593 5.593 14 C 0.053 3.947 15 C 0.157 3.843 16 C -0.114 4.114 17 C -0.142 4.142 18 C 0.179 3.821 19 N -0.752 5.752 20 C -0.220 4.220 21 H 0.057 0.943 22 C -0.065 4.065 23 N -0.985 5.985 24 Si 0.951 3.049 25 H -0.274 1.274 26 H -0.299 1.299 27 H -0.259 1.259 28 C -0.109 4.109 29 C -0.132 4.132 30 H 0.080 0.920 31 H 0.093 0.907 32 H 0.053 0.947 33 H 0.141 0.859 34 H 0.172 0.828 35 H 0.171 0.829 36 H 0.187 0.813 37 H 0.086 0.914 38 H 0.104 0.896 39 H 0.067 0.933 40 H 0.081 0.919 41 H 0.095 0.905 42 H 0.083 0.917 43 H 0.045 0.955 44 H 0.081 0.919 45 H 0.036 0.964 46 H 0.361 0.639 47 H 0.256 0.744 48 H 0.045 0.955 49 H 0.052 0.948 50 H 0.079 0.921 51 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.664 9.848 23.272 32.019 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.022 3.978 3 H 0.141 0.859 4 O -0.211 6.211 5 C 0.115 3.885 6 C -0.227 4.227 7 C -0.062 4.062 8 C -0.224 4.224 9 C -0.028 4.028 10 N -0.283 5.283 11 C 0.300 3.700 12 O -0.438 6.438 13 N -0.327 5.327 14 C -0.088 4.088 15 C 0.054 3.946 16 C -0.152 4.152 17 C -0.182 4.182 18 C 0.071 3.929 19 N -0.395 5.395 20 C -0.351 4.351 21 H 0.075 0.925 22 C -0.256 4.256 23 N -0.636 5.636 24 Si 0.779 3.221 25 H -0.200 1.200 26 H -0.226 1.226 27 H -0.185 1.185 28 C -0.147 4.147 29 C -0.170 4.170 30 H 0.099 0.901 31 H 0.111 0.889 32 H 0.072 0.928 33 H 0.159 0.841 34 H 0.190 0.810 35 H 0.188 0.812 36 H 0.204 0.796 37 H 0.105 0.895 38 H 0.122 0.878 39 H 0.086 0.914 40 H 0.099 0.901 41 H 0.113 0.887 42 H 0.102 0.898 43 H 0.064 0.936 44 H 0.099 0.901 45 H 0.054 0.946 46 H 0.194 0.806 47 H 0.065 0.935 48 H 0.064 0.936 49 H 0.070 0.930 50 H 0.098 0.902 51 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 19.663 9.368 22.240 31.129 hybrid contribution -1.006 -0.675 0.934 1.529 sum 18.657 8.693 23.174 30.995 Atomic orbital electron populations 1.22205 0.91777 1.03113 1.04918 1.22074 0.96080 0.97799 0.81861 0.85885 1.86347 1.80433 1.35763 1.18514 1.20188 0.93051 0.88148 0.87160 1.21342 1.06769 1.02792 0.91825 1.21853 0.92937 0.93695 0.97755 1.22412 1.03196 0.96341 1.00474 1.23044 0.92183 1.00305 0.87257 1.67223 1.22439 1.04479 1.34203 1.20468 0.79241 0.85348 0.84901 1.90630 1.42618 1.23937 1.86599 1.47802 1.61528 1.18796 1.04554 1.22507 0.98671 0.82163 1.05455 1.21088 0.98708 0.90992 0.83772 1.21832 0.95043 1.01878 0.96400 1.22442 0.94708 0.98414 1.02596 1.20400 0.81576 0.94925 0.95982 1.42831 1.02799 1.89731 1.04126 1.19011 0.89143 1.39854 0.87112 0.92458 1.25434 0.96920 1.03152 1.00111 1.69877 1.05455 1.59863 1.28421 0.85468 0.77604 0.78327 0.80731 1.19976 1.22639 1.18454 1.21598 0.95922 0.99521 0.97674 1.21903 0.94298 0.97383 1.03450 0.90124 0.88865 0.92829 0.84067 0.81039 0.81150 0.79588 0.89535 0.87801 0.91442 0.90088 0.88710 0.89808 0.93579 0.90061 0.94603 0.80592 0.93499 0.93613 0.92954 0.90231 0.90762 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.68 9.40 71.98 0.68 -3.01 16 2 C 0.08 1.99 2.16 29.85 0.06 2.05 16 3 H 0.12 2.62 5.74 -2.39 -0.01 2.60 16 4 O -0.30 -8.53 9.31 -70.98 -0.66 -9.19 16 5 C 0.29 6.79 7.45 84.80 0.63 7.43 16 6 C -0.21 -3.79 10.04 22.47 0.23 -3.56 16 7 C -0.04 -0.42 10.17 22.44 0.23 -0.19 16 8 C -0.20 -1.91 10.11 22.37 0.23 -1.68 16 9 C 0.13 1.63 11.18 84.63 0.95 2.58 16 10 N -0.56 -11.14 8.65 -308.95 -2.67 -13.81 16 11 C 0.51 14.35 6.27 87.66 0.55 14.90 16 12 O -0.56 -19.81 14.19 15.92 0.23 -19.58 16 13 N -0.59 -13.71 2.33 -822.59 -1.92 -15.62 16 14 C 0.05 0.91 7.23 127.77 0.92 1.84 16 15 C 0.16 3.73 3.08 44.99 0.14 3.86 16 16 C -0.11 -2.49 4.90 30.60 0.15 -2.34 16 17 C -0.14 -4.27 5.03 30.60 0.15 -4.11 16 18 C 0.18 6.64 2.77 44.99 0.12 6.77 16 19 N -0.75 -34.90 4.92 -322.94 -1.59 -36.49 16 20 C -0.22 -12.45 10.41 84.03 0.87 -11.57 16 21 H 0.06 3.55 8.06 -2.91 -0.02 3.53 16 22 C -0.07 -3.84 5.50 84.86 0.47 -3.37 16 23 N -0.99 -63.29 13.97 21.65 0.30 -62.99 16 24 Si 0.95 45.92 27.73 68.60 1.90 47.82 16 25 H -0.27 -12.66 7.11 99.48 0.71 -11.95 16 26 H -0.30 -14.77 7.11 99.48 0.71 -14.07 16 27 H -0.26 -11.60 6.52 99.48 0.65 -10.95 16 28 C -0.11 -3.60 5.22 30.59 0.16 -3.44 16 29 C -0.13 -3.76 5.09 30.60 0.16 -3.61 16 30 H 0.08 1.69 8.14 -2.38 -0.02 1.67 16 31 H 0.09 1.91 5.46 -2.39 -0.01 1.90 16 32 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 33 H 0.14 2.45 8.06 -2.91 -0.02 2.42 16 34 H 0.17 0.76 8.06 -2.91 -0.02 0.73 16 35 H 0.17 0.40 8.06 -2.91 -0.02 0.38 16 36 H 0.19 1.17 8.06 -2.91 -0.02 1.15 16 37 H 0.09 1.13 6.55 -2.39 -0.02 1.12 16 38 H 0.10 1.48 5.48 -2.39 -0.01 1.46 16 39 H 0.07 1.27 4.79 -2.39 -0.01 1.25 16 40 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 41 H 0.09 1.58 6.53 -2.39 -0.02 1.57 16 42 H 0.08 1.81 8.14 -2.38 -0.02 1.79 16 43 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 44 H 0.08 2.26 4.18 -2.39 -0.01 2.25 16 45 H 0.04 1.45 8.08 -2.38 -0.02 1.43 16 46 H 0.36 16.40 5.66 -92.71 -0.52 15.88 16 47 H 0.26 15.73 8.31 -92.71 -0.77 14.96 16 48 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 49 H 0.05 1.73 7.27 -2.39 -0.02 1.71 16 50 H 0.08 2.10 8.14 -2.38 -0.02 2.09 16 51 H 0.07 2.42 5.69 -2.38 -0.01 2.40 16 Total: -1.00 -78.32 388.88 2.66 -75.66 By element: Atomic # 1 Polarization: 31.30 SS G_CDS: 0.37 Total: 31.67 kcal Atomic # 6 Polarization: -4.16 SS G_CDS: 6.70 Total: 2.54 kcal Atomic # 7 Polarization: -123.04 SS G_CDS: -5.88 Total: -128.92 kcal Atomic # 8 Polarization: -28.34 SS G_CDS: -0.43 Total: -28.78 kcal Atomic # 14 Polarization: 45.92 SS G_CDS: 1.90 Total: 47.82 kcal Total: -78.32 2.66 -75.66 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570665881.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.846 kcal (2) G-P(sol) polarization free energy of solvation -78.322 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.476 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.661 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.661 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.815 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds