Wall clock time and date at job start Wed Apr 1 2020 06:10:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 N 1.46903 * 109.47392 * 2 1 4 4 C 1.46846 * 110.99858 * 314.21188 * 3 2 1 5 5 C 1.53036 * 109.51988 * 174.15504 * 4 3 2 6 6 C 1.53118 * 109.27824 * 59.17949 * 5 4 3 7 7 C 1.53116 * 109.15291 * 302.33831 * 6 5 4 8 8 H 1.09002 * 109.50838 * 297.71926 * 7 6 5 9 9 C 1.52997 * 109.49470 * 177.60701 * 7 6 5 10 10 N 1.46507 * 109.47383 * 65.20111 * 9 7 6 11 11 C 1.34771 * 119.99979 * 179.97438 * 10 9 7 12 12 O 1.21594 * 120.00104 * 0.02562 * 11 10 9 13 13 N 1.34783 * 119.99882 * 179.97438 * 11 10 9 14 14 C 1.40028 * 119.99930 * 175.49689 * 13 11 10 15 15 C 1.38906 * 119.99687 * 214.85414 * 14 13 11 16 16 C 1.38013 * 119.99653 * 179.79110 * 15 14 13 17 17 C 1.38903 * 120.00109 * 0.46157 * 16 15 14 18 18 O 1.35782 * 120.00074 * 179.77133 * 17 16 15 19 19 C 1.34816 * 117.00083 * 185.36584 * 18 17 16 20 20 H 1.07998 * 119.99865 * 354.95809 * 19 18 17 21 21 C 1.38625 * 119.99871 * 174.96407 * 19 18 17 22 22 N 1.31578 * 120.00246 * 359.97438 * 21 19 18 23 23 Si 1.86806 * 119.99896 * 179.97438 * 21 19 18 24 24 H 1.48499 * 109.46810 * 89.99618 * 23 21 19 25 25 H 1.48500 * 109.47193 * 209.99657 * 23 21 19 26 26 H 1.48501 * 109.46818 * 329.99973 * 23 21 19 27 27 C 1.38904 * 120.00151 * 359.78999 * 17 16 15 28 28 C 1.38013 * 120.00127 * 359.97438 * 27 17 16 29 29 C 1.46839 * 111.00316 * 189.99720 * 3 2 1 30 30 H 1.09004 * 109.47242 * 179.97438 * 1 2 3 31 31 H 1.08994 * 109.47185 * 299.99852 * 1 2 3 32 32 H 1.09008 * 109.47326 * 59.99861 * 1 2 3 33 33 H 1.09004 * 109.47653 * 240.00395 * 2 1 3 34 34 H 1.08998 * 109.47243 * 120.00043 * 2 1 3 35 35 H 1.08998 * 109.46384 * 294.17279 * 4 3 2 36 36 H 1.09001 * 109.46292 * 54.14329 * 4 3 2 37 37 H 1.09004 * 109.50150 * 179.11863 * 5 4 3 38 38 H 1.08996 * 109.50811 * 299.19401 * 5 4 3 39 39 H 1.09009 * 109.52248 * 62.25005 * 6 5 4 40 40 H 1.08998 * 109.52394 * 182.37245 * 6 5 4 41 41 H 1.09000 * 109.47508 * 185.19987 * 9 7 6 42 42 H 1.09001 * 109.47225 * 305.19684 * 9 7 6 43 43 H 0.96996 * 119.99855 * 359.97438 * 10 9 7 44 44 H 0.96996 * 119.99727 * 355.49457 * 13 11 10 45 45 H 1.08004 * 120.00627 * 0.02562 * 15 14 13 46 46 H 1.08001 * 120.00098 * 180.22910 * 16 15 14 47 47 H 0.97000 * 119.99585 * 180.02562 * 22 21 19 48 48 H 1.07997 * 120.00137 * 179.97438 * 27 17 16 49 49 H 1.07996 * 120.00365 * 179.97438 * 28 27 17 50 50 H 1.09003 * 109.46818 * 305.85854 * 29 3 2 51 51 H 1.09003 * 109.46629 * 65.83614 * 29 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.2938 2.1998 -0.9826 5 6 1.7264 3.6621 -0.8538 6 6 3.2354 3.7657 -1.0920 7 6 3.9653 2.8705 -0.0868 8 1 3.7641 3.2207 0.9256 9 6 5.4705 2.9218 -0.3563 10 7 5.9674 4.2751 -0.0955 11 6 7.2740 4.5578 -0.2665 12 8 8.0403 3.6897 -0.6377 13 7 7.7311 5.8029 -0.0271 14 6 9.1022 6.0740 -0.1132 15 6 9.6831 6.9965 0.7476 16 6 11.0353 7.2605 0.6656 17 6 11.8134 6.6109 -0.2840 18 8 13.1429 6.8740 -0.3678 19 6 13.8188 6.2953 -1.3805 20 1 13.3196 5.5920 -2.0306 21 6 15.1546 6.6028 -1.5874 22 7 15.7626 7.4600 -0.7957 23 14 16.0913 5.8003 -2.9903 24 1 15.9664 6.6365 -4.2111 25 1 17.5241 5.6746 -2.6208 26 1 15.5280 4.4519 -3.2542 27 6 11.2315 5.6922 -1.1483 28 6 9.8803 5.4245 -1.0631 29 6 3.4679 1.4311 -0.2380 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8899 32 1 -0.3634 0.5139 -0.8900 33 1 1.8934 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 1.5177 1.8419 -1.9876 36 1 0.2222 2.1206 -0.7995 37 1 1.1990 4.2641 -1.5938 38 1 1.4895 4.0250 0.1462 39 1 3.4674 3.4397 -2.1060 40 1 3.5549 4.7994 -0.9597 41 1 5.9810 2.2150 0.2978 42 1 5.6626 2.6583 -1.3963 43 1 5.3561 4.9677 0.2003 44 1 7.1103 6.5111 0.2048 45 1 9.0774 7.5044 1.4836 46 1 11.4877 7.9751 1.3373 47 1 16.6972 7.6754 -0.9408 48 1 11.8365 5.1874 -1.8869 49 1 9.4278 4.7106 -1.7353 50 1 3.9755 0.7936 0.4860 51 1 3.6818 1.0770 -1.2465 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001647083420.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:10:40 Heat of formation + Delta-G solvation = -27.355190 kcal Electronic energy + Delta-G solvation = -29397.390062 eV Core-core repulsion = 25297.357072 eV Total energy + Delta-G solvation = -4100.032990 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.42082 -39.69302 -38.68729 -36.79318 -35.82074 -33.99040 -33.71106 -32.15380 -31.68560 -30.25016 -30.11767 -27.91498 -26.20131 -25.22585 -24.63325 -23.11037 -22.33193 -21.61774 -21.02079 -20.49258 -20.08969 -18.46200 -17.84356 -17.34456 -16.61352 -16.45331 -15.71784 -15.57964 -15.45986 -14.86027 -14.69083 -14.44550 -14.39241 -14.34451 -13.91307 -13.75439 -13.55129 -13.50348 -13.33540 -12.87427 -12.81368 -12.65715 -12.48472 -12.12469 -12.06296 -11.68925 -11.59434 -11.55674 -11.48488 -11.45547 -11.06684 -10.97676 -10.78609 -10.71446 -10.68800 -10.39642 -9.92323 -9.63141 -9.14499 -9.12406 -8.76216 -8.63250 -8.13820 -6.85972 -6.39511 -3.97019 2.20332 2.30955 2.72256 3.16652 3.18391 3.23283 3.38080 3.42232 4.02177 4.21117 4.30065 4.33645 4.41713 4.62114 4.64543 4.66527 4.75189 4.89425 4.96862 4.98499 5.10117 5.14829 5.18760 5.24320 5.29960 5.31827 5.33999 5.48108 5.50916 5.54366 5.62696 5.66331 5.70490 5.73280 5.78211 5.82381 5.97767 6.19019 6.24344 6.32565 6.42911 6.62557 6.63482 6.73538 6.80007 7.02215 7.16629 7.25548 7.39876 7.50535 7.85408 8.05626 8.10117 8.72926 9.06567 9.76688 10.78606 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.025469 B = 0.001571 C = 0.001517 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1099.122415 B =17817.324458 C =18455.228532 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.050 3.950 3 N -0.538 5.538 4 C 0.047 3.953 5 C -0.117 4.117 6 C -0.117 4.117 7 C -0.095 4.095 8 H 0.087 0.913 9 C 0.145 3.855 10 N -0.747 5.747 11 C 0.699 3.301 12 O -0.576 6.576 13 N -0.675 5.675 14 C 0.053 3.947 15 C -0.096 4.096 16 C -0.178 4.178 17 C 0.145 3.855 18 O -0.179 6.179 19 C -0.390 4.390 20 H 0.092 0.908 21 C 0.039 3.961 22 N -0.864 5.864 23 Si 0.940 3.060 24 H -0.274 1.274 25 H -0.278 1.278 26 H -0.267 1.267 27 C -0.219 4.219 28 C -0.064 4.064 29 C 0.064 3.936 30 H 0.060 0.940 31 H 0.064 0.936 32 H 0.058 0.942 33 H 0.033 0.967 34 H 0.076 0.924 35 H 0.032 0.968 36 H 0.081 0.919 37 H 0.067 0.933 38 H 0.071 0.929 39 H 0.062 0.938 40 H 0.066 0.934 41 H 0.067 0.933 42 H 0.065 0.935 43 H 0.394 0.606 44 H 0.397 0.603 45 H 0.114 0.886 46 H 0.121 0.879 47 H 0.269 0.731 48 H 0.130 0.870 49 H 0.126 0.874 50 H 0.079 0.921 51 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.546 -9.178 0.935 32.867 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.077 4.077 3 N -0.263 5.263 4 C -0.080 4.080 5 C -0.155 4.155 6 C -0.155 4.155 7 C -0.114 4.114 8 H 0.105 0.895 9 C 0.020 3.980 10 N -0.403 5.403 11 C 0.399 3.601 12 O -0.452 6.452 13 N -0.323 5.323 14 C -0.040 4.040 15 C -0.116 4.116 16 C -0.198 4.198 17 C 0.091 3.909 18 O -0.082 6.082 19 C -0.466 4.466 20 H 0.109 0.891 21 C -0.165 4.165 22 N -0.500 5.500 23 Si 0.765 3.235 24 H -0.199 1.199 25 H -0.203 1.203 26 H -0.192 1.192 27 C -0.239 4.239 28 C -0.085 4.085 29 C -0.065 4.065 30 H 0.079 0.921 31 H 0.083 0.917 32 H 0.076 0.924 33 H 0.051 0.949 34 H 0.095 0.905 35 H 0.050 0.950 36 H 0.099 0.901 37 H 0.086 0.914 38 H 0.090 0.910 39 H 0.081 0.919 40 H 0.084 0.916 41 H 0.086 0.914 42 H 0.083 0.917 43 H 0.228 0.772 44 H 0.231 0.769 45 H 0.132 0.868 46 H 0.139 0.861 47 H 0.079 0.921 48 H 0.147 0.853 49 H 0.144 0.856 50 H 0.097 0.903 51 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -30.555 -9.602 1.219 32.051 hybrid contribution -0.007 -0.139 -1.239 1.247 sum -30.562 -9.741 -0.020 32.077 Atomic orbital electron populations 1.21946 0.94973 1.01993 1.02498 1.22083 0.95767 0.88925 1.00970 1.61968 1.03713 1.10649 1.49985 1.22241 0.99005 0.93579 0.93222 1.21594 0.95812 0.95605 1.02491 1.21663 0.95003 0.99769 0.99050 1.21402 0.93292 0.95736 1.00976 0.89499 1.21124 0.92299 0.83006 1.01534 1.45049 1.07708 1.13085 1.74504 1.15954 0.82141 0.82943 0.79044 1.90937 1.55241 1.46692 1.52348 1.42286 1.07158 1.09143 1.73674 1.17040 0.81712 1.04431 1.00773 1.20326 0.94135 0.99454 0.97701 1.19967 0.92309 1.04933 1.02548 1.19407 0.85269 0.92675 0.93558 1.83973 1.14096 1.63484 1.46678 1.21331 0.93241 1.24325 1.07696 0.89057 1.25265 0.95926 0.96718 0.98603 1.70050 1.11698 1.31571 1.36635 0.85724 0.78690 0.79299 0.79810 1.19922 1.20305 1.19177 1.21112 0.95007 1.03503 1.04319 1.20884 0.93243 0.98198 0.96128 1.21987 0.87943 0.96267 1.00258 0.92125 0.91700 0.92356 0.94879 0.90511 0.95006 0.90054 0.91446 0.91015 0.91895 0.91565 0.91423 0.91661 0.77244 0.76925 0.86820 0.86099 0.92115 0.85267 0.85588 0.90258 0.94406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.72 9.16 37.15 0.34 -0.38 16 2 C 0.05 0.29 5.99 -3.83 -0.02 0.27 16 3 N -0.54 -3.58 4.80 -234.68 -1.13 -4.71 16 4 C 0.05 0.28 4.85 -3.83 -0.02 0.26 16 5 C -0.12 -0.64 6.09 -26.65 -0.16 -0.80 16 6 C -0.12 -0.71 5.13 -26.61 -0.14 -0.84 16 7 C -0.09 -0.63 2.39 -90.54 -0.22 -0.84 16 8 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 9 C 0.15 1.33 5.07 -4.04 -0.02 1.30 16 10 N -0.75 -7.39 5.31 -65.22 -0.35 -7.74 16 11 C 0.70 10.32 8.41 -86.92 -0.73 9.59 16 12 O -0.58 -11.16 13.78 5.28 0.07 -11.08 16 13 N -0.68 -9.44 5.35 -14.18 -0.08 -9.51 16 14 C 0.05 0.97 6.30 -83.62 -0.53 0.45 16 15 C -0.10 -1.70 9.96 -39.42 -0.39 -2.09 16 16 C -0.18 -3.76 9.99 -39.42 -0.39 -4.16 16 17 C 0.14 3.59 6.65 -39.09 -0.26 3.33 16 18 O -0.18 -5.19 9.76 -0.01 0.00 -5.19 16 19 C -0.39 -11.14 9.48 30.88 0.29 -10.85 16 20 H 0.09 2.44 5.20 -52.49 -0.27 2.17 16 21 C 0.04 1.08 5.49 -17.52 -0.10 0.99 16 22 N -0.86 -25.66 13.67 55.48 0.76 -24.90 16 23 Si 0.94 21.01 29.55 -169.99 -5.02 15.98 16 24 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 25 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 26 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 27 C -0.22 -5.09 9.16 -39.42 -0.36 -5.45 16 28 C -0.06 -1.34 8.69 -39.41 -0.34 -1.69 16 29 C 0.06 0.43 4.71 -3.84 -0.02 0.42 16 30 H 0.06 0.23 8.14 -51.93 -0.42 -0.19 16 31 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.06 0.26 6.21 -51.92 -0.32 -0.07 16 33 H 0.03 0.19 8.08 -51.93 -0.42 -0.22 16 34 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.03 0.20 8.14 -51.93 -0.42 -0.22 16 36 H 0.08 0.42 5.81 -51.93 -0.30 0.12 16 37 H 0.07 0.32 8.14 -51.93 -0.42 -0.11 16 38 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 39 H 0.06 0.43 8.14 -51.92 -0.42 0.01 16 40 H 0.07 0.37 7.27 -51.93 -0.38 -0.01 16 41 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 42 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 43 H 0.39 2.70 7.70 -40.82 -0.31 2.39 16 44 H 0.40 3.94 8.84 -40.82 -0.36 3.58 16 45 H 0.11 1.60 8.06 -52.48 -0.42 1.17 16 46 H 0.12 2.43 8.06 -52.49 -0.42 2.00 16 47 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 48 H 0.13 3.02 5.63 -52.49 -0.30 2.72 16 49 H 0.13 2.64 6.22 -52.49 -0.33 2.31 16 50 H 0.08 0.53 8.12 -51.93 -0.42 0.11 16 51 H 0.04 0.27 8.14 -51.93 -0.42 -0.15 16 LS Contribution 404.12 15.07 6.09 6.09 Total: -1.00 -34.23 404.12 -10.76 -44.99 By element: Atomic # 1 Polarization: 14.64 SS G_CDS: -8.04 Total: 6.59 kcal Atomic # 6 Polarization: -7.45 SS G_CDS: -3.07 Total: -10.52 kcal Atomic # 7 Polarization: -46.07 SS G_CDS: -0.79 Total: -46.86 kcal Atomic # 8 Polarization: -16.35 SS G_CDS: 0.07 Total: -16.28 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.98 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -34.23 -10.76 -44.99 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001647083420.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.631 kcal (2) G-P(sol) polarization free energy of solvation -34.226 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.594 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.987 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.355 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds