Wall clock time and date at job start Wed Apr 1 2020 06:17:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46892 * 109.47204 * 2 1 4 4 C 1.46955 * 111.00370 * 189.99853 * 3 2 1 5 5 C 1.53043 * 109.36903 * 183.18801 * 4 3 2 6 6 N 1.46953 * 109.36768 * 301.60124 * 5 4 3 7 7 C 1.46892 * 111.00318 * 183.18751 * 6 5 4 8 8 C 1.53009 * 109.47087 * 160.57076 * 7 6 5 9 9 C 1.52993 * 109.47173 * 306.52653 * 8 7 6 10 10 C 1.52999 * 109.46817 * 186.52727 * 8 7 6 11 11 N 1.46504 * 109.47064 * 66.52796 * 8 7 6 12 12 S 1.65600 * 119.99993 * 196.31654 * 11 8 7 13 13 O 1.42098 * 104.27328 * 185.27548 * 12 11 8 14 14 O 1.42099 * 104.27475 * 313.13067 * 12 11 8 15 15 C 1.81402 * 104.44642 * 69.20307 * 12 11 8 16 16 C 1.53000 * 109.46614 * 170.97338 * 15 12 11 17 17 C 1.50702 * 109.46664 * 180.02562 * 16 15 12 18 18 H 1.08003 * 120.00450 * 359.97438 * 17 16 15 19 19 C 1.37883 * 119.99541 * 180.02562 * 17 16 15 20 20 N 1.31511 * 120.00379 * 359.97438 * 19 17 16 21 21 Si 1.86801 * 119.99576 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.47320 * 59.99830 * 21 19 17 23 23 H 1.48504 * 109.47035 * 179.97438 * 21 19 17 24 24 H 1.48503 * 109.47052 * 299.99306 * 21 19 17 25 25 C 1.46964 * 110.88019 * 59.31433 * 6 5 4 26 26 C 1.46953 * 111.00318 * 313.80048 * 3 2 1 27 27 H 1.09000 * 109.47078 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.47193 * 300.00029 * 1 2 3 29 29 H 1.08996 * 109.47137 * 59.99914 * 1 2 3 30 30 H 1.08999 * 109.47193 * 239.99971 * 2 1 3 31 31 H 1.09004 * 109.46858 * 119.99921 * 2 1 3 32 32 H 1.09006 * 109.48741 * 63.21716 * 4 3 2 33 33 H 1.09003 * 109.48943 * 303.15904 * 4 3 2 34 34 H 1.09003 * 109.49155 * 181.62898 * 5 4 3 35 35 H 1.09004 * 109.49115 * 61.57032 * 5 4 3 36 36 H 1.08997 * 109.47701 * 40.57296 * 7 6 5 37 37 H 1.08995 * 109.47240 * 280.56696 * 7 6 5 38 38 H 1.08998 * 109.47081 * 183.21153 * 9 8 7 39 39 H 1.09004 * 109.47276 * 303.21318 * 9 8 7 40 40 H 1.09006 * 109.47212 * 63.21435 * 9 8 7 41 41 H 1.09006 * 109.47539 * 299.99933 * 10 8 7 42 42 H 1.09000 * 109.47307 * 60.00323 * 10 8 7 43 43 H 1.09006 * 109.47019 * 180.02562 * 10 8 7 44 44 H 0.97007 * 119.99563 * 16.04437 * 11 8 7 45 45 H 1.08996 * 109.46900 * 290.96898 * 15 12 11 46 46 H 1.08996 * 109.47305 * 50.97730 * 15 12 11 47 47 H 1.08996 * 109.47128 * 299.99421 * 16 15 12 48 48 H 1.08996 * 109.46964 * 60.00184 * 16 15 12 49 49 H 0.96998 * 119.99883 * 180.02562 * 20 19 17 50 50 H 1.09005 * 109.48207 * 60.65295 * 25 6 5 51 51 H 1.08996 * 109.48755 * 180.71451 * 25 6 5 52 52 H 1.09004 * 109.48777 * 296.78365 * 26 3 2 53 53 H 1.09003 * 109.49016 * 56.83937 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 3.4690 1.4311 -0.2382 5 6 3.9517 2.8809 -0.1517 6 7 3.2320 3.6940 -1.1419 7 6 3.7216 5.0789 -1.1419 8 6 3.3304 5.7582 -2.4559 9 6 3.8143 4.9089 -3.6328 10 6 3.9771 7.1430 -2.5263 11 7 1.8733 5.8959 -2.5195 12 16 1.1342 6.2158 -3.9665 13 8 -0.2330 6.4036 -3.6276 14 8 1.9021 7.2724 -4.5261 15 6 1.3480 4.6938 -4.9301 16 6 0.5129 4.7787 -6.2093 17 6 0.6900 3.5140 -7.0095 18 1 1.3342 2.7285 -6.6427 19 6 0.0306 3.3603 -8.2106 20 7 -0.7533 4.3169 -8.6576 21 14 0.2507 1.7930 -9.2029 22 1 -0.1970 0.6293 -8.3962 23 1 -0.5599 1.8752 -10.4445 24 1 1.6835 1.6283 -9.5567 25 6 1.7825 3.6478 -0.9037 26 6 1.3000 2.1980 -0.9902 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 3.6875 1.0336 -1.2294 33 1 3.9807 0.8320 0.5151 34 1 5.0215 2.9209 -0.3566 35 1 3.7579 3.2697 0.8481 36 1 4.8070 5.0807 -1.0411 37 1 3.2783 5.6210 -0.3066 38 1 3.5862 5.4203 -4.5680 39 1 4.8911 4.7587 -3.5541 40 1 3.3104 3.9425 -3.6150 41 1 3.6324 7.7482 -1.6878 42 1 5.0613 7.0405 -2.4790 43 1 3.6981 7.6271 -3.4623 44 1 1.3411 5.7957 -1.7147 45 1 2.3996 4.5732 -5.1901 46 1 1.0197 3.8397 -4.3379 47 1 -0.5387 4.8994 -5.9493 48 1 0.8412 5.6328 -6.8015 49 1 -1.2175 4.2085 -9.5024 50 1 1.5641 4.0453 0.0875 51 1 1.2710 4.2470 -1.6569 52 1 1.4937 1.8092 -1.9899 53 1 0.2301 2.1580 -0.7852 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001655685745.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:17:01 Heat of formation + Delta-G solvation = -74.245446 kcal Electronic energy + Delta-G solvation = -31460.157108 eV Core-core repulsion = 27493.534755 eV Total energy + Delta-G solvation = -3966.622353 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.203 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.76849 -38.98280 -38.03554 -36.97562 -36.01347 -35.86261 -33.24054 -32.33147 -32.10771 -30.98946 -28.70026 -27.99572 -27.15722 -25.21560 -24.57619 -23.43561 -22.44220 -21.30058 -20.72858 -20.13617 -18.99140 -18.30558 -17.57657 -17.42319 -16.92833 -16.55165 -16.23993 -16.11061 -15.89827 -15.74365 -15.53145 -15.26334 -15.18686 -14.57851 -14.44887 -14.15233 -13.92104 -13.88278 -13.69863 -13.36997 -13.16642 -13.11643 -13.06086 -12.95186 -12.87438 -12.73509 -12.61322 -12.59227 -12.34574 -12.29444 -12.19725 -12.12218 -12.04649 -11.97810 -11.78593 -11.73056 -11.47651 -11.30839 -11.03458 -10.62278 -10.24504 -9.34296 -9.14496 -8.24547 -6.38082 -0.62584 1.40073 1.43415 1.51537 1.86087 2.38334 2.83631 2.89741 2.98850 3.08763 3.28329 3.69221 3.92610 3.94308 4.03176 4.04364 4.13505 4.21611 4.26197 4.27695 4.36325 4.38981 4.52423 4.53655 4.58116 4.61096 4.69072 4.74798 4.79112 4.85065 4.87959 4.93359 4.96290 5.01556 5.03457 5.06182 5.12996 5.17138 5.26689 5.29549 5.30364 5.30732 5.48303 5.55555 5.70014 6.02050 6.03090 6.07982 6.11171 6.21741 6.24428 6.75046 7.31713 8.87693 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.008294 B = 0.004254 C = 0.003220 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3375.182575 B = 6580.993815 C = 8693.771005 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.051 3.949 3 N -0.544 5.544 4 C 0.055 3.945 5 C 0.062 3.938 6 N -0.540 5.540 7 C 0.066 3.934 8 C 0.185 3.815 9 C -0.189 4.189 10 C -0.177 4.177 11 N -1.101 6.101 12 S 2.611 3.389 13 O -1.006 7.006 14 O -0.988 6.988 15 C -0.596 4.596 16 C 0.024 3.976 17 C -0.534 4.534 18 H 0.074 0.926 19 C -0.002 4.002 20 N -0.935 5.935 21 Si 0.971 3.029 22 H -0.264 1.264 23 H -0.284 1.284 24 H -0.263 1.263 25 C 0.039 3.961 26 C 0.048 3.952 27 H 0.070 0.930 28 H 0.063 0.937 29 H 0.049 0.951 30 H 0.027 0.973 31 H 0.085 0.915 32 H 0.031 0.969 33 H 0.091 0.909 34 H 0.098 0.902 35 H 0.042 0.958 36 H 0.113 0.887 37 H 0.053 0.947 38 H 0.044 0.956 39 H 0.101 0.899 40 H 0.083 0.917 41 H 0.065 0.935 42 H 0.090 0.910 43 H 0.061 0.939 44 H 0.421 0.579 45 H 0.152 0.848 46 H 0.137 0.863 47 H 0.004 0.996 48 H 0.002 0.998 49 H 0.267 0.733 50 H 0.046 0.954 51 H 0.087 0.913 52 H 0.028 0.972 53 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.606 -5.576 22.030 25.987 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.077 4.077 3 N -0.269 5.269 4 C -0.073 4.073 5 C -0.066 4.066 6 N -0.265 5.265 7 C -0.063 4.063 8 C 0.098 3.902 9 C -0.247 4.247 10 C -0.237 4.237 11 N -0.865 5.865 12 S 2.709 3.291 13 O -0.997 6.997 14 O -0.978 6.978 15 C -0.728 4.728 16 C -0.015 4.015 17 C -0.573 4.573 18 H 0.092 0.908 19 C -0.200 4.200 20 N -0.574 5.574 21 Si 0.794 3.206 22 H -0.189 1.189 23 H -0.209 1.209 24 H -0.187 1.187 25 C -0.090 4.090 26 C -0.080 4.080 27 H 0.089 0.911 28 H 0.082 0.918 29 H 0.068 0.932 30 H 0.045 0.955 31 H 0.104 0.896 32 H 0.049 0.951 33 H 0.110 0.890 34 H 0.116 0.884 35 H 0.060 0.940 36 H 0.131 0.869 37 H 0.071 0.929 38 H 0.063 0.937 39 H 0.120 0.880 40 H 0.102 0.898 41 H 0.084 0.916 42 H 0.109 0.891 43 H 0.080 0.920 44 H 0.260 0.740 45 H 0.170 0.830 46 H 0.155 0.845 47 H 0.022 0.978 48 H 0.021 0.979 49 H 0.076 0.924 50 H 0.064 0.936 51 H 0.105 0.895 52 H 0.046 0.954 53 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 12.174 -4.658 21.545 25.181 hybrid contribution -0.578 -1.098 -0.732 1.440 sum 11.596 -5.755 20.813 24.510 Atomic orbital electron populations 1.21917 0.94779 1.02512 1.02090 1.22111 0.96063 0.88635 1.00887 1.62332 1.04562 1.11147 1.48900 1.22214 0.87726 0.97204 1.00131 1.22190 0.98801 0.92094 0.93538 1.62061 1.03639 1.11007 1.49765 1.22333 1.02166 0.87480 0.94311 1.20315 0.77326 0.95303 0.97298 1.22781 1.05184 1.00880 0.95811 1.22516 1.02125 0.95541 1.03476 1.55900 1.15826 1.89763 1.25004 1.04685 0.72417 0.77323 0.74725 1.93490 1.36463 1.86657 1.83060 1.93478 1.71493 1.53261 1.79538 1.30919 1.11481 1.20016 1.10392 1.18791 0.93716 0.98178 0.90799 1.21440 1.28332 1.02437 1.05095 0.90796 1.26076 0.94552 1.00427 0.98963 1.70097 1.30472 1.35156 1.21708 0.85419 0.78748 0.78833 0.77587 1.18909 1.20944 1.18742 1.22629 0.89211 0.96492 1.00689 1.22279 0.99057 0.93256 0.93453 0.91149 0.91835 0.93188 0.95481 0.89625 0.95068 0.89038 0.88423 0.93964 0.86930 0.92902 0.93703 0.88023 0.89830 0.91626 0.89120 0.91969 0.73970 0.82988 0.84506 0.97805 0.97932 0.92443 0.93571 0.89531 0.95391 0.89666 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.51 9.18 71.98 0.66 -1.85 16 2 C 0.05 0.83 6.00 86.30 0.52 1.35 16 3 N -0.54 -9.90 4.86 -895.75 -4.35 -14.25 16 4 C 0.06 0.86 5.58 86.31 0.48 1.34 16 5 C 0.06 0.84 5.57 86.31 0.48 1.32 16 6 N -0.54 -9.04 3.66 -895.74 -3.28 -12.32 16 7 C 0.07 0.96 4.22 86.31 0.36 1.33 16 8 C 0.19 3.78 0.86 3.60 0.00 3.78 16 9 C -0.19 -4.20 6.32 71.98 0.46 -3.75 16 10 C -0.18 -3.61 8.53 71.98 0.61 -3.00 16 11 N -1.10 -27.66 3.79 -152.21 -0.58 -28.23 16 12 S 2.61 95.97 4.97 -56.49 -0.28 95.69 16 13 O -1.01 -44.03 18.08 -127.65 -2.31 -46.34 16 14 O -0.99 -40.58 14.83 -127.65 -1.89 -42.47 16 15 C -0.60 -23.27 4.55 71.98 0.33 -22.94 16 16 C 0.02 1.28 4.98 29.85 0.15 1.42 16 17 C -0.53 -29.83 9.11 25.60 0.23 -29.59 16 18 H 0.07 3.82 7.74 -2.91 -0.02 3.80 16 19 C 0.00 -0.11 5.46 84.66 0.46 0.36 16 20 N -0.93 -57.39 13.29 21.45 0.28 -57.11 16 21 Si 0.97 43.58 29.54 68.60 2.03 45.60 16 22 H -0.26 -11.29 7.11 99.48 0.71 -10.59 16 23 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 24 H -0.26 -11.19 7.11 99.48 0.71 -10.48 16 25 C 0.04 0.75 4.88 86.31 0.42 1.17 16 26 C 0.05 1.00 4.92 86.31 0.43 1.42 16 27 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 28 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 29 H 0.05 0.92 6.26 -2.39 -0.01 0.91 16 30 H 0.03 0.48 8.08 -2.39 -0.02 0.46 16 31 H 0.09 1.19 8.14 -2.38 -0.02 1.17 16 32 H 0.03 0.57 8.14 -2.38 -0.02 0.55 16 33 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 34 H 0.10 0.99 8.00 -2.39 -0.02 0.97 16 35 H 0.04 0.58 8.14 -2.38 -0.02 0.56 16 36 H 0.11 1.13 7.85 -2.39 -0.02 1.11 16 37 H 0.05 0.71 8.00 -2.39 -0.02 0.69 16 38 H 0.04 1.21 5.20 -2.39 -0.01 1.19 16 39 H 0.10 1.73 8.14 -2.38 -0.02 1.71 16 40 H 0.08 1.96 6.49 -2.38 -0.02 1.94 16 41 H 0.06 1.21 8.14 -2.38 -0.02 1.19 16 42 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 43 H 0.06 1.71 5.87 -2.38 -0.01 1.70 16 44 H 0.42 9.07 6.39 -96.73 -0.62 8.45 16 45 H 0.15 5.36 4.66 -2.39 -0.01 5.35 16 46 H 0.14 4.77 8.14 -2.39 -0.02 4.75 16 47 H 0.00 0.21 8.14 -2.39 -0.02 0.19 16 48 H 0.00 0.14 8.14 -2.39 -0.02 0.12 16 49 H 0.27 15.35 8.31 -92.71 -0.77 14.58 16 50 H 0.05 0.85 8.14 -2.38 -0.02 0.83 16 51 H 0.09 1.84 4.50 -2.39 -0.01 1.83 16 52 H 0.03 0.68 8.14 -2.38 -0.02 0.66 16 53 H 0.09 1.76 5.99 -2.39 -0.01 1.74 16 Total: -1.00 -74.64 401.81 -4.52 -79.16 By element: Atomic # 1 Polarization: 27.63 SS G_CDS: 0.27 Total: 27.90 kcal Atomic # 6 Polarization: -53.22 SS G_CDS: 5.59 Total: -47.62 kcal Atomic # 7 Polarization: -103.99 SS G_CDS: -7.93 Total: -111.91 kcal Atomic # 8 Polarization: -84.61 SS G_CDS: -4.20 Total: -88.81 kcal Atomic # 14 Polarization: 43.58 SS G_CDS: 2.03 Total: 45.60 kcal Atomic # 16 Polarization: 95.97 SS G_CDS: -0.28 Total: 95.69 kcal Total: -74.64 -4.52 -79.16 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001655685745.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.912 kcal (2) G-P(sol) polarization free energy of solvation -74.640 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.728 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.518 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.158 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds