Wall clock time and date at job start Wed Apr 1 2020 06:22:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46497 * 109.46978 * 2 1 4 4 C 1.39921 * 119.99455 * 90.00729 * 3 2 1 5 5 C 1.38878 * 120.00886 * 354.57170 * 4 3 2 6 6 C 1.38069 * 119.99721 * 180.02562 * 5 4 3 7 7 C 1.38833 * 120.00454 * 0.27886 * 6 5 4 8 8 N 1.40199 * 119.99719 * 179.70073 * 7 6 5 9 9 C 1.34783 * 119.99549 * 35.13226 * 8 7 6 10 10 O 1.21589 * 120.00023 * 355.56344 * 9 8 7 11 11 N 1.34776 * 119.99506 * 175.55646 * 9 8 7 12 12 C 1.47068 * 136.06270 * 359.63906 * 11 9 8 13 13 C 1.53236 * 88.08330 * 207.19789 * 12 11 9 14 14 O 1.42902 * 114.01740 * 87.71403 * 13 12 11 15 15 C 1.50698 * 114.32715 * 220.46687 * 13 12 11 16 16 H 1.07998 * 120.00148 * 93.75529 * 15 13 12 17 17 C 1.37882 * 119.99817 * 273.76408 * 15 13 12 18 18 N 1.31512 * 120.00138 * 359.97438 * 17 15 13 19 19 Si 1.86802 * 119.99749 * 179.97438 * 17 15 13 20 20 H 1.48499 * 109.47173 * 89.99410 * 19 17 15 21 21 H 1.48500 * 109.47039 * 209.99676 * 19 17 15 22 22 H 1.48500 * 109.47221 * 329.99870 * 19 17 15 23 23 C 1.47074 * 136.05508 * 179.97438 * 11 9 8 24 24 C 1.38837 * 120.00957 * 359.44562 * 7 6 5 25 25 C 1.38067 * 120.00430 * 0.55443 * 24 7 6 26 26 C 1.46495 * 120.00295 * 270.00187 * 3 2 1 27 27 C 1.52996 * 109.47621 * 304.80521 * 26 3 2 28 28 C 1.53007 * 109.47023 * 64.80735 * 26 3 2 29 29 H 1.08993 * 109.47564 * 59.99432 * 1 2 3 30 30 H 1.09006 * 109.47242 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.47186 * 299.98988 * 1 2 3 32 32 H 1.09010 * 109.46911 * 240.00714 * 2 1 3 33 33 H 1.08993 * 109.47418 * 120.01103 * 2 1 3 34 34 H 1.08007 * 119.99876 * 0.02562 * 5 4 3 35 35 H 1.07999 * 119.99503 * 179.97438 * 6 5 4 36 36 H 0.96997 * 120.00158 * 215.13671 * 8 7 6 37 37 H 1.09003 * 113.46156 * 321.93002 * 12 11 9 38 38 H 1.09000 * 113.46767 * 92.36810 * 12 11 9 39 39 H 0.96698 * 113.99927 * 86.38928 * 14 13 12 40 40 H 0.97002 * 119.99937 * 179.97438 * 18 17 15 41 41 H 1.09002 * 113.46633 * 267.63091 * 23 11 9 42 42 H 1.08995 * 113.46565 * 38.06967 * 23 11 9 43 43 H 1.08001 * 119.99668 * 180.27857 * 24 7 6 44 44 H 1.08009 * 120.00420 * 179.74548 * 25 24 7 45 45 H 1.09008 * 109.47110 * 184.80144 * 26 3 2 46 46 H 1.08999 * 109.47068 * 59.99580 * 27 26 3 47 47 H 1.09000 * 109.47460 * 180.02562 * 27 26 3 48 48 H 1.09001 * 109.46928 * 299.99851 * 27 26 3 49 49 H 1.09000 * 109.47124 * 59.99790 * 28 26 3 50 50 H 1.09000 * 109.46919 * 179.97438 * 28 26 3 51 51 H 1.08999 * 109.46681 * 299.99816 * 28 26 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2516 2.0406 1.2118 5 6 1.9146 1.4283 2.4119 6 6 2.1444 2.0794 3.6075 7 6 2.7070 3.3487 3.6099 8 7 2.9345 4.0123 4.8237 9 6 3.2999 3.3124 5.9161 10 8 3.3540 2.0986 5.8705 11 7 3.6055 3.9582 7.0589 12 6 3.6660 5.3600 7.4996 13 6 4.7214 4.9377 8.5271 14 8 6.0606 4.9617 8.0288 15 6 4.5725 5.5939 9.8756 16 1 4.0166 5.0993 10.6583 17 6 5.1459 6.8257 10.1099 18 7 5.8231 7.4279 9.1568 19 14 4.9606 7.6394 11.7812 20 1 6.0840 7.2262 12.6601 21 1 4.9769 9.1153 11.6177 22 1 3.6737 7.2234 12.3944 23 6 4.0311 3.5714 8.4126 24 6 3.0493 3.9587 2.4106 25 6 2.8197 3.3080 1.2147 26 6 2.2624 2.0719 -1.2686 27 6 3.2264 1.2454 -2.1221 28 6 0.9394 2.2460 -2.0173 29 1 -0.3634 0.5139 -0.8898 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5137 0.8901 32 1 1.8933 -0.5138 -0.8901 33 1 1.8934 -0.5140 0.8898 34 1 1.4728 0.4427 2.4099 35 1 1.8820 1.6034 4.5407 36 1 2.8289 4.9750 4.8774 37 1 4.0507 6.0382 6.7379 38 1 2.7386 5.7137 7.9501 39 1 6.4923 5.8238 8.1026 40 1 6.2261 8.2947 9.3216 41 1 3.2019 3.4442 9.1085 42 1 4.7257 2.7315 8.4257 43 1 3.4911 4.9442 2.4129 44 1 3.0821 3.7843 0.2816 45 1 2.6997 3.0507 -1.0712 46 1 2.7891 0.2667 -2.3195 47 1 3.4084 1.7595 -3.0659 48 1 4.1689 1.1214 -1.5888 49 1 0.2527 2.8349 -1.4093 50 1 1.1210 2.7603 -2.9610 51 1 0.5022 1.2673 -2.2147 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001645960018.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:22:11 Heat of formation + Delta-G solvation = 5.343295 kcal Electronic energy + Delta-G solvation = -30439.492385 eV Core-core repulsion = 26340.877308 eV Total energy + Delta-G solvation = -4098.615077 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.32275 -39.54175 -38.23886 -36.86119 -34.15820 -34.00195 -33.06092 -32.19706 -30.99478 -30.44586 -28.77322 -27.63578 -26.93783 -25.19137 -25.06595 -23.84969 -22.68365 -21.60020 -20.62087 -19.68992 -18.82795 -18.08739 -17.70247 -17.02420 -16.62768 -15.91344 -15.26444 -15.04758 -14.88382 -14.68176 -14.54843 -14.18303 -14.11373 -14.02053 -13.67027 -13.33324 -13.20313 -12.94623 -12.93127 -12.83502 -12.62831 -12.51445 -12.27177 -12.04441 -11.98629 -11.94044 -11.56041 -11.54659 -11.25741 -11.08896 -11.03308 -10.98783 -10.63410 -10.48968 -10.29749 -10.25873 -9.74187 -9.27233 -8.90712 -8.78871 -8.72154 -8.40501 -7.83517 -6.89885 -6.41438 -4.51708 1.59390 1.73152 2.95445 3.07675 3.14180 3.22380 3.25203 3.66847 4.12946 4.16601 4.41979 4.45838 4.69019 4.76682 4.83261 4.85733 5.04269 5.11371 5.15737 5.19096 5.25135 5.27892 5.42684 5.48212 5.53468 5.55643 5.59261 5.64952 5.73311 5.75068 5.80311 5.91403 5.94276 6.04713 6.12618 6.23123 6.24396 6.36119 6.42041 6.45134 6.55044 6.67080 6.74009 6.79913 7.09266 7.21022 7.30470 7.59076 7.61623 7.70769 7.81024 8.51856 8.67240 9.10843 9.20323 9.49516 10.65215 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.028036 B = 0.001905 C = 0.001852 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 998.472804 B =14691.557661 C =15111.925924 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.120 3.880 3 N -0.626 5.626 4 C 0.195 3.805 5 C -0.177 4.177 6 C -0.073 4.073 7 C 0.121 3.879 8 N -0.687 5.687 9 C 0.730 3.270 10 O -0.595 6.595 11 N -0.653 5.653 12 C 0.072 3.928 13 C 0.241 3.759 14 O -0.571 6.571 15 C -0.532 4.532 16 H 0.073 0.927 17 C 0.071 3.929 18 N -0.898 5.898 19 Si 0.909 3.091 20 H -0.277 1.277 21 H -0.284 1.284 22 H -0.271 1.271 23 C 0.129 3.871 24 C -0.103 4.103 25 C -0.181 4.181 26 C 0.142 3.858 27 C -0.164 4.164 28 C -0.166 4.166 29 H 0.061 0.939 30 H 0.058 0.942 31 H 0.059 0.941 32 H 0.071 0.929 33 H 0.073 0.927 34 H 0.121 0.879 35 H 0.139 0.861 36 H 0.403 0.597 37 H 0.061 0.939 38 H 0.079 0.921 39 H 0.393 0.607 40 H 0.274 0.726 41 H 0.084 0.916 42 H 0.066 0.934 43 H 0.122 0.878 44 H 0.122 0.878 45 H 0.090 0.910 46 H 0.057 0.943 47 H 0.063 0.937 48 H 0.060 0.940 49 H 0.058 0.942 50 H 0.060 0.940 51 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.161 -7.047 -20.371 23.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.004 4.004 3 N -0.339 5.339 4 C 0.095 3.905 5 C -0.199 4.199 6 C -0.094 4.094 7 C 0.025 3.975 8 N -0.334 5.334 9 C 0.434 3.566 10 O -0.475 6.475 11 N -0.390 5.390 12 C -0.052 4.052 13 C 0.198 3.802 14 O -0.384 6.384 15 C -0.570 4.570 16 H 0.091 0.909 17 C -0.131 4.131 18 N -0.539 5.539 19 Si 0.736 3.264 20 H -0.202 1.202 21 H -0.209 1.209 22 H -0.195 1.195 23 C 0.006 3.994 24 C -0.125 4.125 25 C -0.203 4.203 26 C 0.038 3.962 27 C -0.223 4.223 28 C -0.224 4.224 29 H 0.079 0.921 30 H 0.077 0.923 31 H 0.078 0.922 32 H 0.089 0.911 33 H 0.092 0.908 34 H 0.139 0.861 35 H 0.157 0.843 36 H 0.237 0.763 37 H 0.079 0.921 38 H 0.097 0.903 39 H 0.250 0.750 40 H 0.084 0.916 41 H 0.102 0.898 42 H 0.085 0.915 43 H 0.140 0.860 44 H 0.140 0.860 45 H 0.108 0.892 46 H 0.076 0.924 47 H 0.082 0.918 48 H 0.079 0.921 49 H 0.077 0.923 50 H 0.079 0.921 51 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -9.177 -8.551 -20.828 24.313 hybrid contribution -0.070 1.672 0.860 1.882 sum -9.247 -6.878 -19.968 23.055 Atomic orbital electron populations 1.22425 0.96791 1.01688 1.02839 1.21287 0.93761 0.82937 1.02368 1.46555 1.72425 1.12731 1.02204 1.17761 0.95321 0.91835 0.85579 1.20556 1.07691 1.01107 0.90572 1.21129 0.95770 0.94007 0.98449 1.17360 1.01597 0.94383 0.84195 1.42499 1.72421 1.10613 1.07835 1.15242 0.77590 0.84523 0.79281 1.90829 1.61453 1.11626 1.83563 1.48807 1.69352 1.11246 1.09597 1.24136 1.01440 0.81764 0.97824 1.19487 0.80650 0.89617 0.90409 1.86060 1.26810 1.40379 1.85130 1.21427 1.34662 1.03358 0.97592 0.90873 1.25088 0.93743 0.96546 0.97747 1.69265 1.34909 1.16923 1.32799 0.86304 0.78922 0.78232 0.82903 1.20230 1.20940 1.19525 1.23219 0.96871 1.00140 0.79180 1.20642 1.00416 1.00550 0.90851 1.20378 1.07191 0.95166 0.97589 1.20965 0.95048 0.96632 0.83546 1.22193 0.99736 1.00544 0.99778 1.22340 0.97848 1.02128 1.00097 0.92052 0.92284 0.92182 0.91094 0.90848 0.86131 0.84293 0.76251 0.92095 0.90259 0.75033 0.91586 0.89842 0.91533 0.86023 0.86012 0.89188 0.92395 0.91766 0.92126 0.92273 0.92072 0.92114 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.33 9.94 37.16 0.37 -0.96 16 2 C 0.12 0.98 5.31 -4.04 -0.02 0.96 16 3 N -0.63 -6.02 2.54 -164.13 -0.42 -6.44 16 4 C 0.19 2.41 6.54 -83.69 -0.55 1.86 16 5 C -0.18 -2.42 9.11 -39.41 -0.36 -2.78 16 6 C -0.07 -1.19 8.69 -39.42 -0.34 -1.53 16 7 C 0.12 1.97 6.30 -83.59 -0.53 1.45 16 8 N -0.69 -12.02 5.35 -14.17 -0.08 -12.09 16 9 C 0.73 15.53 8.64 -86.91 -0.75 14.78 16 10 O -0.59 -14.13 14.56 5.29 0.08 -14.05 16 11 N -0.65 -14.02 3.69 -191.15 -0.71 -14.73 16 12 C 0.07 1.52 7.69 -8.64 -0.07 1.45 16 13 C 0.24 5.74 1.57 -91.38 -0.14 5.60 16 14 O -0.57 -14.82 13.53 -35.23 -0.48 -15.30 16 15 C -0.53 -13.14 8.69 -34.44 -0.30 -13.44 16 16 H 0.07 1.75 7.81 -52.49 -0.41 1.34 16 17 C 0.07 1.75 5.40 -17.82 -0.10 1.65 16 18 N -0.90 -22.50 11.01 55.43 0.61 -21.89 16 19 Si 0.91 19.19 29.54 -169.99 -5.02 14.17 16 20 H -0.28 -5.89 7.11 56.52 0.40 -5.49 16 21 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 22 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 23 C 0.13 2.83 8.04 -8.49 -0.07 2.76 16 24 C -0.10 -1.42 9.96 -39.42 -0.39 -1.81 16 25 C -0.18 -2.22 9.31 -39.41 -0.37 -2.59 16 26 C 0.14 1.10 3.20 -67.93 -0.22 0.89 16 27 C -0.16 -1.09 9.07 37.16 0.34 -0.75 16 28 C -0.17 -1.10 8.43 37.16 0.31 -0.78 16 29 H 0.06 0.44 5.42 -51.93 -0.28 0.16 16 30 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 31 H 0.06 0.53 8.03 -51.93 -0.42 0.12 16 32 H 0.07 0.49 6.19 -51.92 -0.32 0.16 16 33 H 0.07 0.65 6.44 -51.93 -0.33 0.31 16 34 H 0.12 1.45 6.21 -52.48 -0.33 1.13 16 35 H 0.14 2.55 6.23 -52.49 -0.33 2.22 16 36 H 0.40 6.19 8.55 -40.82 -0.35 5.84 16 37 H 0.06 1.28 8.14 -51.93 -0.42 0.85 16 38 H 0.08 1.59 8.10 -51.93 -0.42 1.17 16 39 H 0.39 10.27 6.33 45.56 0.29 10.56 16 40 H 0.27 6.52 8.31 -40.82 -0.34 6.18 16 41 H 0.08 1.66 8.10 -51.93 -0.42 1.24 16 42 H 0.07 1.50 8.14 -51.93 -0.42 1.08 16 43 H 0.12 1.47 8.06 -52.49 -0.42 1.04 16 44 H 0.12 1.23 5.73 -52.48 -0.30 0.93 16 45 H 0.09 0.72 5.31 -51.92 -0.28 0.44 16 46 H 0.06 0.36 6.52 -51.93 -0.34 0.02 16 47 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 48 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 49 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 50 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 51 H 0.06 0.38 6.01 -51.93 -0.31 0.07 16 LS Contribution 401.77 15.07 6.05 6.05 Total: -1.00 -28.93 401.77 -10.20 -39.12 By element: Atomic # 1 Polarization: 25.48 SS G_CDS: -7.06 Total: 18.42 kcal Atomic # 6 Polarization: 9.91 SS G_CDS: -3.18 Total: 6.73 kcal Atomic # 7 Polarization: -54.57 SS G_CDS: -0.59 Total: -55.16 kcal Atomic # 8 Polarization: -28.95 SS G_CDS: -0.40 Total: -29.35 kcal Atomic # 14 Polarization: 19.19 SS G_CDS: -5.02 Total: 14.17 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -28.93 -10.20 -39.12 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001645960018.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.467 kcal (2) G-P(sol) polarization free energy of solvation -28.929 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.195 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.124 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.343 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds