Wall clock time and date at job start Wed Apr 1 2020 06:10:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46895 * 109.47254 * 2 1 4 4 C 1.46846 * 110.99831 * 293.95227 * 3 2 1 5 5 C 1.53045 * 109.52561 * 185.84055 * 4 3 2 6 6 C 1.53117 * 109.27479 * 300.82213 * 5 4 3 7 7 C 1.53119 * 109.16397 * 57.65503 * 6 5 4 8 8 H 1.09003 * 109.50459 * 62.31923 * 7 6 5 9 9 C 1.53003 * 109.50464 * 182.40381 * 7 6 5 10 10 N 1.46501 * 109.47074 * 294.91706 * 9 7 6 11 11 C 1.34767 * 119.99801 * 180.02562 * 10 9 7 12 12 O 1.21594 * 120.00617 * 0.02562 * 11 10 9 13 13 N 1.34778 * 119.99930 * 180.02562 * 11 10 9 14 14 C 1.40030 * 120.00069 * 174.52019 * 13 11 10 15 15 C 1.38914 * 120.00005 * 145.29954 * 14 13 11 16 16 C 1.38005 * 119.99694 * 179.97438 * 15 14 13 17 17 C 1.38902 * 120.00495 * 0.02766 * 16 15 14 18 18 O 1.35776 * 119.99889 * 179.97438 * 17 16 15 19 19 C 1.34819 * 117.00119 * 185.59890 * 18 17 16 20 20 H 1.08010 * 119.99703 * 5.37691 * 19 18 17 21 21 C 1.38624 * 120.00444 * 185.38287 * 19 18 17 22 22 N 1.31577 * 119.99672 * 0.02562 * 21 19 18 23 23 Si 1.86794 * 120.00275 * 179.97438 * 21 19 18 24 24 H 1.48506 * 109.47036 * 60.00029 * 23 21 19 25 25 H 1.48500 * 109.47333 * 179.97438 * 23 21 19 26 26 H 1.48500 * 109.47448 * 300.00080 * 23 21 19 27 27 C 1.38899 * 119.99725 * 359.95117 * 17 16 15 28 28 C 1.38005 * 120.00497 * 0.04842 * 27 17 16 29 29 C 1.46845 * 110.99819 * 58.20457 * 3 2 1 30 30 H 1.08997 * 109.46788 * 300.00125 * 1 2 3 31 31 H 1.08998 * 109.47205 * 60.00216 * 1 2 3 32 32 H 1.09001 * 109.47041 * 179.97438 * 1 2 3 33 33 H 1.09004 * 109.47401 * 239.99636 * 2 1 3 34 34 H 1.08998 * 109.47205 * 119.99784 * 2 1 3 35 35 H 1.08996 * 109.46457 * 65.82311 * 4 3 2 36 36 H 1.09000 * 109.45486 * 305.84694 * 4 3 2 37 37 H 1.08995 * 109.50320 * 180.87966 * 5 4 3 38 38 H 1.09001 * 109.50138 * 60.76237 * 5 4 3 39 39 H 1.09000 * 109.52604 * 297.74424 * 6 5 4 40 40 H 1.09001 * 109.57448 * 177.58825 * 6 5 4 41 41 H 1.08999 * 109.46517 * 174.91849 * 9 7 6 42 42 H 1.08997 * 109.47032 * 54.92425 * 9 7 6 43 43 H 0.97000 * 119.99912 * 0.02562 * 10 9 7 44 44 H 0.97003 * 120.00209 * 354.52443 * 13 11 10 45 45 H 1.08001 * 119.99632 * 359.70564 * 15 14 13 46 46 H 1.08002 * 119.99876 * 180.02562 * 16 15 14 47 47 H 0.97003 * 119.99747 * 179.97438 * 22 21 19 48 48 H 1.08007 * 119.99485 * 180.02562 * 27 17 16 49 49 H 1.08000 * 120.00179 * 179.97438 * 28 27 17 50 50 H 1.08995 * 109.49997 * 54.16270 * 29 3 2 51 51 H 1.08998 * 109.42817 * 294.19556 * 29 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.6703 2.0666 -1.2529 5 6 2.3185 3.4527 -1.2790 6 6 1.8235 4.2649 -0.0790 7 6 2.1568 3.5100 1.2108 8 1 3.2380 3.4075 1.3034 9 6 1.6124 4.2858 2.4119 10 7 2.3129 5.5677 2.5235 11 6 1.9977 6.4236 3.5156 12 8 1.1323 6.1319 4.3183 13 7 2.6417 7.6032 3.6179 14 6 2.2375 8.5407 4.5763 15 6 3.1810 9.3470 5.2003 16 6 2.7826 10.2713 6.1444 17 6 1.4382 10.3952 6.4711 18 8 1.0464 11.3043 7.4004 19 6 -0.2541 11.2946 7.7558 20 1 -0.9132 10.5300 7.3717 21 6 -0.7453 12.2660 8.6142 22 7 0.0575 13.1977 9.0816 23 14 -2.5473 12.2530 9.1060 24 1 -2.8639 10.9745 9.7922 25 1 -2.8178 13.3876 10.0250 26 1 -3.3927 12.3859 7.8924 27 6 0.4948 9.5893 5.8468 28 6 0.8931 8.6649 4.9027 29 6 1.5141 2.1218 1.1652 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8934 -0.5139 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 0.5875 2.1707 -1.3200 36 1 2.0319 1.4807 -2.0979 37 1 2.0463 3.9644 -2.2020 38 1 3.4023 3.3487 -1.2259 39 1 0.7447 4.4023 -0.1522 40 1 2.3147 5.2379 -0.0689 41 1 1.7700 3.7053 3.3209 42 1 0.5460 4.4650 2.2756 43 1 3.0035 5.8003 1.8834 44 1 3.3852 7.8027 3.0277 45 1 4.2268 9.2473 4.9498 46 1 3.5161 10.8984 6.6293 47 1 -0.2863 13.8777 9.6819 48 1 -0.5506 9.6859 6.1006 49 1 0.1595 8.0381 4.4176 50 1 1.7619 1.5768 2.0760 51 1 0.4318 2.2251 1.0872 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001647083419.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:10:36 Heat of formation + Delta-G solvation = -30.501256 kcal Electronic energy + Delta-G solvation = -29548.543361 eV Core-core repulsion = 25448.373947 eV Total energy + Delta-G solvation = -4100.169414 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -40.43352 -39.75802 -38.69693 -36.79587 -35.80782 -33.98958 -33.75716 -32.16136 -31.58284 -30.14885 -29.89505 -27.95919 -26.07150 -25.30283 -25.06906 -22.81853 -22.41552 -21.80683 -21.25431 -20.44943 -19.83768 -18.48321 -17.85153 -17.36066 -16.50333 -16.23015 -15.78826 -15.56472 -15.19462 -15.03183 -14.83763 -14.50316 -14.45114 -14.14881 -14.08550 -13.66547 -13.61241 -13.43748 -13.29485 -12.82348 -12.78673 -12.60208 -12.50287 -12.35103 -12.21055 -11.76806 -11.68091 -11.51386 -11.48077 -11.16460 -11.07243 -10.99208 -10.84248 -10.72687 -10.67318 -10.40459 -9.98582 -9.65337 -9.15852 -9.12619 -8.73791 -8.64259 -8.15154 -6.85718 -6.39710 -3.97128 2.20054 2.28988 2.73097 3.17824 3.18195 3.21460 3.39188 3.45887 4.02111 4.21664 4.31322 4.34165 4.41697 4.56150 4.63592 4.74595 4.75616 4.87626 4.92118 4.96376 5.10548 5.15944 5.19434 5.26857 5.27653 5.30217 5.40032 5.43346 5.47210 5.54904 5.63151 5.70459 5.71942 5.72701 5.76248 5.80834 5.98503 6.18983 6.23091 6.32741 6.40460 6.62884 6.63383 6.73111 6.79137 7.00868 7.16032 7.25149 7.37682 7.49243 7.84329 8.05237 8.09703 8.73223 9.06204 9.76290 10.78299 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.020842 B = 0.001659 C = 0.001578 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1343.105407 B =16871.267363 C =17734.502595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.051 3.949 3 N -0.536 5.536 4 C 0.052 3.948 5 C -0.117 4.117 6 C -0.117 4.117 7 C -0.096 4.096 8 H 0.086 0.914 9 C 0.145 3.855 10 N -0.747 5.747 11 C 0.698 3.302 12 O -0.575 6.575 13 N -0.676 5.676 14 C 0.057 3.943 15 C -0.096 4.096 16 C -0.177 4.177 17 C 0.144 3.856 18 O -0.178 6.178 19 C -0.389 4.389 20 H 0.091 0.909 21 C 0.039 3.961 22 N -0.864 5.864 23 Si 0.940 3.060 24 H -0.270 1.270 25 H -0.278 1.278 26 H -0.270 1.270 27 C -0.217 4.217 28 C -0.064 4.064 29 C 0.061 3.939 30 H 0.059 0.941 31 H 0.055 0.945 32 H 0.061 0.939 33 H 0.075 0.925 34 H 0.077 0.923 35 H 0.036 0.964 36 H 0.073 0.927 37 H 0.067 0.933 38 H 0.071 0.929 39 H 0.062 0.938 40 H 0.066 0.934 41 H 0.067 0.933 42 H 0.065 0.935 43 H 0.394 0.606 44 H 0.397 0.603 45 H 0.114 0.886 46 H 0.121 0.879 47 H 0.270 0.730 48 H 0.130 0.870 49 H 0.119 0.881 50 H 0.078 0.922 51 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.364 -22.641 -22.186 32.150 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.254 4.254 2 C -0.077 4.077 3 N -0.260 5.260 4 C -0.076 4.076 5 C -0.155 4.155 6 C -0.155 4.155 7 C -0.115 4.115 8 H 0.104 0.896 9 C 0.020 3.980 10 N -0.403 5.403 11 C 0.399 3.601 12 O -0.451 6.451 13 N -0.324 5.324 14 C -0.036 4.036 15 C -0.116 4.116 16 C -0.197 4.197 17 C 0.090 3.910 18 O -0.082 6.082 19 C -0.466 4.466 20 H 0.108 0.892 21 C -0.165 4.165 22 N -0.499 5.499 23 Si 0.765 3.235 24 H -0.195 1.195 25 H -0.203 1.203 26 H -0.195 1.195 27 C -0.237 4.237 28 C -0.084 4.084 29 C -0.067 4.067 30 H 0.078 0.922 31 H 0.074 0.926 32 H 0.080 0.920 33 H 0.093 0.907 34 H 0.095 0.905 35 H 0.054 0.946 36 H 0.091 0.909 37 H 0.086 0.914 38 H 0.090 0.910 39 H 0.081 0.919 40 H 0.084 0.916 41 H 0.085 0.915 42 H 0.083 0.917 43 H 0.228 0.772 44 H 0.231 0.769 45 H 0.132 0.868 46 H 0.139 0.861 47 H 0.079 0.921 48 H 0.147 0.853 49 H 0.137 0.863 50 H 0.097 0.903 51 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 5.151 -22.576 -21.141 31.355 hybrid contribution -1.160 0.118 -0.470 1.257 sum 3.991 -22.459 -21.611 31.422 Atomic orbital electron populations 1.22454 0.98137 1.02519 1.02240 1.22156 0.92975 0.89687 1.02921 1.62099 1.59460 1.02068 1.02368 1.22123 0.98154 0.95295 0.92022 1.21590 1.01292 0.94547 0.98070 1.21656 1.01417 0.98514 0.93883 1.21418 1.01690 0.94174 0.94204 0.89566 1.21123 0.96368 0.82883 0.97587 1.45046 1.43652 1.19574 1.32077 1.15952 0.82419 0.80051 0.81716 1.90960 1.34715 1.76408 1.43065 1.42324 1.36661 1.15269 1.38109 1.17013 0.93066 0.95854 0.97687 1.20325 0.97248 0.97356 0.96691 1.19969 0.93684 1.03313 1.02711 1.19403 0.92851 0.89757 0.88950 1.83986 1.28358 1.47690 1.48120 1.21271 0.83193 1.13643 1.28469 0.89158 1.25265 1.00117 0.94808 0.96339 1.70040 1.35394 1.13998 1.30491 0.85793 0.80654 0.78282 0.78790 1.19497 1.20333 1.19535 1.21084 1.00395 1.00574 1.01688 1.20704 0.93886 0.96489 0.97322 1.22013 0.97352 0.93524 0.93825 0.92155 0.92567 0.92005 0.90694 0.90499 0.94592 0.90878 0.91427 0.91027 0.91887 0.91551 0.91468 0.91660 0.77238 0.76921 0.86792 0.86082 0.92057 0.85259 0.86285 0.90323 0.94011 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.02 9.21 37.16 0.34 -0.67 16 2 C 0.05 0.27 6.08 -3.83 -0.02 0.25 16 3 N -0.54 -3.46 4.86 -234.67 -1.14 -4.60 16 4 C 0.05 0.30 5.05 -3.83 -0.02 0.28 16 5 C -0.12 -0.64 6.09 -26.65 -0.16 -0.80 16 6 C -0.12 -0.71 5.13 -26.61 -0.14 -0.85 16 7 C -0.10 -0.63 2.39 -90.53 -0.22 -0.85 16 8 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 9 C 0.15 1.32 5.07 -4.04 -0.02 1.30 16 10 N -0.75 -7.40 5.31 -65.22 -0.35 -7.75 16 11 C 0.70 10.33 8.29 -86.93 -0.72 9.61 16 12 O -0.58 -11.23 14.13 5.28 0.07 -11.15 16 13 N -0.68 -9.45 5.35 -14.18 -0.08 -9.53 16 14 C 0.06 1.03 6.25 -83.61 -0.52 0.51 16 15 C -0.10 -1.70 9.96 -39.42 -0.39 -2.10 16 16 C -0.18 -3.74 9.98 -39.42 -0.39 -4.14 16 17 C 0.14 3.57 6.65 -39.09 -0.26 3.31 16 18 O -0.18 -5.16 9.76 0.00 0.00 -5.16 16 19 C -0.39 -11.12 9.44 30.87 0.29 -10.83 16 20 H 0.09 2.41 5.29 -52.48 -0.28 2.13 16 21 C 0.04 1.08 5.49 -17.52 -0.10 0.99 16 22 N -0.86 -25.61 13.67 55.48 0.76 -24.86 16 23 Si 0.94 21.00 29.55 -169.99 -5.02 15.97 16 24 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 25 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 26 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 27 C -0.22 -5.03 9.13 -39.42 -0.36 -5.39 16 28 C -0.06 -1.32 8.64 -39.42 -0.34 -1.66 16 29 C 0.06 0.41 4.12 -3.83 -0.02 0.39 16 30 H 0.06 0.35 6.50 -51.93 -0.34 0.02 16 31 H 0.06 0.31 6.68 -51.93 -0.35 -0.04 16 32 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 33 H 0.07 0.36 8.06 -51.93 -0.42 -0.06 16 34 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 35 H 0.04 0.22 6.75 -51.93 -0.35 -0.13 16 36 H 0.07 0.38 8.06 -51.93 -0.42 -0.04 16 37 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 38 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 39 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 40 H 0.07 0.38 7.26 -51.93 -0.38 0.00 16 41 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 42 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 43 H 0.39 2.70 7.69 -40.82 -0.31 2.39 16 44 H 0.40 3.94 8.84 -40.82 -0.36 3.58 16 45 H 0.11 1.61 8.06 -52.49 -0.42 1.18 16 46 H 0.12 2.42 8.06 -52.49 -0.42 2.00 16 47 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 48 H 0.13 3.01 5.70 -52.48 -0.30 2.71 16 49 H 0.12 2.46 6.52 -52.49 -0.34 2.12 16 50 H 0.08 0.52 8.12 -51.93 -0.42 0.10 16 51 H 0.04 0.29 6.60 -51.93 -0.34 -0.05 16 LS Contribution 402.57 15.07 6.07 6.07 Total: -1.00 -34.17 402.57 -10.70 -44.87 By element: Atomic # 1 Polarization: 14.74 SS G_CDS: -7.97 Total: 6.77 kcal Atomic # 6 Polarization: -7.60 SS G_CDS: -3.05 Total: -10.64 kcal Atomic # 7 Polarization: -45.93 SS G_CDS: -0.80 Total: -46.73 kcal Atomic # 8 Polarization: -16.39 SS G_CDS: 0.07 Total: -16.31 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.97 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -34.17 -10.70 -44.87 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001647083419.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.372 kcal (2) G-P(sol) polarization free energy of solvation -34.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.800 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.702 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.873 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.501 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds