Wall clock time and date at job start Wed Apr 1 2020 06:10:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 N 1.46903 * 109.47392 * 2 1 4 4 C 1.46846 * 110.99858 * 314.21188 * 3 2 1 5 5 C 1.53036 * 109.51988 * 174.15504 * 4 3 2 6 6 C 1.53118 * 109.27824 * 59.17949 * 5 4 3 7 7 C 1.53116 * 109.15291 * 302.33831 * 6 5 4 8 8 H 1.09002 * 109.50838 * 297.71926 * 7 6 5 9 9 C 1.52997 * 109.49470 * 177.60701 * 7 6 5 10 10 N 1.46507 * 109.47383 * 65.20111 * 9 7 6 11 11 C 1.34771 * 119.99979 * 179.97438 * 10 9 7 12 12 O 1.21594 * 120.00104 * 0.02562 * 11 10 9 13 13 N 1.34783 * 119.99882 * 179.97438 * 11 10 9 14 14 C 1.40028 * 119.99930 * 175.49689 * 13 11 10 15 15 C 1.38906 * 119.99687 * 214.85414 * 14 13 11 16 16 C 1.38013 * 119.99653 * 179.79110 * 15 14 13 17 17 C 1.38903 * 120.00109 * 0.46157 * 16 15 14 18 18 O 1.35782 * 120.00074 * 179.77133 * 17 16 15 19 19 C 1.34816 * 117.00083 * 185.36584 * 18 17 16 20 20 H 1.07998 * 119.99865 * 354.95809 * 19 18 17 21 21 C 1.38625 * 119.99871 * 174.96407 * 19 18 17 22 22 N 1.31578 * 120.00246 * 359.97438 * 21 19 18 23 23 Si 1.86806 * 119.99896 * 179.97438 * 21 19 18 24 24 H 1.48499 * 109.46810 * 89.99618 * 23 21 19 25 25 H 1.48500 * 109.47193 * 209.99657 * 23 21 19 26 26 H 1.48501 * 109.46818 * 329.99973 * 23 21 19 27 27 C 1.38904 * 120.00151 * 359.78999 * 17 16 15 28 28 C 1.38013 * 120.00127 * 359.97438 * 27 17 16 29 29 C 1.46839 * 111.00316 * 189.99720 * 3 2 1 30 30 H 1.09004 * 109.47242 * 179.97438 * 1 2 3 31 31 H 1.08994 * 109.47185 * 299.99852 * 1 2 3 32 32 H 1.09008 * 109.47326 * 59.99861 * 1 2 3 33 33 H 1.09004 * 109.47653 * 240.00395 * 2 1 3 34 34 H 1.08998 * 109.47243 * 120.00043 * 2 1 3 35 35 H 1.08998 * 109.46384 * 294.17279 * 4 3 2 36 36 H 1.09001 * 109.46292 * 54.14329 * 4 3 2 37 37 H 1.09004 * 109.50150 * 179.11863 * 5 4 3 38 38 H 1.08996 * 109.50811 * 299.19401 * 5 4 3 39 39 H 1.09009 * 109.52248 * 62.25005 * 6 5 4 40 40 H 1.08998 * 109.52394 * 182.37245 * 6 5 4 41 41 H 1.09000 * 109.47508 * 185.19987 * 9 7 6 42 42 H 1.09001 * 109.47225 * 305.19684 * 9 7 6 43 43 H 0.96996 * 119.99855 * 359.97438 * 10 9 7 44 44 H 0.96996 * 119.99727 * 355.49457 * 13 11 10 45 45 H 1.08004 * 120.00627 * 0.02562 * 15 14 13 46 46 H 1.08001 * 120.00098 * 180.22910 * 16 15 14 47 47 H 0.97000 * 119.99585 * 180.02562 * 22 21 19 48 48 H 1.07997 * 120.00137 * 179.97438 * 27 17 16 49 49 H 1.07996 * 120.00365 * 179.97438 * 28 27 17 50 50 H 1.09003 * 109.46818 * 305.85854 * 29 3 2 51 51 H 1.09003 * 109.46629 * 65.83614 * 29 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.2938 2.1998 -0.9826 5 6 1.7264 3.6621 -0.8538 6 6 3.2354 3.7657 -1.0920 7 6 3.9653 2.8705 -0.0868 8 1 3.7641 3.2207 0.9256 9 6 5.4705 2.9218 -0.3563 10 7 5.9674 4.2751 -0.0955 11 6 7.2740 4.5578 -0.2665 12 8 8.0403 3.6897 -0.6377 13 7 7.7311 5.8029 -0.0271 14 6 9.1022 6.0740 -0.1132 15 6 9.6831 6.9965 0.7476 16 6 11.0353 7.2605 0.6656 17 6 11.8134 6.6109 -0.2840 18 8 13.1429 6.8740 -0.3678 19 6 13.8188 6.2953 -1.3805 20 1 13.3196 5.5920 -2.0306 21 6 15.1546 6.6028 -1.5874 22 7 15.7626 7.4600 -0.7957 23 14 16.0913 5.8003 -2.9903 24 1 15.9664 6.6365 -4.2111 25 1 17.5241 5.6746 -2.6208 26 1 15.5280 4.4519 -3.2542 27 6 11.2315 5.6922 -1.1483 28 6 9.8803 5.4245 -1.0631 29 6 3.4679 1.4311 -0.2380 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8899 32 1 -0.3634 0.5139 -0.8900 33 1 1.8934 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 1.5177 1.8419 -1.9876 36 1 0.2222 2.1206 -0.7995 37 1 1.1990 4.2641 -1.5938 38 1 1.4895 4.0250 0.1462 39 1 3.4674 3.4397 -2.1060 40 1 3.5549 4.7994 -0.9597 41 1 5.9810 2.2150 0.2978 42 1 5.6626 2.6583 -1.3963 43 1 5.3561 4.9677 0.2003 44 1 7.1103 6.5111 0.2048 45 1 9.0774 7.5044 1.4836 46 1 11.4877 7.9751 1.3373 47 1 16.6972 7.6754 -0.9408 48 1 11.8365 5.1874 -1.8869 49 1 9.4278 4.7106 -1.7353 50 1 3.9755 0.7936 0.4860 51 1 3.6818 1.0770 -1.2465 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001647083420.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:10:39 Heat of formation + Delta-G solvation = -51.434093 kcal Electronic energy + Delta-G solvation = -29398.434202 eV Core-core repulsion = 25297.357072 eV Total energy + Delta-G solvation = -4101.077130 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.64383 -40.59661 -40.14129 -38.33463 -36.72856 -35.39355 -34.56240 -34.09734 -32.33987 -31.82103 -30.78565 -29.41080 -27.37711 -26.77000 -25.29461 -23.95734 -23.60225 -23.10743 -21.78718 -21.60689 -20.69155 -20.03854 -19.39797 -18.87144 -18.12662 -17.10964 -16.75530 -16.53188 -16.29209 -16.13784 -15.97044 -15.52658 -15.51265 -15.31046 -15.22913 -15.15739 -14.85234 -14.58924 -14.23485 -14.11619 -13.90343 -13.65219 -13.50622 -13.20645 -13.17909 -13.11253 -12.68865 -12.58321 -12.50486 -12.43467 -12.12800 -12.08998 -12.01789 -11.57966 -11.47018 -11.31901 -11.24790 -11.18958 -10.92959 -10.53591 -10.08817 -9.80855 -9.27196 -8.55560 -8.45524 -6.12185 0.55243 0.61893 1.35280 1.43584 1.52271 1.62187 2.11881 2.18997 2.84931 2.88863 3.17298 3.29121 3.54504 3.72663 3.77358 3.89000 4.11852 4.15657 4.17224 4.19574 4.28028 4.37706 4.48172 4.50822 4.51617 4.59662 4.60947 4.65601 4.69336 4.75677 4.80077 4.88007 4.91669 5.04348 5.08504 5.10325 5.13072 5.15827 5.18468 5.24433 5.32939 5.36995 5.41765 5.45415 5.51937 5.64743 5.73179 6.01618 6.05124 6.12409 6.16416 6.22232 6.99223 7.07331 7.56265 7.79116 8.77175 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.025469 B = 0.001571 C = 0.001517 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1099.122415 B =17817.324458 C =18455.228532 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.047 3.953 3 N -0.544 5.544 4 C 0.045 3.955 5 C -0.113 4.113 6 C -0.116 4.116 7 C -0.080 4.080 8 H 0.093 0.907 9 C 0.147 3.853 10 N -0.721 5.721 11 C 0.696 3.304 12 O -0.623 6.623 13 N -0.661 5.661 14 C 0.082 3.918 15 C -0.078 4.078 16 C -0.178 4.178 17 C 0.104 3.896 18 O -0.229 6.229 19 C -0.414 4.414 20 H 0.096 0.904 21 C -0.020 4.020 22 N -0.918 5.918 23 Si 1.016 2.984 24 H -0.262 1.262 25 H -0.268 1.268 26 H -0.258 1.258 27 C -0.228 4.228 28 C -0.077 4.077 29 C 0.063 3.937 30 H 0.068 0.932 31 H 0.062 0.938 32 H 0.060 0.940 33 H 0.029 0.971 34 H 0.076 0.924 35 H 0.025 0.975 36 H 0.089 0.911 37 H 0.077 0.923 38 H 0.073 0.927 39 H 0.054 0.946 40 H 0.076 0.924 41 H 0.056 0.944 42 H 0.053 0.947 43 H 0.414 0.586 44 H 0.423 0.577 45 H 0.168 0.832 46 H 0.129 0.871 47 H 0.273 0.727 48 H 0.115 0.885 49 H 0.124 0.876 50 H 0.077 0.923 51 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -35.035 -9.114 1.273 36.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.080 4.080 3 N -0.269 5.269 4 C -0.082 4.082 5 C -0.151 4.151 6 C -0.154 4.154 7 C -0.099 4.099 8 H 0.111 0.889 9 C 0.023 3.977 10 N -0.378 5.378 11 C 0.396 3.604 12 O -0.503 6.503 13 N -0.311 5.311 14 C -0.013 4.013 15 C -0.098 4.098 16 C -0.198 4.198 17 C 0.054 3.946 18 O -0.135 6.135 19 C -0.490 4.490 20 H 0.113 0.887 21 C -0.217 4.217 22 N -0.556 5.556 23 Si 0.835 3.165 24 H -0.187 1.187 25 H -0.193 1.193 26 H -0.182 1.182 27 C -0.248 4.248 28 C -0.097 4.097 29 C -0.065 4.065 30 H 0.087 0.913 31 H 0.081 0.919 32 H 0.079 0.921 33 H 0.047 0.953 34 H 0.094 0.906 35 H 0.044 0.956 36 H 0.107 0.893 37 H 0.096 0.904 38 H 0.091 0.909 39 H 0.072 0.928 40 H 0.094 0.906 41 H 0.075 0.925 42 H 0.072 0.928 43 H 0.251 0.749 44 H 0.261 0.739 45 H 0.185 0.815 46 H 0.147 0.853 47 H 0.082 0.918 48 H 0.132 0.868 49 H 0.142 0.858 50 H 0.096 0.904 51 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -34.188 -9.519 1.585 35.524 hybrid contribution 0.659 -0.228 -1.244 1.426 sum -33.529 -9.747 0.341 34.919 Atomic orbital electron populations 1.21906 0.93991 1.02567 1.02462 1.22134 0.96600 0.88521 1.00779 1.62000 1.03452 1.11209 1.50241 1.22299 0.99436 0.93798 0.92705 1.21574 0.95278 0.95340 1.02903 1.21662 0.95476 0.99989 0.98236 1.21264 0.91258 0.95917 1.01492 0.88860 1.21156 0.93871 0.82133 1.00589 1.44829 1.06178 1.13995 1.72834 1.16150 0.83166 0.82470 0.78607 1.90927 1.56910 1.48141 1.54355 1.42061 1.05760 1.09983 1.73319 1.17148 0.83465 1.02150 0.98520 1.20749 0.92934 0.98462 0.97680 1.20313 0.93606 1.04405 1.01485 1.19935 0.84660 0.94429 0.95606 1.83933 1.16149 1.65525 1.47927 1.21760 0.94073 1.24931 1.08242 0.88653 1.26502 0.96517 0.97256 1.01458 1.70180 1.12278 1.33952 1.39188 0.84632 0.77155 0.78523 0.76184 1.18666 1.19303 1.18236 1.21088 0.96066 1.03545 1.04131 1.20938 0.92532 0.98936 0.97329 1.21967 0.88402 0.96316 0.99854 0.91318 0.91927 0.92096 0.95256 0.90552 0.95626 0.89250 0.90399 0.90854 0.92769 0.90551 0.92544 0.92823 0.74885 0.73869 0.81484 0.85274 0.91821 0.86751 0.85780 0.90407 0.95101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.16 9.16 71.98 0.66 -0.50 16 2 C 0.05 0.49 5.99 86.30 0.52 1.00 16 3 N -0.54 -6.36 4.80 -896.39 -4.31 -10.67 16 4 C 0.05 0.44 4.85 86.33 0.42 0.86 16 5 C -0.11 -0.93 6.09 30.65 0.19 -0.75 16 6 C -0.12 -1.10 5.13 30.67 0.16 -0.94 16 7 C -0.08 -0.89 2.39 -10.74 -0.03 -0.91 16 8 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 9 C 0.15 2.43 5.07 86.38 0.44 2.87 16 10 N -0.72 -12.11 5.31 -478.52 -2.54 -14.65 16 11 C 0.70 18.73 8.41 179.05 1.51 20.24 16 12 O -0.62 -23.52 13.78 -4.01 -0.06 -23.58 16 13 N -0.66 -15.96 5.35 -317.04 -1.69 -17.66 16 14 C 0.08 2.76 6.30 38.15 0.24 3.00 16 15 C -0.08 -2.51 9.96 22.38 0.22 -2.29 16 16 C -0.18 -7.43 9.99 22.38 0.22 -7.20 16 17 C 0.10 5.35 6.65 22.59 0.15 5.50 16 18 O -0.23 -14.05 9.76 -22.95 -0.22 -14.27 16 19 C -0.41 -24.94 9.48 67.91 0.64 -24.29 16 20 H 0.10 5.41 5.20 -2.91 -0.02 5.39 16 21 C -0.02 -1.15 5.49 84.82 0.47 -0.68 16 22 N -0.92 -56.96 13.67 21.61 0.30 -56.67 16 23 Si 1.02 44.32 29.55 68.60 2.03 46.35 16 24 H -0.26 -10.81 7.11 99.48 0.71 -10.10 16 25 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16 26 H -0.26 -10.73 7.11 99.48 0.71 -10.02 16 27 C -0.23 -10.97 9.16 22.38 0.20 -10.76 16 28 C -0.08 -3.19 8.69 22.38 0.19 -2.99 16 29 C 0.06 0.78 4.71 86.33 0.41 1.19 16 30 H 0.07 0.41 8.14 -2.39 -0.02 0.39 16 31 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 32 H 0.06 0.43 6.21 -2.38 -0.01 0.42 16 33 H 0.03 0.32 8.08 -2.39 -0.02 0.30 16 34 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 35 H 0.03 0.29 8.14 -2.39 -0.02 0.27 16 36 H 0.09 0.74 5.81 -2.39 -0.01 0.73 16 37 H 0.08 0.51 8.14 -2.39 -0.02 0.49 16 38 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 39 H 0.05 0.63 8.14 -2.38 -0.02 0.61 16 40 H 0.08 0.57 7.27 -2.39 -0.02 0.56 16 41 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 42 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 43 H 0.41 3.89 7.70 -92.71 -0.71 3.17 16 44 H 0.42 6.13 8.84 -92.71 -0.82 5.31 16 45 H 0.17 3.65 8.06 -2.91 -0.02 3.63 16 46 H 0.13 5.10 8.06 -2.91 -0.02 5.08 16 47 H 0.27 15.47 8.31 -92.71 -0.77 14.70 16 48 H 0.11 5.69 5.63 -2.91 -0.02 5.67 16 49 H 0.12 5.22 6.22 -2.91 -0.02 5.20 16 50 H 0.08 0.97 8.12 -2.39 -0.02 0.95 16 51 H 0.03 0.42 8.14 -2.39 -0.02 0.40 16 Total: -1.00 -79.71 404.12 -0.47 -80.18 By element: Atomic # 1 Polarization: 28.20 SS G_CDS: -0.58 Total: 27.62 kcal Atomic # 6 Polarization: -23.27 SS G_CDS: 6.61 Total: -16.66 kcal Atomic # 7 Polarization: -91.39 SS G_CDS: -8.25 Total: -99.64 kcal Atomic # 8 Polarization: -37.57 SS G_CDS: -0.28 Total: -37.85 kcal Atomic # 14 Polarization: 44.32 SS G_CDS: 2.03 Total: 46.35 kcal Total: -79.71 -0.47 -80.18 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001647083420.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.742 kcal (2) G-P(sol) polarization free energy of solvation -79.706 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.176 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.434 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds