Wall clock time and date at job start Wed Apr 1 2020 06:22:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46497 * 109.46978 * 2 1 4 4 C 1.39921 * 119.99455 * 90.00729 * 3 2 1 5 5 C 1.38878 * 120.00886 * 354.57170 * 4 3 2 6 6 C 1.38069 * 119.99721 * 180.02562 * 5 4 3 7 7 C 1.38833 * 120.00454 * 0.27886 * 6 5 4 8 8 N 1.40199 * 119.99719 * 179.70073 * 7 6 5 9 9 C 1.34783 * 119.99549 * 35.13226 * 8 7 6 10 10 O 1.21589 * 120.00023 * 355.56344 * 9 8 7 11 11 N 1.34776 * 119.99506 * 175.55646 * 9 8 7 12 12 C 1.47068 * 136.06270 * 359.63906 * 11 9 8 13 13 C 1.53236 * 88.08330 * 207.19789 * 12 11 9 14 14 O 1.42902 * 114.01740 * 87.71403 * 13 12 11 15 15 C 1.50698 * 114.32715 * 220.46687 * 13 12 11 16 16 H 1.07998 * 120.00148 * 93.75529 * 15 13 12 17 17 C 1.37882 * 119.99817 * 273.76408 * 15 13 12 18 18 N 1.31512 * 120.00138 * 359.97438 * 17 15 13 19 19 Si 1.86802 * 119.99749 * 179.97438 * 17 15 13 20 20 H 1.48499 * 109.47173 * 89.99410 * 19 17 15 21 21 H 1.48500 * 109.47039 * 209.99676 * 19 17 15 22 22 H 1.48500 * 109.47221 * 329.99870 * 19 17 15 23 23 C 1.47074 * 136.05508 * 179.97438 * 11 9 8 24 24 C 1.38837 * 120.00957 * 359.44562 * 7 6 5 25 25 C 1.38067 * 120.00430 * 0.55443 * 24 7 6 26 26 C 1.46495 * 120.00295 * 270.00187 * 3 2 1 27 27 C 1.52996 * 109.47621 * 304.80521 * 26 3 2 28 28 C 1.53007 * 109.47023 * 64.80735 * 26 3 2 29 29 H 1.08993 * 109.47564 * 59.99432 * 1 2 3 30 30 H 1.09006 * 109.47242 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.47186 * 299.98988 * 1 2 3 32 32 H 1.09010 * 109.46911 * 240.00714 * 2 1 3 33 33 H 1.08993 * 109.47418 * 120.01103 * 2 1 3 34 34 H 1.08007 * 119.99876 * 0.02562 * 5 4 3 35 35 H 1.07999 * 119.99503 * 179.97438 * 6 5 4 36 36 H 0.96997 * 120.00158 * 215.13671 * 8 7 6 37 37 H 1.09003 * 113.46156 * 321.93002 * 12 11 9 38 38 H 1.09000 * 113.46767 * 92.36810 * 12 11 9 39 39 H 0.96698 * 113.99927 * 86.38928 * 14 13 12 40 40 H 0.97002 * 119.99937 * 179.97438 * 18 17 15 41 41 H 1.09002 * 113.46633 * 267.63091 * 23 11 9 42 42 H 1.08995 * 113.46565 * 38.06967 * 23 11 9 43 43 H 1.08001 * 119.99668 * 180.27857 * 24 7 6 44 44 H 1.08009 * 120.00420 * 179.74548 * 25 24 7 45 45 H 1.09008 * 109.47110 * 184.80144 * 26 3 2 46 46 H 1.08999 * 109.47068 * 59.99580 * 27 26 3 47 47 H 1.09000 * 109.47460 * 180.02562 * 27 26 3 48 48 H 1.09001 * 109.46928 * 299.99851 * 27 26 3 49 49 H 1.09000 * 109.47124 * 59.99790 * 28 26 3 50 50 H 1.09000 * 109.46919 * 179.97438 * 28 26 3 51 51 H 1.08999 * 109.46681 * 299.99816 * 28 26 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2516 2.0406 1.2118 5 6 1.9146 1.4283 2.4119 6 6 2.1444 2.0794 3.6075 7 6 2.7070 3.3487 3.6099 8 7 2.9345 4.0123 4.8237 9 6 3.2999 3.3124 5.9161 10 8 3.3540 2.0986 5.8705 11 7 3.6055 3.9582 7.0589 12 6 3.6660 5.3600 7.4996 13 6 4.7214 4.9377 8.5271 14 8 6.0606 4.9617 8.0288 15 6 4.5725 5.5939 9.8756 16 1 4.0166 5.0993 10.6583 17 6 5.1459 6.8257 10.1099 18 7 5.8231 7.4279 9.1568 19 14 4.9606 7.6394 11.7812 20 1 6.0840 7.2262 12.6601 21 1 4.9769 9.1153 11.6177 22 1 3.6737 7.2234 12.3944 23 6 4.0311 3.5714 8.4126 24 6 3.0493 3.9587 2.4106 25 6 2.8197 3.3080 1.2147 26 6 2.2624 2.0719 -1.2686 27 6 3.2264 1.2454 -2.1221 28 6 0.9394 2.2460 -2.0173 29 1 -0.3634 0.5139 -0.8898 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5137 0.8901 32 1 1.8933 -0.5138 -0.8901 33 1 1.8934 -0.5140 0.8898 34 1 1.4728 0.4427 2.4099 35 1 1.8820 1.6034 4.5407 36 1 2.8289 4.9750 4.8774 37 1 4.0507 6.0382 6.7379 38 1 2.7386 5.7137 7.9501 39 1 6.4923 5.8238 8.1026 40 1 6.2261 8.2947 9.3216 41 1 3.2019 3.4442 9.1085 42 1 4.7257 2.7315 8.4257 43 1 3.4911 4.9442 2.4129 44 1 3.0821 3.7843 0.2816 45 1 2.6997 3.0507 -1.0712 46 1 2.7891 0.2667 -2.3195 47 1 3.4084 1.7595 -3.0659 48 1 4.1689 1.1214 -1.5888 49 1 0.2527 2.8349 -1.4093 50 1 1.1210 2.7603 -2.9610 51 1 0.5022 1.2673 -2.2147 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001645960018.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:22:10 Heat of formation + Delta-G solvation = -11.940340 kcal Electronic energy + Delta-G solvation = -30440.241860 eV Core-core repulsion = 26340.877308 eV Total energy + Delta-G solvation = -4099.364552 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.75940 -40.76832 -39.65646 -38.06019 -35.88762 -35.46013 -34.11717 -33.79291 -32.03879 -31.46378 -30.30757 -28.36214 -27.96870 -26.90900 -26.75528 -24.69038 -23.77824 -22.54878 -22.14240 -20.75343 -20.30132 -19.56450 -19.06538 -18.49343 -17.99068 -17.10204 -16.84039 -16.62263 -16.42972 -15.87026 -15.67924 -15.29706 -15.19601 -14.97082 -14.81111 -14.53544 -14.42847 -14.40666 -14.02020 -13.85388 -13.74046 -13.64645 -13.40025 -13.38630 -13.07722 -12.83975 -12.78454 -12.75212 -12.65159 -12.20974 -12.20051 -12.15489 -12.10734 -11.70173 -11.59313 -11.46236 -11.22152 -11.00883 -10.65764 -10.26800 -10.07393 -9.84430 -9.51605 -8.26874 -7.91099 -6.43609 0.50638 0.58385 1.48130 1.48615 1.54169 1.61209 2.08696 2.21173 2.41121 2.87811 2.97764 3.00135 3.72328 3.79374 3.91171 4.08388 4.13410 4.19414 4.20868 4.38267 4.40165 4.46449 4.48627 4.53237 4.54366 4.61154 4.65754 4.71241 4.78541 4.81454 4.81836 4.89249 4.90555 4.91917 5.01509 5.07490 5.16622 5.19551 5.23835 5.26928 5.38661 5.41196 5.47480 5.54866 5.64110 5.73852 5.91145 6.01650 6.27130 6.49849 6.62834 6.64465 7.02909 7.29615 7.50083 7.51449 8.79502 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.028036 B = 0.001905 C = 0.001852 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 998.472804 B =14691.557661 C =15111.925924 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.114 3.886 3 N -0.622 5.622 4 C 0.204 3.796 5 C -0.184 4.184 6 C -0.090 4.090 7 C 0.084 3.916 8 N -0.673 5.673 9 C 0.723 3.277 10 O -0.626 6.626 11 N -0.657 5.657 12 C 0.088 3.912 13 C 0.220 3.780 14 O -0.587 6.587 15 C -0.549 4.549 16 H 0.076 0.924 17 C 0.031 3.969 18 N -0.918 5.918 19 Si 0.972 3.028 20 H -0.279 1.279 21 H -0.281 1.281 22 H -0.265 1.265 23 C 0.129 3.871 24 C -0.096 4.096 25 C -0.180 4.180 26 C 0.135 3.865 27 C -0.159 4.159 28 C -0.160 4.160 29 H 0.067 0.933 30 H 0.073 0.927 31 H 0.041 0.959 32 H 0.090 0.910 33 H 0.064 0.936 34 H 0.131 0.869 35 H 0.111 0.889 36 H 0.412 0.588 37 H 0.061 0.939 38 H 0.093 0.907 39 H 0.389 0.611 40 H 0.276 0.724 41 H 0.104 0.896 42 H 0.052 0.948 43 H 0.140 0.860 44 H 0.150 0.850 45 H 0.090 0.910 46 H 0.063 0.937 47 H 0.080 0.920 48 H 0.047 0.953 49 H 0.046 0.954 50 H 0.077 0.923 51 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.965 -6.576 -22.522 25.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.009 4.009 3 N -0.333 5.333 4 C 0.101 3.899 5 C -0.207 4.207 6 C -0.111 4.111 7 C -0.011 4.011 8 N -0.321 5.321 9 C 0.427 3.573 10 O -0.508 6.508 11 N -0.393 5.393 12 C -0.035 4.035 13 C 0.178 3.822 14 O -0.400 6.400 15 C -0.588 4.588 16 H 0.094 0.906 17 C -0.169 4.169 18 N -0.558 5.558 19 Si 0.797 3.203 20 H -0.205 1.205 21 H -0.206 1.206 22 H -0.189 1.189 23 C 0.006 3.994 24 C -0.117 4.117 25 C -0.202 4.202 26 C 0.032 3.968 27 C -0.217 4.217 28 C -0.218 4.218 29 H 0.086 0.914 30 H 0.091 0.909 31 H 0.060 0.940 32 H 0.109 0.891 33 H 0.083 0.917 34 H 0.148 0.852 35 H 0.129 0.871 36 H 0.249 0.751 37 H 0.079 0.921 38 H 0.111 0.889 39 H 0.245 0.755 40 H 0.086 0.914 41 H 0.122 0.878 42 H 0.070 0.930 43 H 0.158 0.842 44 H 0.167 0.833 45 H 0.108 0.892 46 H 0.082 0.918 47 H 0.099 0.901 48 H 0.066 0.934 49 H 0.066 0.934 50 H 0.096 0.904 51 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -10.008 -8.082 -23.046 26.393 hybrid contribution 0.173 1.431 1.349 1.974 sum -9.836 -6.651 -21.697 24.733 Atomic orbital electron populations 1.22359 0.96065 1.02483 1.02204 1.21442 0.94306 0.82193 1.02921 1.46812 1.71335 1.13214 1.01984 1.17881 0.93891 0.91882 0.86199 1.20606 1.08102 1.01584 0.90367 1.20994 0.97205 0.94570 0.98324 1.17596 1.04129 0.95027 0.84385 1.42312 1.71513 1.10890 1.07343 1.15444 0.77636 0.84354 0.79856 1.90803 1.62834 1.13052 1.84136 1.48776 1.69692 1.11228 1.09628 1.23940 1.01060 0.81570 0.96965 1.19762 0.80275 0.90991 0.91126 1.86046 1.28230 1.40251 1.85460 1.21642 1.35202 1.03822 0.98085 0.90564 1.25785 0.93406 0.96971 1.00772 1.69326 1.35181 1.17174 1.34161 0.85339 0.78785 0.77237 0.78974 1.20513 1.20639 1.18901 1.23236 0.97180 0.98763 0.80198 1.20847 0.99513 1.01136 0.90218 1.20693 1.06364 0.95038 0.98150 1.21190 0.96129 0.96682 0.82809 1.22149 0.98664 1.00875 1.00048 1.22277 0.96707 1.02420 1.00399 0.91422 0.90859 0.93988 0.89148 0.91718 0.85154 0.87145 0.75149 0.92075 0.88856 0.75518 0.91358 0.87848 0.92954 0.84223 0.83274 0.89178 0.91784 0.90073 0.93397 0.93441 0.90392 0.91650 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.27 9.94 71.98 0.72 -1.55 16 2 C 0.11 1.65 5.31 86.38 0.46 2.11 16 3 N -0.62 -10.72 2.54 -673.17 -1.71 -12.43 16 4 C 0.20 4.78 6.54 38.16 0.25 5.03 16 5 C -0.18 -5.08 9.11 22.38 0.20 -4.87 16 6 C -0.09 -3.07 8.69 22.37 0.19 -2.87 16 7 C 0.08 2.78 6.30 38.09 0.24 3.02 16 8 N -0.67 -23.97 5.35 -317.01 -1.70 -25.67 16 9 C 0.72 31.62 8.64 179.05 1.55 33.16 16 10 O -0.63 -30.97 14.56 -4.00 -0.06 -31.03 16 11 N -0.66 -28.60 3.69 -877.42 -3.24 -31.84 16 12 C 0.09 3.71 7.69 83.09 0.64 4.35 16 13 C 0.22 10.60 1.57 -11.29 -0.02 10.58 16 14 O -0.59 -31.12 13.53 -148.98 -2.02 -33.14 16 15 C -0.55 -27.06 8.69 25.60 0.22 -26.84 16 16 H 0.08 3.62 7.81 -2.91 -0.02 3.59 16 17 C 0.03 1.51 5.40 84.66 0.46 1.96 16 18 N -0.92 -45.87 11.01 21.45 0.24 -45.64 16 19 Si 0.97 38.86 29.54 68.60 2.03 40.89 16 20 H -0.28 -11.23 7.11 99.48 0.71 -10.52 16 21 H -0.28 -11.03 7.11 99.48 0.71 -10.32 16 22 H -0.26 -10.26 7.11 99.48 0.71 -9.55 16 23 C 0.13 5.77 8.04 83.18 0.67 6.44 16 24 C -0.10 -2.54 9.96 22.37 0.22 -2.32 16 25 C -0.18 -4.09 9.31 22.38 0.21 -3.88 16 26 C 0.13 1.71 3.20 44.99 0.14 1.85 16 27 C -0.16 -1.63 9.07 71.98 0.65 -0.98 16 28 C -0.16 -1.63 8.43 71.98 0.61 -1.03 16 29 H 0.07 0.80 5.42 -2.39 -0.01 0.79 16 30 H 0.07 0.76 8.14 -2.38 -0.02 0.74 16 31 H 0.04 0.71 8.03 -2.39 -0.02 0.69 16 32 H 0.09 0.98 6.19 -2.38 -0.01 0.97 16 33 H 0.06 1.07 6.44 -2.39 -0.02 1.05 16 34 H 0.13 3.20 6.21 -2.91 -0.02 3.19 16 35 H 0.11 4.36 6.23 -2.91 -0.02 4.34 16 36 H 0.41 12.68 8.55 -92.71 -0.79 11.89 16 37 H 0.06 2.56 8.14 -2.39 -0.02 2.54 16 38 H 0.09 3.67 8.10 -2.39 -0.02 3.65 16 39 H 0.39 20.78 6.33 -74.06 -0.47 20.31 16 40 H 0.28 13.07 8.31 -92.71 -0.77 12.30 16 41 H 0.10 4.13 8.10 -2.39 -0.02 4.11 16 42 H 0.05 2.44 8.14 -2.39 -0.02 2.42 16 43 H 0.14 3.11 8.06 -2.91 -0.02 3.09 16 44 H 0.15 2.54 5.73 -2.91 -0.02 2.53 16 45 H 0.09 1.15 5.31 -2.38 -0.01 1.13 16 46 H 0.06 0.58 6.52 -2.39 -0.02 0.57 16 47 H 0.08 0.58 8.14 -2.39 -0.02 0.56 16 48 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 49 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 50 H 0.08 0.56 8.14 -2.39 -0.02 0.54 16 51 H 0.06 0.62 6.01 -2.39 -0.01 0.60 16 Total: -1.00 -62.93 401.77 0.67 -62.27 By element: Atomic # 1 Polarization: 52.71 SS G_CDS: -0.29 Total: 52.42 kcal Atomic # 6 Polarization: 16.76 SS G_CDS: 7.41 Total: 24.17 kcal Atomic # 7 Polarization: -109.17 SS G_CDS: -6.41 Total: -115.58 kcal Atomic # 8 Polarization: -62.09 SS G_CDS: -2.07 Total: -64.16 kcal Atomic # 14 Polarization: 38.86 SS G_CDS: 2.03 Total: 40.89 kcal Total: -62.93 0.67 -62.27 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001645960018.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.326 kcal (2) G-P(sol) polarization free energy of solvation -62.932 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.607 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.666 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.266 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.940 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds