Wall clock time and date at job start Wed Apr 1 2020 06:10:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46895 * 109.47254 * 2 1 4 4 C 1.46846 * 110.99831 * 293.95227 * 3 2 1 5 5 C 1.53045 * 109.52561 * 185.84055 * 4 3 2 6 6 C 1.53117 * 109.27479 * 300.82213 * 5 4 3 7 7 C 1.53119 * 109.16397 * 57.65503 * 6 5 4 8 8 H 1.09003 * 109.50459 * 62.31923 * 7 6 5 9 9 C 1.53003 * 109.50464 * 182.40381 * 7 6 5 10 10 N 1.46501 * 109.47074 * 294.91706 * 9 7 6 11 11 C 1.34767 * 119.99801 * 180.02562 * 10 9 7 12 12 O 1.21594 * 120.00617 * 0.02562 * 11 10 9 13 13 N 1.34778 * 119.99930 * 180.02562 * 11 10 9 14 14 C 1.40030 * 120.00069 * 174.52019 * 13 11 10 15 15 C 1.38914 * 120.00005 * 145.29954 * 14 13 11 16 16 C 1.38005 * 119.99694 * 179.97438 * 15 14 13 17 17 C 1.38902 * 120.00495 * 0.02766 * 16 15 14 18 18 O 1.35776 * 119.99889 * 179.97438 * 17 16 15 19 19 C 1.34819 * 117.00119 * 185.59890 * 18 17 16 20 20 H 1.08010 * 119.99703 * 5.37691 * 19 18 17 21 21 C 1.38624 * 120.00444 * 185.38287 * 19 18 17 22 22 N 1.31577 * 119.99672 * 0.02562 * 21 19 18 23 23 Si 1.86794 * 120.00275 * 179.97438 * 21 19 18 24 24 H 1.48506 * 109.47036 * 60.00029 * 23 21 19 25 25 H 1.48500 * 109.47333 * 179.97438 * 23 21 19 26 26 H 1.48500 * 109.47448 * 300.00080 * 23 21 19 27 27 C 1.38899 * 119.99725 * 359.95117 * 17 16 15 28 28 C 1.38005 * 120.00497 * 0.04842 * 27 17 16 29 29 C 1.46845 * 110.99819 * 58.20457 * 3 2 1 30 30 H 1.08997 * 109.46788 * 300.00125 * 1 2 3 31 31 H 1.08998 * 109.47205 * 60.00216 * 1 2 3 32 32 H 1.09001 * 109.47041 * 179.97438 * 1 2 3 33 33 H 1.09004 * 109.47401 * 239.99636 * 2 1 3 34 34 H 1.08998 * 109.47205 * 119.99784 * 2 1 3 35 35 H 1.08996 * 109.46457 * 65.82311 * 4 3 2 36 36 H 1.09000 * 109.45486 * 305.84694 * 4 3 2 37 37 H 1.08995 * 109.50320 * 180.87966 * 5 4 3 38 38 H 1.09001 * 109.50138 * 60.76237 * 5 4 3 39 39 H 1.09000 * 109.52604 * 297.74424 * 6 5 4 40 40 H 1.09001 * 109.57448 * 177.58825 * 6 5 4 41 41 H 1.08999 * 109.46517 * 174.91849 * 9 7 6 42 42 H 1.08997 * 109.47032 * 54.92425 * 9 7 6 43 43 H 0.97000 * 119.99912 * 0.02562 * 10 9 7 44 44 H 0.97003 * 120.00209 * 354.52443 * 13 11 10 45 45 H 1.08001 * 119.99632 * 359.70564 * 15 14 13 46 46 H 1.08002 * 119.99876 * 180.02562 * 16 15 14 47 47 H 0.97003 * 119.99747 * 179.97438 * 22 21 19 48 48 H 1.08007 * 119.99485 * 180.02562 * 27 17 16 49 49 H 1.08000 * 120.00179 * 179.97438 * 28 27 17 50 50 H 1.08995 * 109.49997 * 54.16270 * 29 3 2 51 51 H 1.08998 * 109.42817 * 294.19556 * 29 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.6703 2.0666 -1.2529 5 6 2.3185 3.4527 -1.2790 6 6 1.8235 4.2649 -0.0790 7 6 2.1568 3.5100 1.2108 8 1 3.2380 3.4075 1.3034 9 6 1.6124 4.2858 2.4119 10 7 2.3129 5.5677 2.5235 11 6 1.9977 6.4236 3.5156 12 8 1.1323 6.1319 4.3183 13 7 2.6417 7.6032 3.6179 14 6 2.2375 8.5407 4.5763 15 6 3.1810 9.3470 5.2003 16 6 2.7826 10.2713 6.1444 17 6 1.4382 10.3952 6.4711 18 8 1.0464 11.3043 7.4004 19 6 -0.2541 11.2946 7.7558 20 1 -0.9132 10.5300 7.3717 21 6 -0.7453 12.2660 8.6142 22 7 0.0575 13.1977 9.0816 23 14 -2.5473 12.2530 9.1060 24 1 -2.8639 10.9745 9.7922 25 1 -2.8178 13.3876 10.0250 26 1 -3.3927 12.3859 7.8924 27 6 0.4948 9.5893 5.8468 28 6 0.8931 8.6649 4.9027 29 6 1.5141 2.1218 1.1652 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8934 -0.5139 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 0.5875 2.1707 -1.3200 36 1 2.0319 1.4807 -2.0979 37 1 2.0463 3.9644 -2.2020 38 1 3.4023 3.3487 -1.2259 39 1 0.7447 4.4023 -0.1522 40 1 2.3147 5.2379 -0.0689 41 1 1.7700 3.7053 3.3209 42 1 0.5460 4.4650 2.2756 43 1 3.0035 5.8003 1.8834 44 1 3.3852 7.8027 3.0277 45 1 4.2268 9.2473 4.9498 46 1 3.5161 10.8984 6.6293 47 1 -0.2863 13.8777 9.6819 48 1 -0.5506 9.6859 6.1006 49 1 0.1595 8.0381 4.4176 50 1 1.7619 1.5768 2.0760 51 1 0.4318 2.2251 1.0872 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001647083419.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:10:35 Heat of formation + Delta-G solvation = -54.657050 kcal Electronic energy + Delta-G solvation = -29549.590835 eV Core-core repulsion = 25448.373947 eV Total energy + Delta-G solvation = -4101.216888 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.64085 -40.62396 -40.19108 -38.34283 -36.71692 -35.38971 -34.58484 -34.10853 -32.30154 -31.83348 -30.38428 -29.46728 -27.38043 -26.68168 -25.73631 -23.99338 -23.34969 -23.16176 -22.03490 -21.75566 -20.41797 -20.03059 -19.39885 -18.92100 -18.10092 -16.90577 -16.66831 -16.50898 -16.28909 -16.12952 -15.83522 -15.65999 -15.51456 -15.34281 -15.30074 -15.15909 -14.81129 -14.59191 -14.35906 -14.06842 -13.84744 -13.57616 -13.36831 -13.25035 -13.20696 -13.06760 -12.94166 -12.70844 -12.65400 -12.39477 -12.25175 -12.13926 -11.62002 -11.59364 -11.50465 -11.37342 -11.30610 -11.22637 -10.93496 -10.56014 -10.08606 -9.81830 -9.22802 -8.54872 -8.45659 -6.11958 0.54925 0.60711 1.35119 1.44829 1.50765 1.62991 2.11771 2.19089 2.84898 2.93722 3.18461 3.29043 3.53932 3.72955 3.78863 3.89651 4.09850 4.11882 4.14259 4.24825 4.29845 4.38741 4.42006 4.48935 4.50845 4.57164 4.61344 4.66908 4.68149 4.76721 4.80434 4.88551 4.95764 4.97700 5.03811 5.07913 5.14698 5.15769 5.18952 5.27391 5.28445 5.36111 5.41416 5.43954 5.52385 5.63668 5.72419 6.01622 6.04659 6.14050 6.17742 6.21552 6.99089 7.07090 7.56274 7.79035 8.76959 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.020842 B = 0.001659 C = 0.001578 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1343.105407 B =16871.267363 C =17734.502595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.050 3.950 3 N -0.542 5.542 4 C 0.050 3.950 5 C -0.113 4.113 6 C -0.116 4.116 7 C -0.081 4.081 8 H 0.093 0.907 9 C 0.147 3.853 10 N -0.721 5.721 11 C 0.696 3.304 12 O -0.624 6.624 13 N -0.662 5.662 14 C 0.085 3.915 15 C -0.079 4.079 16 C -0.177 4.177 17 C 0.104 3.896 18 O -0.228 6.228 19 C -0.413 4.413 20 H 0.095 0.905 21 C -0.020 4.020 22 N -0.917 5.917 23 Si 1.015 2.985 24 H -0.261 1.261 25 H -0.268 1.268 26 H -0.259 1.259 27 C -0.226 4.226 28 C -0.076 4.076 29 C 0.062 3.938 30 H 0.050 0.950 31 H 0.053 0.947 32 H 0.068 0.932 33 H 0.083 0.917 34 H 0.077 0.923 35 H 0.031 0.969 36 H 0.080 0.920 37 H 0.076 0.924 38 H 0.073 0.927 39 H 0.053 0.947 40 H 0.075 0.925 41 H 0.057 0.943 42 H 0.052 0.948 43 H 0.414 0.586 44 H 0.423 0.577 45 H 0.167 0.833 46 H 0.130 0.870 47 H 0.273 0.727 48 H 0.115 0.885 49 H 0.119 0.881 50 H 0.077 0.923 51 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.722 -24.575 -24.737 35.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.249 4.249 2 C -0.078 4.078 3 N -0.266 5.266 4 C -0.078 4.078 5 C -0.151 4.151 6 C -0.154 4.154 7 C -0.101 4.101 8 H 0.111 0.889 9 C 0.022 3.978 10 N -0.378 5.378 11 C 0.396 3.604 12 O -0.504 6.504 13 N -0.312 5.312 14 C -0.010 4.010 15 C -0.099 4.099 16 C -0.197 4.197 17 C 0.053 3.947 18 O -0.134 6.134 19 C -0.489 4.489 20 H 0.112 0.888 21 C -0.218 4.218 22 N -0.555 5.555 23 Si 0.834 3.166 24 H -0.186 1.186 25 H -0.193 1.193 26 H -0.183 1.183 27 C -0.246 4.246 28 C -0.096 4.096 29 C -0.067 4.067 30 H 0.069 0.931 31 H 0.072 0.928 32 H 0.087 0.913 33 H 0.101 0.899 34 H 0.096 0.904 35 H 0.049 0.951 36 H 0.098 0.902 37 H 0.095 0.905 38 H 0.091 0.909 39 H 0.072 0.928 40 H 0.093 0.907 41 H 0.075 0.925 42 H 0.071 0.929 43 H 0.251 0.749 44 H 0.261 0.739 45 H 0.185 0.815 46 H 0.148 0.852 47 H 0.082 0.918 48 H 0.133 0.867 49 H 0.137 0.863 50 H 0.095 0.905 51 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 6.582 -24.571 -23.804 34.838 hybrid contribution -1.390 0.431 0.047 1.456 sum 5.193 -24.139 -23.757 34.265 Atomic orbital electron populations 1.22405 0.98106 1.02787 1.01604 1.22196 0.92962 0.89271 1.03377 1.62126 1.59545 1.02484 1.02424 1.22169 0.97942 0.95689 0.91962 1.21566 1.01241 0.94183 0.98092 1.21654 1.00961 0.98962 0.93777 1.21287 1.01757 0.93762 0.93246 0.88863 1.21160 0.95792 0.82410 0.98400 1.44835 1.43429 1.18830 1.30749 1.16146 0.81771 0.80473 0.82006 1.90949 1.36826 1.77445 1.45146 1.42101 1.37258 1.14294 1.37581 1.17123 0.92082 0.95063 0.96687 1.20748 0.99629 0.95113 0.94452 1.20315 0.92354 1.03873 1.03159 1.19928 0.94718 0.90287 0.89756 1.83942 1.28597 1.50133 1.50767 1.21693 0.83650 1.14356 1.29240 0.88762 1.26503 1.05249 0.94077 0.95966 1.70173 1.37853 1.15341 1.32152 0.84702 0.74251 0.78767 0.78837 1.18573 1.19252 1.18304 1.21066 0.99736 1.01284 1.02549 1.20762 0.95517 0.96140 0.97221 1.21977 0.96989 0.93606 0.94108 0.93087 0.92844 0.91301 0.89884 0.90410 0.95114 0.90153 0.90502 0.90852 0.92838 0.90672 0.92470 0.92946 0.74893 0.73869 0.81541 0.85246 0.91817 0.86680 0.86342 0.90477 0.94685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.79 9.21 71.98 0.66 -1.13 16 2 C 0.05 0.46 6.08 86.30 0.52 0.99 16 3 N -0.54 -6.02 4.86 -896.37 -4.35 -10.37 16 4 C 0.05 0.48 5.05 86.33 0.44 0.92 16 5 C -0.11 -0.94 6.09 30.65 0.19 -0.75 16 6 C -0.12 -1.12 5.13 30.67 0.16 -0.96 16 7 C -0.08 -0.89 2.39 -10.74 -0.03 -0.92 16 8 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 9 C 0.15 2.43 5.07 86.38 0.44 2.87 16 10 N -0.72 -12.17 5.31 -478.54 -2.54 -14.71 16 11 C 0.70 18.79 8.29 179.06 1.48 20.28 16 12 O -0.62 -23.69 14.13 -4.01 -0.06 -23.75 16 13 N -0.66 -16.02 5.35 -317.04 -1.70 -17.72 16 14 C 0.08 2.87 6.25 38.15 0.24 3.11 16 15 C -0.08 -2.55 9.96 22.38 0.22 -2.33 16 16 C -0.18 -7.38 9.98 22.37 0.22 -7.15 16 17 C 0.10 5.31 6.65 22.59 0.15 5.46 16 18 O -0.23 -13.96 9.76 -22.92 -0.22 -14.18 16 19 C -0.41 -24.86 9.44 67.91 0.64 -24.22 16 20 H 0.10 5.34 5.29 -2.91 -0.02 5.32 16 21 C -0.02 -1.17 5.49 84.82 0.47 -0.71 16 22 N -0.92 -56.85 13.67 21.61 0.30 -56.56 16 23 Si 1.02 44.28 29.55 68.60 2.03 46.31 16 24 H -0.26 -10.88 7.11 99.48 0.71 -10.18 16 25 H -0.27 -11.10 7.11 99.48 0.71 -10.39 16 26 H -0.26 -10.65 7.11 99.48 0.71 -9.95 16 27 C -0.23 -10.83 9.13 22.37 0.20 -10.62 16 28 C -0.08 -3.13 8.64 22.37 0.19 -2.93 16 29 C 0.06 0.73 4.12 86.33 0.36 1.09 16 30 H 0.05 0.57 6.50 -2.39 -0.02 0.56 16 31 H 0.05 0.53 6.68 -2.39 -0.02 0.51 16 32 H 0.07 0.54 8.14 -2.39 -0.02 0.52 16 33 H 0.08 0.65 8.06 -2.39 -0.02 0.63 16 34 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 35 H 0.03 0.33 6.75 -2.39 -0.02 0.32 16 36 H 0.08 0.66 8.06 -2.39 -0.02 0.64 16 37 H 0.08 0.52 8.14 -2.39 -0.02 0.50 16 38 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 39 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 40 H 0.07 0.60 7.26 -2.39 -0.02 0.58 16 41 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 42 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 43 H 0.41 3.94 7.69 -92.71 -0.71 3.22 16 44 H 0.42 6.15 8.84 -92.71 -0.82 5.33 16 45 H 0.17 3.68 8.06 -2.91 -0.02 3.66 16 46 H 0.13 5.11 8.06 -2.91 -0.02 5.08 16 47 H 0.27 15.50 8.31 -92.71 -0.77 14.73 16 48 H 0.12 5.69 5.70 -2.91 -0.02 5.67 16 49 H 0.12 4.90 6.52 -2.91 -0.02 4.88 16 50 H 0.08 0.94 8.12 -2.39 -0.02 0.92 16 51 H 0.03 0.47 6.60 -2.39 -0.02 0.45 16 Total: -1.00 -79.46 402.57 -0.56 -80.02 By element: Atomic # 1 Polarization: 28.54 SS G_CDS: -0.57 Total: 27.97 kcal Atomic # 6 Polarization: -23.58 SS G_CDS: 6.56 Total: -17.02 kcal Atomic # 7 Polarization: -91.06 SS G_CDS: -8.29 Total: -99.35 kcal Atomic # 8 Polarization: -37.65 SS G_CDS: -0.28 Total: -37.93 kcal Atomic # 14 Polarization: 44.28 SS G_CDS: 2.03 Total: 46.31 kcal Total: -79.46 -0.56 -80.02 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001647083419.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.361 kcal (2) G-P(sol) polarization free energy of solvation -79.456 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.095 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.562 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.018 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.657 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds