Wall clock time and date at job start Wed Apr 1 2020 05:01:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08999 * 109.46803 * 2 1 4 4 N 1.46509 * 109.47020 * 240.00445 * 2 1 3 5 5 C 1.34777 * 119.99568 * 84.99473 * 4 2 1 6 6 O 1.21545 * 120.00571 * 0.02562 * 5 4 2 7 7 C 1.47849 * 119.99504 * 179.97438 * 5 4 2 8 8 C 1.39580 * 120.14500 * 359.72939 * 7 5 4 9 9 C 1.37957 * 119.84932 * 179.78882 * 8 7 5 10 10 C 1.38354 * 120.14702 * 0.48371 * 9 8 7 11 11 C 1.38362 * 120.29280 * 359.74565 * 10 9 8 12 12 C 1.37948 * 120.14563 * 0.02562 * 11 10 9 13 13 C 1.50693 * 109.47609 * 120.00738 * 2 1 3 14 14 O 1.21282 * 120.00845 * 119.99808 * 13 2 1 15 15 N 1.34781 * 119.99725 * 299.99628 * 13 2 1 16 16 C 1.46504 * 119.99771 * 0.02562 * 15 13 2 17 17 C 1.46502 * 120.00102 * 179.97438 * 15 13 2 18 18 C 1.53000 * 109.46803 * 90.00543 * 17 15 13 19 19 C 1.53002 * 109.47039 * 180.02562 * 18 17 15 20 20 N 1.46496 * 109.47188 * 179.97438 * 19 18 17 21 21 C 1.46497 * 119.99794 * 90.00070 * 20 19 18 22 22 C 1.36938 * 120.00278 * 269.99790 * 20 19 18 23 23 H 1.08000 * 119.99446 * 23.04825 * 22 20 19 24 24 C 1.38815 * 120.00041 * 203.04473 * 22 20 19 25 25 N 1.31617 * 119.99795 * 12.93098 * 24 22 20 26 26 Si 1.86796 * 119.99906 * 192.92642 * 24 22 20 27 27 H 1.48503 * 109.46985 * 90.00265 * 26 24 22 28 28 H 1.48500 * 109.47448 * 210.00307 * 26 24 22 29 29 H 1.48500 * 109.47443 * 330.00662 * 26 24 22 30 30 H 1.09004 * 109.47039 * 299.99099 * 1 2 3 31 31 H 1.08998 * 109.47649 * 59.99974 * 1 2 3 32 32 H 1.09002 * 109.47110 * 179.97438 * 1 2 3 33 33 H 0.96995 * 120.00132 * 265.00141 * 4 2 1 34 34 H 1.07993 * 120.07229 * 359.97438 * 8 7 5 35 35 H 1.08002 * 119.92680 * 180.22607 * 9 8 7 36 36 H 1.08005 * 119.85717 * 179.71927 * 10 9 8 37 37 H 1.08000 * 119.92357 * 179.97438 * 11 10 9 38 38 H 1.08003 * 120.07889 * 179.97438 * 12 11 10 39 39 H 1.09003 * 109.47268 * 90.00224 * 16 15 13 40 40 H 1.08998 * 109.47115 * 209.99747 * 16 15 13 41 41 H 1.08994 * 109.47256 * 329.99976 * 16 15 13 42 42 H 1.09006 * 109.47198 * 210.00016 * 17 15 13 43 43 H 1.09000 * 109.46955 * 330.00189 * 17 15 13 44 44 H 1.09006 * 109.46813 * 299.99708 * 18 17 15 45 45 H 1.09000 * 109.47655 * 60.00074 * 18 17 15 46 46 H 1.08994 * 109.46928 * 300.00202 * 19 18 17 47 47 H 1.09000 * 109.46940 * 59.99510 * 19 18 17 48 48 H 1.09000 * 109.47481 * 95.12289 * 21 20 19 49 49 H 1.09004 * 109.47585 * 215.12072 * 21 20 19 50 50 H 1.08997 * 109.47477 * 335.12382 * 21 20 19 51 51 H 0.97003 * 119.99291 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 7 2.0183 -0.6906 -1.1963 5 6 2.1469 -0.0181 -2.3572 6 8 1.8582 1.1614 -2.4116 7 6 2.6402 -0.7148 -3.5643 8 6 2.9790 -2.0675 -3.5036 9 6 3.4346 -2.7127 -4.6347 10 6 3.5654 -2.0195 -5.8249 11 6 3.2359 -0.6773 -5.8907 12 6 2.7747 -0.0214 -4.7682 13 6 2.0324 -0.7105 1.2303 14 8 2.7297 -1.6966 1.1190 15 7 1.7069 -0.2501 2.4545 16 6 0.8642 0.9407 2.5890 17 6 2.1948 -0.9411 3.6506 18 6 3.5428 -0.3492 4.0672 19 6 4.0527 -1.0713 5.3160 20 7 5.3436 -0.5049 5.7146 21 6 5.3917 0.6240 6.6470 22 6 6.5055 -1.0309 5.2158 23 1 6.4940 -1.5800 4.2859 24 6 7.6978 -0.8582 5.9054 25 7 7.6827 -0.4201 7.1464 26 14 9.3235 -1.2476 5.0720 27 1 9.8320 -0.0323 4.3866 28 1 10.3088 -1.6900 6.0911 29 1 9.1222 -2.3301 4.0755 30 1 -0.3633 0.5137 0.8901 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3633 -1.0277 -0.0005 33 1 2.2490 -1.6317 -1.1528 34 1 2.8819 -2.6085 -2.5740 35 1 3.6936 -3.7602 -4.5900 36 1 3.9268 -2.5281 -6.7064 37 1 3.3407 -0.1419 -6.8227 38 1 2.5181 1.0265 -4.8207 39 1 -0.1837 0.6424 2.6226 40 1 1.1219 1.4662 3.5085 41 1 1.0272 1.5994 1.7361 42 1 1.4768 -0.8156 4.4611 43 1 2.3155 -2.0024 3.4332 44 1 4.2608 -0.4747 3.2567 45 1 3.4221 0.7121 4.2846 46 1 3.3348 -0.9462 6.1266 47 1 4.1735 -2.1324 5.0982 48 1 5.5382 0.2520 7.6610 49 1 6.2182 1.2821 6.3786 50 1 4.4545 1.1782 6.5952 51 1 8.5159 -0.2998 7.6283 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001673486296.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:01:49 Heat of formation + Delta-G solvation = -35.933188 kcal Electronic energy + Delta-G solvation = -30126.215085 eV Core-core repulsion = 26025.810126 eV Total energy + Delta-G solvation = -4100.404960 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.81959 -40.80097 -39.24045 -37.99314 -36.85857 -36.28989 -34.24329 -33.07475 -32.02012 -31.89266 -30.75220 -28.13019 -27.92902 -27.20630 -25.70615 -24.59129 -23.62677 -23.15917 -21.98078 -21.49687 -20.64574 -19.35752 -18.75530 -18.02007 -17.62152 -17.23187 -16.91471 -16.76330 -16.41363 -16.07370 -15.85782 -15.76034 -15.49131 -15.22894 -14.94867 -14.78952 -14.61927 -14.50018 -14.36699 -14.23781 -13.70650 -13.63658 -13.50636 -13.32799 -12.98403 -12.85246 -12.74211 -12.67330 -12.59857 -12.54501 -12.39376 -12.26316 -12.11011 -12.05689 -11.89578 -11.43151 -11.20856 -10.96216 -10.68363 -10.41957 -9.99001 -9.95037 -9.75077 -8.77447 -7.85832 -5.34844 -0.19714 0.38021 1.40275 1.41706 1.42614 1.51873 1.60041 1.78115 2.20676 2.47766 2.85891 3.24242 3.27110 3.58114 3.69139 3.85893 3.95128 3.98260 3.99401 4.06792 4.21172 4.23714 4.35420 4.43590 4.48807 4.52754 4.55971 4.58854 4.69674 4.73097 4.75704 4.82694 4.84799 4.88788 4.92967 5.02571 5.15527 5.16077 5.23804 5.26293 5.31362 5.41249 5.45987 5.47730 5.54725 5.60133 5.69671 5.91448 6.25889 6.30827 6.31241 6.94862 7.00501 7.13498 7.86783 8.28112 9.16501 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.010072 B = 0.002356 C = 0.002012 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2779.182833 B =11879.273094 C =13914.780828 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.128 3.872 3 H 0.109 0.891 4 N -0.706 5.706 5 C 0.561 3.439 6 O -0.571 6.571 7 C -0.159 4.159 8 C -0.092 4.092 9 C -0.131 4.131 10 C -0.089 4.089 11 C -0.130 4.130 12 C -0.075 4.075 13 C 0.504 3.496 14 O -0.574 6.574 15 N -0.604 5.604 16 C 0.060 3.940 17 C 0.125 3.875 18 C -0.132 4.132 19 C 0.153 3.847 20 N -0.623 5.623 21 C 0.177 3.823 22 C -0.261 4.261 23 H 0.059 0.941 24 C -0.053 4.053 25 N -0.937 5.937 26 Si 0.965 3.035 27 H -0.287 1.287 28 H -0.289 1.289 29 H -0.273 1.273 30 H 0.108 0.892 31 H 0.069 0.931 32 H 0.066 0.934 33 H 0.412 0.588 34 H 0.133 0.867 35 H 0.153 0.847 36 H 0.158 0.842 37 H 0.154 0.846 38 H 0.129 0.871 39 H 0.094 0.906 40 H 0.086 0.914 41 H 0.082 0.918 42 H 0.113 0.887 43 H 0.067 0.933 44 H 0.022 0.978 45 H 0.058 0.942 46 H 0.063 0.937 47 H 0.036 0.964 48 H 0.007 0.993 49 H 0.010 0.990 50 H 0.036 0.964 51 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.528 -0.589 -22.807 30.030 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.020 3.980 3 H 0.127 0.873 4 N -0.360 5.360 5 C 0.350 3.650 6 O -0.452 6.452 7 C -0.162 4.162 8 C -0.110 4.110 9 C -0.149 4.149 10 C -0.107 4.107 11 C -0.148 4.148 12 C -0.094 4.094 13 C 0.292 3.708 14 O -0.454 6.454 15 N -0.335 5.335 16 C -0.081 4.081 17 C 0.002 3.998 18 C -0.173 4.173 19 C 0.026 3.974 20 N -0.347 5.347 21 C 0.033 3.967 22 C -0.392 4.392 23 H 0.076 0.924 24 C -0.248 4.248 25 N -0.584 5.584 26 Si 0.793 3.207 27 H -0.214 1.214 28 H -0.215 1.215 29 H -0.198 1.198 30 H 0.126 0.874 31 H 0.088 0.912 32 H 0.085 0.915 33 H 0.251 0.749 34 H 0.151 0.849 35 H 0.170 0.830 36 H 0.176 0.824 37 H 0.172 0.828 38 H 0.147 0.853 39 H 0.112 0.888 40 H 0.105 0.895 41 H 0.100 0.900 42 H 0.131 0.869 43 H 0.086 0.914 44 H 0.041 0.959 45 H 0.077 0.923 46 H 0.081 0.919 47 H 0.054 0.946 48 H 0.025 0.975 49 H 0.028 0.972 50 H 0.054 0.946 51 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -19.269 -0.243 -22.715 29.788 hybrid contribution 1.556 -0.411 0.103 1.613 sum -17.713 -0.654 -22.613 28.731 Atomic orbital electron populations 1.22347 0.90305 1.03941 1.05256 1.20823 0.97557 0.97218 0.82379 0.87308 1.45720 1.66835 1.15051 1.08371 1.18607 0.76696 0.86070 0.83580 1.90726 1.52161 1.16658 1.85649 1.19912 1.06936 0.95458 0.93905 1.21554 0.96603 0.92863 1.00016 1.21496 0.99372 1.01666 0.92326 1.21826 0.95793 0.94268 0.98802 1.21491 0.99086 0.95440 0.98738 1.21406 0.95987 1.00400 0.91636 1.20912 0.79804 0.84409 0.85689 1.90697 1.39409 1.28478 1.86807 1.47888 1.50679 1.30013 1.04962 1.22388 0.95206 0.85904 1.04588 1.21463 0.95085 0.96593 0.86614 1.22311 0.96143 1.00430 0.98429 1.20806 0.86440 0.95439 0.94688 1.44164 1.01879 1.35509 1.53104 1.20532 0.95881 0.88049 0.92279 1.19407 0.86923 1.30626 1.02218 0.92355 1.25752 1.01438 1.01687 0.95938 1.70215 1.25992 1.52317 1.09839 0.85298 0.79920 0.77906 0.77556 1.21363 1.21470 1.19764 0.87391 0.91203 0.91455 0.74937 0.84932 0.82960 0.82431 0.82789 0.85331 0.88819 0.89510 0.89952 0.86905 0.91402 0.95948 0.92285 0.91893 0.94574 0.97499 0.97156 0.94566 0.94164 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.43 9.12 71.98 0.66 -1.77 16 2 C 0.13 2.81 2.18 44.24 0.10 2.90 16 3 H 0.11 2.52 6.84 -2.39 -0.02 2.51 16 4 N -0.71 -16.55 4.90 -448.98 -2.20 -18.75 16 5 C 0.56 14.37 7.74 86.79 0.67 15.04 16 6 O -0.57 -17.53 16.01 -3.86 -0.06 -17.59 16 7 C -0.16 -3.44 5.87 -20.09 -0.12 -3.56 16 8 C -0.09 -1.61 9.54 22.53 0.21 -1.39 16 9 C -0.13 -1.73 10.03 22.23 0.22 -1.51 16 10 C -0.09 -1.00 10.04 22.33 0.22 -0.78 16 11 C -0.13 -1.73 10.03 22.23 0.22 -1.50 16 12 C -0.08 -1.44 9.60 22.53 0.22 -1.23 16 13 C 0.50 13.40 7.14 87.65 0.63 14.03 16 14 O -0.57 -19.94 15.42 -3.03 -0.05 -19.98 16 15 N -0.60 -13.48 2.87 -846.74 -2.43 -15.91 16 16 C 0.06 0.78 8.80 127.77 1.12 1.91 16 17 C 0.13 3.22 5.41 86.38 0.47 3.68 16 18 C -0.13 -4.59 5.86 30.59 0.18 -4.41 16 19 C 0.15 6.22 5.64 86.38 0.49 6.70 16 20 N -0.62 -32.53 2.92 -726.95 -2.12 -34.65 16 21 C 0.18 8.94 8.98 127.77 1.15 10.09 16 22 C -0.26 -15.23 9.65 84.03 0.81 -14.42 16 23 H 0.06 3.43 7.86 -2.91 -0.02 3.40 16 24 C -0.05 -3.12 5.10 84.86 0.43 -2.69 16 25 N -0.94 -57.17 10.71 21.65 0.23 -56.93 16 26 Si 0.96 47.39 29.57 68.60 2.03 49.42 16 27 H -0.29 -13.90 7.11 99.48 0.71 -13.20 16 28 H -0.29 -13.95 7.11 99.48 0.71 -13.24 16 29 H -0.27 -12.97 7.11 99.48 0.71 -12.26 16 30 H 0.11 1.08 4.53 -2.39 -0.01 1.06 16 31 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 32 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 33 H 0.41 9.21 5.82 -92.71 -0.54 8.67 16 34 H 0.13 2.09 6.41 -2.91 -0.02 2.07 16 35 H 0.15 1.27 8.06 -2.91 -0.02 1.25 16 36 H 0.16 0.79 8.06 -2.91 -0.02 0.77 16 37 H 0.15 1.21 8.06 -2.91 -0.02 1.18 16 38 H 0.13 2.55 7.65 -2.91 -0.02 2.52 16 39 H 0.09 0.69 6.95 -2.39 -0.02 0.68 16 40 H 0.09 1.04 8.07 -2.39 -0.02 1.02 16 41 H 0.08 0.96 6.01 -2.39 -0.01 0.95 16 42 H 0.11 2.11 8.07 -2.38 -0.02 2.09 16 43 H 0.07 1.99 7.42 -2.39 -0.02 1.97 16 44 H 0.02 0.94 8.14 -2.38 -0.02 0.93 16 45 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 46 H 0.06 2.21 8.07 -2.39 -0.02 2.19 16 47 H 0.04 1.54 8.04 -2.39 -0.02 1.52 16 48 H 0.01 0.37 7.34 -2.39 -0.02 0.35 16 49 H 0.01 0.54 7.34 -2.38 -0.02 0.52 16 50 H 0.04 1.50 8.03 -2.39 -0.02 1.48 16 51 H 0.25 14.69 8.31 -92.71 -0.77 13.92 16 Total: -1.00 -80.38 413.98 3.47 -76.91 By element: Atomic # 1 Polarization: 16.01 SS G_CDS: 0.39 Total: 16.40 kcal Atomic # 6 Polarization: 13.42 SS G_CDS: 7.68 Total: 21.10 kcal Atomic # 7 Polarization: -119.72 SS G_CDS: -6.53 Total: -126.25 kcal Atomic # 8 Polarization: -37.47 SS G_CDS: -0.11 Total: -37.58 kcal Atomic # 14 Polarization: 47.39 SS G_CDS: 2.03 Total: 49.42 kcal Total: -80.38 3.47 -76.91 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001673486296.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.977 kcal (2) G-P(sol) polarization free energy of solvation -80.378 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.468 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.910 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds