Wall clock time and date at job start Wed Apr 1 2020 05:01:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08999 * 109.46803 * 2 1 4 4 N 1.46509 * 109.47020 * 240.00445 * 2 1 3 5 5 C 1.34777 * 119.99568 * 84.99473 * 4 2 1 6 6 O 1.21545 * 120.00571 * 0.02562 * 5 4 2 7 7 C 1.47849 * 119.99504 * 179.97438 * 5 4 2 8 8 C 1.39580 * 120.14500 * 359.72939 * 7 5 4 9 9 C 1.37957 * 119.84932 * 179.78882 * 8 7 5 10 10 C 1.38354 * 120.14702 * 0.48371 * 9 8 7 11 11 C 1.38362 * 120.29280 * 359.74565 * 10 9 8 12 12 C 1.37948 * 120.14563 * 0.02562 * 11 10 9 13 13 C 1.50693 * 109.47609 * 120.00738 * 2 1 3 14 14 O 1.21282 * 120.00845 * 119.99808 * 13 2 1 15 15 N 1.34781 * 119.99725 * 299.99628 * 13 2 1 16 16 C 1.46504 * 119.99771 * 0.02562 * 15 13 2 17 17 C 1.46502 * 120.00102 * 179.97438 * 15 13 2 18 18 C 1.53000 * 109.46803 * 90.00543 * 17 15 13 19 19 C 1.53002 * 109.47039 * 180.02562 * 18 17 15 20 20 N 1.46496 * 109.47188 * 179.97438 * 19 18 17 21 21 C 1.46497 * 119.99794 * 90.00070 * 20 19 18 22 22 C 1.36938 * 120.00278 * 269.99790 * 20 19 18 23 23 H 1.08000 * 119.99446 * 23.04825 * 22 20 19 24 24 C 1.38815 * 120.00041 * 203.04473 * 22 20 19 25 25 N 1.31617 * 119.99795 * 12.93098 * 24 22 20 26 26 Si 1.86796 * 119.99906 * 192.92642 * 24 22 20 27 27 H 1.48503 * 109.46985 * 90.00265 * 26 24 22 28 28 H 1.48500 * 109.47448 * 210.00307 * 26 24 22 29 29 H 1.48500 * 109.47443 * 330.00662 * 26 24 22 30 30 H 1.09004 * 109.47039 * 299.99099 * 1 2 3 31 31 H 1.08998 * 109.47649 * 59.99974 * 1 2 3 32 32 H 1.09002 * 109.47110 * 179.97438 * 1 2 3 33 33 H 0.96995 * 120.00132 * 265.00141 * 4 2 1 34 34 H 1.07993 * 120.07229 * 359.97438 * 8 7 5 35 35 H 1.08002 * 119.92680 * 180.22607 * 9 8 7 36 36 H 1.08005 * 119.85717 * 179.71927 * 10 9 8 37 37 H 1.08000 * 119.92357 * 179.97438 * 11 10 9 38 38 H 1.08003 * 120.07889 * 179.97438 * 12 11 10 39 39 H 1.09003 * 109.47268 * 90.00224 * 16 15 13 40 40 H 1.08998 * 109.47115 * 209.99747 * 16 15 13 41 41 H 1.08994 * 109.47256 * 329.99976 * 16 15 13 42 42 H 1.09006 * 109.47198 * 210.00016 * 17 15 13 43 43 H 1.09000 * 109.46955 * 330.00189 * 17 15 13 44 44 H 1.09006 * 109.46813 * 299.99708 * 18 17 15 45 45 H 1.09000 * 109.47655 * 60.00074 * 18 17 15 46 46 H 1.08994 * 109.46928 * 300.00202 * 19 18 17 47 47 H 1.09000 * 109.46940 * 59.99510 * 19 18 17 48 48 H 1.09000 * 109.47481 * 95.12289 * 21 20 19 49 49 H 1.09004 * 109.47585 * 215.12072 * 21 20 19 50 50 H 1.08997 * 109.47477 * 335.12382 * 21 20 19 51 51 H 0.97003 * 119.99291 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 7 2.0183 -0.6906 -1.1963 5 6 2.1469 -0.0181 -2.3572 6 8 1.8582 1.1614 -2.4116 7 6 2.6402 -0.7148 -3.5643 8 6 2.9790 -2.0675 -3.5036 9 6 3.4346 -2.7127 -4.6347 10 6 3.5654 -2.0195 -5.8249 11 6 3.2359 -0.6773 -5.8907 12 6 2.7747 -0.0214 -4.7682 13 6 2.0324 -0.7105 1.2303 14 8 2.7297 -1.6966 1.1190 15 7 1.7069 -0.2501 2.4545 16 6 0.8642 0.9407 2.5890 17 6 2.1948 -0.9411 3.6506 18 6 3.5428 -0.3492 4.0672 19 6 4.0527 -1.0713 5.3160 20 7 5.3436 -0.5049 5.7146 21 6 5.3917 0.6240 6.6470 22 6 6.5055 -1.0309 5.2158 23 1 6.4940 -1.5800 4.2859 24 6 7.6978 -0.8582 5.9054 25 7 7.6827 -0.4201 7.1464 26 14 9.3235 -1.2476 5.0720 27 1 9.8320 -0.0323 4.3866 28 1 10.3088 -1.6900 6.0911 29 1 9.1222 -2.3301 4.0755 30 1 -0.3633 0.5137 0.8901 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3633 -1.0277 -0.0005 33 1 2.2490 -1.6317 -1.1528 34 1 2.8819 -2.6085 -2.5740 35 1 3.6936 -3.7602 -4.5900 36 1 3.9268 -2.5281 -6.7064 37 1 3.3407 -0.1419 -6.8227 38 1 2.5181 1.0265 -4.8207 39 1 -0.1837 0.6424 2.6226 40 1 1.1219 1.4662 3.5085 41 1 1.0272 1.5994 1.7361 42 1 1.4768 -0.8156 4.4611 43 1 2.3155 -2.0024 3.4332 44 1 4.2608 -0.4747 3.2567 45 1 3.4221 0.7121 4.2846 46 1 3.3348 -0.9462 6.1266 47 1 4.1735 -2.1324 5.0982 48 1 5.5382 0.2520 7.6610 49 1 6.2182 1.2821 6.3786 50 1 4.4545 1.1782 6.5952 51 1 8.5159 -0.2998 7.6283 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001673486296.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:01:50 Heat of formation + Delta-G solvation = -13.344645 kcal Electronic energy + Delta-G solvation = -30125.235573 eV Core-core repulsion = 26025.810126 eV Total energy + Delta-G solvation = -4099.425447 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -40.88215 -39.90038 -38.47027 -36.43185 -35.47157 -35.26507 -32.76841 -31.93774 -31.29790 -30.60007 -29.65343 -27.20290 -26.09572 -25.65881 -24.79068 -23.48856 -22.81992 -21.95564 -20.65174 -20.19887 -19.69419 -18.51134 -17.11270 -16.77743 -16.64698 -16.21895 -15.91587 -15.60893 -15.17635 -15.06293 -14.82093 -14.58758 -14.19989 -14.07693 -13.98367 -13.81419 -13.50727 -13.32485 -13.02480 -12.96121 -12.73802 -12.64047 -12.55184 -12.04965 -11.99139 -11.89760 -11.63908 -11.45999 -11.27953 -10.94345 -10.78973 -10.70070 -10.41551 -10.26181 -10.14339 -9.90693 -9.82023 -9.71802 -9.50135 -9.36845 -9.26531 -8.75900 -8.46214 -6.67621 -5.66636 -3.13144 0.49917 0.99648 2.43974 2.51074 2.62011 3.11319 3.42826 3.48763 3.50980 3.54249 4.15092 4.35397 4.46609 4.55639 4.56858 4.72734 4.76717 4.80950 4.91362 5.00038 5.10011 5.12766 5.22788 5.31319 5.39611 5.42906 5.47956 5.49073 5.51115 5.60466 5.77001 5.81633 5.93376 5.99673 6.01741 6.02699 6.06674 6.09308 6.13490 6.46647 6.49700 6.57090 6.77038 6.84202 7.04820 7.20048 7.24766 7.41614 7.76604 7.87437 7.89093 8.00834 8.46462 9.30316 9.93768 10.42370 11.38226 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.010072 B = 0.002356 C = 0.002012 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2779.182833 B =11879.273094 C =13914.780828 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.126 3.874 3 H 0.115 0.885 4 N -0.707 5.707 5 C 0.564 3.436 6 O -0.538 6.538 7 C -0.135 4.135 8 C -0.083 4.083 9 C -0.127 4.127 10 C -0.094 4.094 11 C -0.130 4.130 12 C -0.059 4.059 13 C 0.509 3.491 14 O -0.531 6.531 15 N -0.607 5.607 16 C 0.070 3.930 17 C 0.116 3.884 18 C -0.152 4.152 19 C 0.156 3.844 20 N -0.603 5.603 21 C 0.164 3.836 22 C -0.251 4.251 23 H 0.067 0.933 24 C 0.000 4.000 25 N -0.910 5.910 26 Si 0.904 3.096 27 H -0.288 1.288 28 H -0.291 1.291 29 H -0.279 1.279 30 H 0.084 0.916 31 H 0.073 0.927 32 H 0.063 0.937 33 H 0.410 0.590 34 H 0.129 0.871 35 H 0.130 0.870 36 H 0.127 0.873 37 H 0.130 0.870 38 H 0.136 0.864 39 H 0.062 0.938 40 H 0.078 0.922 41 H 0.073 0.927 42 H 0.075 0.925 43 H 0.083 0.917 44 H 0.063 0.937 45 H 0.053 0.947 46 H 0.034 0.966 47 H 0.047 0.953 48 H 0.031 0.969 49 H 0.039 0.961 50 H -0.004 1.004 51 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.068 -0.296 -21.461 28.055 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.018 3.982 3 H 0.133 0.867 4 N -0.361 5.361 5 C 0.352 3.648 6 O -0.416 6.416 7 C -0.138 4.138 8 C -0.102 4.102 9 C -0.145 4.145 10 C -0.113 4.113 11 C -0.148 4.148 12 C -0.078 4.078 13 C 0.295 3.705 14 O -0.407 6.407 15 N -0.340 5.340 16 C -0.073 4.073 17 C -0.006 4.006 18 C -0.193 4.193 19 C 0.028 3.972 20 N -0.326 5.326 21 C 0.019 3.981 22 C -0.381 4.381 23 H 0.085 0.915 24 C -0.198 4.198 25 N -0.555 5.555 26 Si 0.734 3.266 27 H -0.216 1.216 28 H -0.218 1.218 29 H -0.204 1.204 30 H 0.102 0.898 31 H 0.092 0.908 32 H 0.082 0.918 33 H 0.248 0.752 34 H 0.147 0.853 35 H 0.148 0.852 36 H 0.145 0.855 37 H 0.148 0.852 38 H 0.154 0.846 39 H 0.081 0.919 40 H 0.096 0.904 41 H 0.092 0.908 42 H 0.093 0.907 43 H 0.101 0.899 44 H 0.082 0.918 45 H 0.072 0.928 46 H 0.053 0.947 47 H 0.066 0.934 48 H 0.049 0.951 49 H 0.057 0.943 50 H 0.014 0.986 51 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -17.753 0.045 -21.367 27.779 hybrid contribution 1.144 -0.486 -0.283 1.275 sum -16.609 -0.441 -21.650 27.290 Atomic orbital electron populations 1.22385 0.92779 1.03412 1.04291 1.20761 0.95760 0.98158 0.83562 0.86721 1.45663 1.67141 1.14952 1.08373 1.18261 0.77277 0.86362 0.82947 1.90763 1.50425 1.15376 1.85076 1.19895 1.05072 0.94566 0.94232 1.21415 0.96346 0.93401 0.99013 1.21153 1.00184 1.00515 0.92661 1.21415 0.97299 0.94533 0.98014 1.21177 1.00127 0.94904 0.98598 1.21296 0.95061 1.00441 0.91034 1.20481 0.80467 0.84851 0.84668 1.90721 1.37444 1.26455 1.86114 1.47832 1.50887 1.29211 1.06025 1.22052 0.94264 0.87263 1.03682 1.21652 0.96417 0.97630 0.84883 1.22625 0.94906 1.00322 1.01454 1.20616 0.87919 0.95964 0.92722 1.43882 1.00751 1.34978 1.52977 1.20769 0.95046 0.88452 0.93819 1.19209 0.85385 1.30985 1.02479 0.91477 1.25018 0.98400 1.01146 0.95266 1.70072 1.25541 1.51145 1.08781 0.86258 0.83814 0.78087 0.78461 1.21560 1.21755 1.20435 0.89764 0.90829 0.91796 0.75195 0.85324 0.85202 0.85506 0.85247 0.84581 0.91950 0.90363 0.90825 0.90652 0.89894 0.91807 0.92833 0.94720 0.93440 0.95119 0.94259 0.98572 0.93847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.42 9.12 37.16 0.34 -1.08 16 2 C 0.13 1.39 2.18 -69.08 -0.15 1.24 16 3 H 0.12 1.33 6.84 -51.93 -0.36 0.97 16 4 N -0.71 -8.05 4.90 -55.88 -0.27 -8.32 16 5 C 0.56 6.93 7.74 -12.33 -0.10 6.83 16 6 O -0.54 -7.94 16.01 5.33 0.09 -7.85 16 7 C -0.13 -1.42 5.87 -104.96 -0.62 -2.03 16 8 C -0.08 -0.74 9.54 -39.18 -0.37 -1.11 16 9 C -0.13 -0.95 10.03 -39.64 -0.40 -1.34 16 10 C -0.09 -0.65 10.04 -39.49 -0.40 -1.04 16 11 C -0.13 -0.97 10.03 -39.64 -0.40 -1.36 16 12 C -0.06 -0.56 9.60 -39.19 -0.38 -0.94 16 13 C 0.51 6.84 7.14 -10.99 -0.08 6.76 16 14 O -0.53 -8.99 15.42 5.56 0.09 -8.91 16 15 N -0.61 -7.29 2.87 -181.57 -0.52 -7.82 16 16 C 0.07 0.57 8.80 59.85 0.53 1.10 16 17 C 0.12 1.60 5.41 -4.04 -0.02 1.57 16 18 C -0.15 -2.70 5.86 -26.73 -0.16 -2.85 16 19 C 0.16 3.23 5.64 -4.04 -0.02 3.21 16 20 N -0.60 -15.68 2.92 -181.12 -0.53 -16.21 16 21 C 0.16 4.13 8.98 59.85 0.54 4.67 16 22 C -0.25 -7.19 9.65 -15.06 -0.15 -7.33 16 23 H 0.07 1.92 7.86 -52.49 -0.41 1.51 16 24 C 0.00 -0.01 5.10 -17.43 -0.09 -0.10 16 25 N -0.91 -27.31 10.71 55.49 0.59 -26.71 16 26 Si 0.90 22.72 29.57 -169.99 -5.03 17.70 16 27 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 28 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 29 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 30 H 0.08 0.55 4.53 -51.93 -0.24 0.31 16 31 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 32 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.41 4.39 5.82 -40.82 -0.24 4.15 16 34 H 0.13 0.99 6.41 -52.49 -0.34 0.66 16 35 H 0.13 0.70 8.06 -52.49 -0.42 0.28 16 36 H 0.13 0.56 8.06 -52.48 -0.42 0.14 16 37 H 0.13 0.66 8.06 -52.49 -0.42 0.23 16 38 H 0.14 1.27 7.65 -52.48 -0.40 0.87 16 39 H 0.06 0.37 6.95 -51.93 -0.36 0.01 16 40 H 0.08 0.61 8.07 -51.93 -0.42 0.20 16 41 H 0.07 0.53 6.01 -51.93 -0.31 0.22 16 42 H 0.08 0.85 8.07 -51.93 -0.42 0.43 16 43 H 0.08 1.24 7.42 -51.93 -0.39 0.86 16 44 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 45 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 46 H 0.03 0.65 8.07 -51.93 -0.42 0.23 16 47 H 0.05 1.01 8.04 -51.93 -0.42 0.59 16 48 H 0.03 0.83 7.34 -51.93 -0.38 0.45 16 49 H 0.04 1.06 7.34 -51.93 -0.38 0.68 16 50 H 0.00 -0.09 8.03 -51.93 -0.42 -0.51 16 51 H 0.25 7.29 8.31 -40.82 -0.34 6.95 16 LS Contribution 413.98 15.07 6.24 6.24 Total: -1.00 -35.71 413.98 -9.25 -44.96 By element: Atomic # 1 Polarization: 8.72 SS G_CDS: -7.99 Total: 0.74 kcal Atomic # 6 Polarization: 8.10 SS G_CDS: -1.92 Total: 6.19 kcal Atomic # 7 Polarization: -58.33 SS G_CDS: -0.73 Total: -59.06 kcal Atomic # 8 Polarization: -16.93 SS G_CDS: 0.17 Total: -16.76 kcal Atomic # 14 Polarization: 22.72 SS G_CDS: -5.03 Total: 17.70 kcal Total LS contribution 6.24 Total: 6.24 kcal Total: -35.71 -9.25 -44.96 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001673486296.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.613 kcal (2) G-P(sol) polarization free energy of solvation -35.708 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.095 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.249 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.958 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.345 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds