Wall clock time and date at job start Wed Apr 1 2020 05:01:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09004 * 109.46457 * 2 1 4 4 N 1.46500 * 109.47290 * 120.00039 * 2 1 3 5 5 C 1.34778 * 119.99907 * 275.00608 * 4 2 1 6 6 O 1.21557 * 120.00109 * 359.97438 * 5 4 2 7 7 C 1.47847 * 119.99952 * 180.02562 * 5 4 2 8 8 C 1.39574 * 120.13949 * 359.71836 * 7 5 4 9 9 C 1.37959 * 119.84792 * 179.79061 * 8 7 5 10 10 C 1.38361 * 120.14540 * 0.49137 * 9 8 7 11 11 C 1.38354 * 120.29046 * 359.73774 * 10 9 8 12 12 C 1.37959 * 120.14704 * 0.02708 * 11 10 9 13 13 C 1.50695 * 109.47251 * 240.00391 * 2 1 3 14 14 O 1.21278 * 119.99879 * 254.27782 * 13 2 1 15 15 N 1.34784 * 120.00176 * 74.28249 * 13 2 1 16 16 C 1.46499 * 119.99708 * 3.60492 * 15 13 2 17 17 C 1.46499 * 119.99747 * 183.60828 * 15 13 2 18 18 C 1.52999 * 109.47170 * 90.00171 * 17 15 13 19 19 C 1.53002 * 109.47039 * 180.02562 * 18 17 15 20 20 N 1.46505 * 109.46951 * 179.97438 * 19 18 17 21 21 C 1.46505 * 119.99749 * 89.99832 * 20 19 18 22 22 C 1.36929 * 120.00103 * 269.99503 * 20 19 18 23 23 H 1.08005 * 119.99704 * 22.48499 * 22 20 19 24 24 C 1.38814 * 120.00306 * 202.48223 * 22 20 19 25 25 N 1.31613 * 119.99897 * 10.37864 * 24 22 20 26 26 Si 1.86798 * 119.99988 * 190.37815 * 24 22 20 27 27 H 1.48490 * 109.47317 * 60.00145 * 26 24 22 28 28 H 1.48500 * 109.46963 * 180.02562 * 26 24 22 29 29 H 1.48503 * 109.47220 * 299.99603 * 26 24 22 30 30 H 1.09002 * 109.46950 * 177.10750 * 1 2 3 31 31 H 1.08995 * 109.47531 * 297.10799 * 1 2 3 32 32 H 1.09000 * 109.47687 * 57.11023 * 1 2 3 33 33 H 0.96992 * 119.99622 * 95.00546 * 4 2 1 34 34 H 1.07999 * 120.07774 * 0.02562 * 8 7 5 35 35 H 1.08000 * 119.92708 * 180.22963 * 9 8 7 36 36 H 1.08003 * 119.85412 * 179.72456 * 10 9 8 37 37 H 1.08007 * 119.92430 * 179.97438 * 11 10 9 38 38 H 1.08002 * 120.07109 * 179.97438 * 12 11 10 39 39 H 1.08996 * 109.47287 * 85.48227 * 16 15 13 40 40 H 1.09001 * 109.46817 * 205.47717 * 16 15 13 41 41 H 1.09000 * 109.47261 * 325.47093 * 16 15 13 42 42 H 1.09005 * 109.47004 * 209.99442 * 17 15 13 43 43 H 1.08993 * 109.47350 * 329.99467 * 17 15 13 44 44 H 1.08997 * 109.46877 * 299.99426 * 18 17 15 45 45 H 1.08993 * 109.47558 * 59.99424 * 18 17 15 46 46 H 1.09005 * 109.47059 * 299.99225 * 19 18 17 47 47 H 1.08993 * 109.47426 * 59.99330 * 19 18 17 48 48 H 1.09004 * 109.47158 * 93.56184 * 21 20 19 49 49 H 1.09001 * 109.46851 * 213.55878 * 21 20 19 50 50 H 1.08994 * 109.47619 * 333.55568 * 21 20 19 51 51 H 0.97003 * 120.00543 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 2.1470 -0.0183 2.3572 6 8 1.8582 1.1613 2.4117 7 6 2.6404 -0.7151 3.5642 8 6 2.9682 -2.0705 3.5061 9 6 3.4322 -2.7137 4.6349 10 6 3.5631 -2.0206 5.8252 11 6 3.2353 -0.6780 5.8907 12 6 2.7748 -0.0218 4.7680 13 6 2.0323 -0.7103 -1.2305 14 8 2.5028 -1.8243 -1.1380 15 7 1.9589 -0.1076 -2.4338 16 6 1.4641 1.2676 -2.5351 17 6 2.3738 -0.8277 -3.6402 18 6 1.1738 -1.5742 -4.2266 19 6 1.6073 -2.3268 -5.4862 20 7 0.4585 -3.0421 -6.0473 21 6 -0.4034 -2.3849 -7.0330 22 6 0.1903 -4.3249 -5.6504 23 1 0.5627 -4.6861 -4.7032 24 6 -0.5603 -5.1611 -6.4655 25 7 -0.8408 -4.7990 -7.6994 26 14 -1.1723 -6.8002 -5.8112 27 1 -2.0466 -6.5678 -4.6337 28 1 -1.9432 -7.4993 -6.8705 29 1 -0.0130 -7.6368 -5.4096 30 1 -0.3633 -1.0264 -0.0519 31 1 -0.3634 0.4682 0.9147 32 1 -0.3634 0.5580 -0.8629 33 1 2.2491 -1.6317 1.1525 34 1 2.8626 -2.6137 2.5786 35 1 3.6898 -3.7616 4.5905 36 1 3.9225 -2.5299 6.7072 37 1 3.3393 -0.1428 6.8230 38 1 2.5188 1.0262 4.8205 39 1 2.2854 1.9630 -2.3619 40 1 1.0519 1.4330 -3.5306 41 1 0.6867 1.4301 -1.7885 42 1 2.7539 -0.1175 -4.3746 43 1 3.1570 -1.5417 -3.3859 44 1 0.7937 -2.2844 -3.4923 45 1 0.3906 -0.8602 -4.4809 46 1 1.9878 -1.6169 -6.2207 47 1 2.3904 -3.0408 -5.2315 48 1 -0.0607 -2.6325 -8.0377 49 1 -1.4299 -2.7282 -6.9044 50 1 -0.3609 -1.3052 -6.8904 51 1 -1.3656 -5.3830 -8.2690 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001673486297.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:01:54 Heat of formation + Delta-G solvation = -15.804400 kcal Electronic energy + Delta-G solvation = -30074.409157 eV Core-core repulsion = 25974.877047 eV Total energy + Delta-G solvation = -4099.532110 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -40.88130 -39.89928 -38.49677 -36.44625 -35.40914 -35.27065 -32.71566 -31.99129 -31.32739 -30.56052 -29.76478 -27.10029 -26.11115 -25.68590 -24.81051 -23.48222 -22.84347 -21.97509 -20.65010 -20.22891 -19.61429 -18.51325 -17.17312 -16.79621 -16.64492 -16.22361 -15.76472 -15.68025 -15.31290 -15.02924 -14.84496 -14.66715 -14.20254 -14.12068 -13.92453 -13.78853 -13.44204 -13.31837 -12.97966 -12.91725 -12.80516 -12.66233 -12.51496 -12.07169 -12.06813 -11.87675 -11.66628 -11.48935 -11.25724 -10.94424 -10.79302 -10.71739 -10.41688 -10.28985 -10.16695 -9.92594 -9.83320 -9.73694 -9.51872 -9.39902 -9.28800 -8.74851 -8.46768 -6.69213 -5.67775 -3.13656 0.46688 0.96473 2.41054 2.52896 2.57173 3.12583 3.42051 3.46427 3.48287 3.51179 4.16155 4.33586 4.44219 4.54052 4.54099 4.72118 4.78819 4.83184 4.91053 4.97168 5.07778 5.15574 5.26128 5.33863 5.38699 5.43651 5.49352 5.50636 5.53789 5.57729 5.77862 5.90533 5.92946 5.97545 5.99633 6.02508 6.03791 6.08825 6.13681 6.45984 6.46644 6.57067 6.77904 6.82992 7.03292 7.18855 7.24903 7.44241 7.76062 7.85842 7.86532 8.00172 8.45339 9.29688 9.92806 10.41281 11.37574 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.013015 B = 0.002120 C = 0.001904 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2150.858964 B =13206.246570 C =14699.897381 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.127 3.873 3 H 0.112 0.888 4 N -0.708 5.708 5 C 0.563 3.437 6 O -0.539 6.539 7 C -0.135 4.135 8 C -0.083 4.083 9 C -0.127 4.127 10 C -0.094 4.094 11 C -0.130 4.130 12 C -0.060 4.060 13 C 0.510 3.490 14 O -0.533 6.533 15 N -0.607 5.607 16 C 0.066 3.934 17 C 0.115 3.885 18 C -0.150 4.150 19 C 0.155 3.845 20 N -0.604 5.604 21 C 0.166 3.834 22 C -0.250 4.250 23 H 0.067 0.933 24 C -0.001 4.001 25 N -0.912 5.912 26 Si 0.905 3.095 27 H -0.285 1.285 28 H -0.291 1.291 29 H -0.283 1.283 30 H 0.068 0.932 31 H 0.074 0.926 32 H 0.078 0.922 33 H 0.411 0.589 34 H 0.130 0.870 35 H 0.130 0.870 36 H 0.127 0.873 37 H 0.129 0.871 38 H 0.136 0.864 39 H 0.058 0.942 40 H 0.080 0.920 41 H 0.075 0.925 42 H 0.075 0.925 43 H 0.083 0.917 44 H 0.063 0.937 45 H 0.053 0.947 46 H 0.035 0.965 47 H 0.047 0.953 48 H 0.026 0.974 49 H 0.045 0.955 50 H -0.007 1.007 51 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.732 13.036 23.246 27.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.018 3.982 3 H 0.129 0.871 4 N -0.363 5.363 5 C 0.351 3.649 6 O -0.417 6.417 7 C -0.138 4.138 8 C -0.102 4.102 9 C -0.145 4.145 10 C -0.113 4.113 11 C -0.148 4.148 12 C -0.079 4.079 13 C 0.297 3.703 14 O -0.409 6.409 15 N -0.339 5.339 16 C -0.077 4.077 17 C -0.007 4.007 18 C -0.192 4.192 19 C 0.027 3.973 20 N -0.327 5.327 21 C 0.021 3.979 22 C -0.380 4.380 23 H 0.085 0.915 24 C -0.199 4.199 25 N -0.558 5.558 26 Si 0.735 3.265 27 H -0.212 1.212 28 H -0.216 1.216 29 H -0.209 1.209 30 H 0.087 0.913 31 H 0.093 0.907 32 H 0.097 0.903 33 H 0.250 0.750 34 H 0.147 0.853 35 H 0.148 0.852 36 H 0.145 0.855 37 H 0.147 0.853 38 H 0.154 0.846 39 H 0.077 0.923 40 H 0.099 0.901 41 H 0.094 0.906 42 H 0.093 0.907 43 H 0.101 0.899 44 H 0.081 0.919 45 H 0.072 0.928 46 H 0.053 0.947 47 H 0.065 0.935 48 H 0.045 0.955 49 H 0.063 0.937 50 H 0.012 0.988 51 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 7.670 13.183 23.115 27.693 hybrid contribution -0.384 -1.335 0.154 1.397 sum 7.286 11.849 23.269 27.110 Atomic orbital electron populations 1.22202 0.92391 1.03781 1.03707 1.20790 0.96050 0.97859 0.83487 0.87072 1.45717 1.67025 1.15077 1.08455 1.18271 0.77323 0.86384 0.82923 1.90763 1.50494 1.15427 1.85045 1.19894 1.05110 0.94535 0.94264 1.21436 0.96275 0.93360 0.99141 1.21165 1.00107 1.00532 0.92678 1.21418 0.97347 0.94516 0.97978 1.21178 1.00168 0.94911 0.98572 1.21290 0.95070 1.00483 0.91012 1.20466 0.78786 0.86440 0.84637 1.90706 1.45159 1.19348 1.85693 1.47840 1.64370 1.14833 1.06899 1.22049 0.99613 0.81973 1.04099 1.21666 0.98613 0.96009 0.84428 1.22618 0.96739 0.99374 1.00460 1.20618 0.90419 0.94284 0.91955 1.43883 1.27760 1.12370 1.48643 1.20768 0.95055 0.89703 0.92339 1.19166 1.30430 0.87982 1.00421 0.91521 1.25027 1.01755 0.97958 0.95148 1.70056 1.42548 1.37327 1.05847 0.86319 0.78673 0.83767 0.77700 1.21153 1.21647 1.20931 0.91313 0.90680 0.90289 0.75047 0.85258 0.85172 0.85504 0.85258 0.84593 0.92320 0.90110 0.90624 0.90677 0.89853 0.91853 0.92801 0.94707 0.93459 0.95534 0.93669 0.98821 0.93783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.64 9.21 37.16 0.34 -1.30 16 2 C 0.13 1.41 2.15 -69.09 -0.15 1.26 16 3 H 0.11 1.18 6.89 -51.93 -0.36 0.82 16 4 N -0.71 -7.94 4.97 -55.88 -0.28 -8.22 16 5 C 0.56 6.63 7.74 -12.33 -0.10 6.53 16 6 O -0.54 -7.59 16.01 5.32 0.09 -7.51 16 7 C -0.14 -1.35 5.87 -104.97 -0.62 -1.97 16 8 C -0.08 -0.71 9.54 -39.19 -0.37 -1.08 16 9 C -0.13 -0.90 10.03 -39.64 -0.40 -1.30 16 10 C -0.09 -0.60 10.04 -39.49 -0.40 -1.00 16 11 C -0.13 -0.90 10.03 -39.64 -0.40 -1.30 16 12 C -0.06 -0.53 9.60 -39.19 -0.38 -0.91 16 13 C 0.51 6.89 6.97 -10.98 -0.08 6.82 16 14 O -0.53 -8.95 15.42 5.56 0.09 -8.86 16 15 N -0.61 -7.42 2.87 -181.58 -0.52 -7.94 16 16 C 0.07 0.56 9.86 59.85 0.59 1.15 16 17 C 0.12 1.59 5.41 -4.04 -0.02 1.57 16 18 C -0.15 -2.62 5.86 -26.73 -0.16 -2.78 16 19 C 0.16 3.19 5.65 -4.04 -0.02 3.17 16 20 N -0.60 -15.51 2.93 -181.11 -0.53 -16.04 16 21 C 0.17 4.15 8.96 59.85 0.54 4.69 16 22 C -0.25 -7.07 9.67 -15.06 -0.15 -7.22 16 23 H 0.07 1.87 7.85 -52.48 -0.41 1.46 16 24 C 0.00 -0.04 5.14 -17.43 -0.09 -0.13 16 25 N -0.91 -27.10 10.55 55.49 0.59 -26.52 16 26 Si 0.91 22.43 29.57 -169.99 -5.03 17.40 16 27 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 28 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 29 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 30 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 32 H 0.08 0.69 5.86 -51.93 -0.30 0.38 16 33 H 0.41 4.45 5.75 -40.82 -0.23 4.21 16 34 H 0.13 0.98 6.41 -52.49 -0.34 0.64 16 35 H 0.13 0.67 8.06 -52.49 -0.42 0.25 16 36 H 0.13 0.51 8.06 -52.48 -0.42 0.08 16 37 H 0.13 0.59 8.06 -52.48 -0.42 0.16 16 38 H 0.14 1.18 7.65 -52.49 -0.40 0.78 16 39 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 40 H 0.08 0.64 8.04 -51.93 -0.42 0.22 16 41 H 0.08 0.55 4.57 -51.93 -0.24 0.32 16 42 H 0.07 0.87 8.07 -51.93 -0.42 0.45 16 43 H 0.08 1.27 7.37 -51.93 -0.38 0.89 16 44 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 45 H 0.05 0.93 8.14 -51.93 -0.42 0.50 16 46 H 0.03 0.65 8.07 -51.93 -0.42 0.23 16 47 H 0.05 0.99 8.04 -51.93 -0.42 0.58 16 48 H 0.03 0.71 7.46 -51.93 -0.39 0.32 16 49 H 0.04 1.22 7.12 -51.93 -0.37 0.85 16 50 H -0.01 -0.15 8.04 -51.93 -0.42 -0.56 16 51 H 0.25 7.26 8.31 -40.82 -0.34 6.92 16 LS Contribution 415.77 15.07 6.27 6.27 Total: -1.00 -34.86 415.77 -9.21 -44.07 By element: Atomic # 1 Polarization: 9.16 SS G_CDS: -8.03 Total: 1.13 kcal Atomic # 6 Polarization: 8.06 SS G_CDS: -1.85 Total: 6.21 kcal Atomic # 7 Polarization: -57.97 SS G_CDS: -0.74 Total: -58.71 kcal Atomic # 8 Polarization: -16.54 SS G_CDS: 0.17 Total: -16.37 kcal Atomic # 14 Polarization: 22.43 SS G_CDS: -5.03 Total: 17.40 kcal Total LS contribution 6.27 Total: 6.27 kcal Total: -34.86 -9.21 -44.07 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001673486297.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.269 kcal (2) G-P(sol) polarization free energy of solvation -34.860 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.073 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.804 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds