Wall clock time and date at job start Wed Apr 1 2020 05:01:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09004 * 109.46457 * 2 1 4 4 N 1.46500 * 109.47290 * 120.00039 * 2 1 3 5 5 C 1.34778 * 119.99907 * 275.00608 * 4 2 1 6 6 O 1.21557 * 120.00109 * 359.97438 * 5 4 2 7 7 C 1.47847 * 119.99952 * 180.02562 * 5 4 2 8 8 C 1.39574 * 120.13949 * 359.71836 * 7 5 4 9 9 C 1.37959 * 119.84792 * 179.79061 * 8 7 5 10 10 C 1.38361 * 120.14540 * 0.49137 * 9 8 7 11 11 C 1.38354 * 120.29046 * 359.73774 * 10 9 8 12 12 C 1.37959 * 120.14704 * 0.02708 * 11 10 9 13 13 C 1.50695 * 109.47251 * 240.00391 * 2 1 3 14 14 O 1.21278 * 119.99879 * 254.27782 * 13 2 1 15 15 N 1.34784 * 120.00176 * 74.28249 * 13 2 1 16 16 C 1.46499 * 119.99708 * 3.60492 * 15 13 2 17 17 C 1.46499 * 119.99747 * 183.60828 * 15 13 2 18 18 C 1.52999 * 109.47170 * 90.00171 * 17 15 13 19 19 C 1.53002 * 109.47039 * 180.02562 * 18 17 15 20 20 N 1.46505 * 109.46951 * 179.97438 * 19 18 17 21 21 C 1.46505 * 119.99749 * 89.99832 * 20 19 18 22 22 C 1.36929 * 120.00103 * 269.99503 * 20 19 18 23 23 H 1.08005 * 119.99704 * 22.48499 * 22 20 19 24 24 C 1.38814 * 120.00306 * 202.48223 * 22 20 19 25 25 N 1.31613 * 119.99897 * 10.37864 * 24 22 20 26 26 Si 1.86798 * 119.99988 * 190.37815 * 24 22 20 27 27 H 1.48490 * 109.47317 * 60.00145 * 26 24 22 28 28 H 1.48500 * 109.46963 * 180.02562 * 26 24 22 29 29 H 1.48503 * 109.47220 * 299.99603 * 26 24 22 30 30 H 1.09002 * 109.46950 * 177.10750 * 1 2 3 31 31 H 1.08995 * 109.47531 * 297.10799 * 1 2 3 32 32 H 1.09000 * 109.47687 * 57.11023 * 1 2 3 33 33 H 0.96992 * 119.99622 * 95.00546 * 4 2 1 34 34 H 1.07999 * 120.07774 * 0.02562 * 8 7 5 35 35 H 1.08000 * 119.92708 * 180.22963 * 9 8 7 36 36 H 1.08003 * 119.85412 * 179.72456 * 10 9 8 37 37 H 1.08007 * 119.92430 * 179.97438 * 11 10 9 38 38 H 1.08002 * 120.07109 * 179.97438 * 12 11 10 39 39 H 1.08996 * 109.47287 * 85.48227 * 16 15 13 40 40 H 1.09001 * 109.46817 * 205.47717 * 16 15 13 41 41 H 1.09000 * 109.47261 * 325.47093 * 16 15 13 42 42 H 1.09005 * 109.47004 * 209.99442 * 17 15 13 43 43 H 1.08993 * 109.47350 * 329.99467 * 17 15 13 44 44 H 1.08997 * 109.46877 * 299.99426 * 18 17 15 45 45 H 1.08993 * 109.47558 * 59.99424 * 18 17 15 46 46 H 1.09005 * 109.47059 * 299.99225 * 19 18 17 47 47 H 1.08993 * 109.47426 * 59.99330 * 19 18 17 48 48 H 1.09004 * 109.47158 * 93.56184 * 21 20 19 49 49 H 1.09001 * 109.46851 * 213.55878 * 21 20 19 50 50 H 1.08994 * 109.47619 * 333.55568 * 21 20 19 51 51 H 0.97003 * 120.00543 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 2.1470 -0.0183 2.3572 6 8 1.8582 1.1613 2.4117 7 6 2.6404 -0.7151 3.5642 8 6 2.9682 -2.0705 3.5061 9 6 3.4322 -2.7137 4.6349 10 6 3.5631 -2.0206 5.8252 11 6 3.2353 -0.6780 5.8907 12 6 2.7748 -0.0218 4.7680 13 6 2.0323 -0.7103 -1.2305 14 8 2.5028 -1.8243 -1.1380 15 7 1.9589 -0.1076 -2.4338 16 6 1.4641 1.2676 -2.5351 17 6 2.3738 -0.8277 -3.6402 18 6 1.1738 -1.5742 -4.2266 19 6 1.6073 -2.3268 -5.4862 20 7 0.4585 -3.0421 -6.0473 21 6 -0.4034 -2.3849 -7.0330 22 6 0.1903 -4.3249 -5.6504 23 1 0.5627 -4.6861 -4.7032 24 6 -0.5603 -5.1611 -6.4655 25 7 -0.8408 -4.7990 -7.6994 26 14 -1.1723 -6.8002 -5.8112 27 1 -2.0466 -6.5678 -4.6337 28 1 -1.9432 -7.4993 -6.8705 29 1 -0.0130 -7.6368 -5.4096 30 1 -0.3633 -1.0264 -0.0519 31 1 -0.3634 0.4682 0.9147 32 1 -0.3634 0.5580 -0.8629 33 1 2.2491 -1.6317 1.1525 34 1 2.8626 -2.6137 2.5786 35 1 3.6898 -3.7616 4.5905 36 1 3.9225 -2.5299 6.7072 37 1 3.3393 -0.1428 6.8230 38 1 2.5188 1.0262 4.8205 39 1 2.2854 1.9630 -2.3619 40 1 1.0519 1.4330 -3.5306 41 1 0.6867 1.4301 -1.7885 42 1 2.7539 -0.1175 -4.3746 43 1 3.1570 -1.5417 -3.3859 44 1 0.7937 -2.2844 -3.4923 45 1 0.3906 -0.8602 -4.4809 46 1 1.9878 -1.6169 -6.2207 47 1 2.3904 -3.0408 -5.2315 48 1 -0.0607 -2.6325 -8.0377 49 1 -1.4299 -2.7282 -6.9044 50 1 -0.3609 -1.3052 -6.8904 51 1 -1.3656 -5.3830 -8.2690 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001673486297.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:01:53 Heat of formation + Delta-G solvation = -37.279517 kcal Electronic energy + Delta-G solvation = -30075.340388 eV Core-core repulsion = 25974.877047 eV Total energy + Delta-G solvation = -4100.463341 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.80726 -40.78955 -39.23491 -37.98906 -36.83819 -36.25700 -34.19548 -33.07360 -31.99030 -31.88216 -30.85174 -28.10917 -27.88822 -27.22133 -25.74341 -24.57281 -23.62427 -23.15784 -21.97273 -21.48665 -20.56507 -19.35593 -18.74180 -18.07022 -17.63866 -17.13808 -16.90196 -16.69130 -16.45895 -16.20112 -15.80825 -15.74749 -15.49012 -15.30414 -14.90948 -14.66732 -14.60188 -14.52989 -14.39173 -14.18275 -13.69052 -13.64374 -13.48739 -13.29948 -13.06728 -12.89764 -12.78230 -12.65499 -12.57693 -12.53637 -12.49982 -12.22150 -12.11099 -12.04784 -11.89132 -11.41659 -11.19920 -10.98607 -10.65235 -10.42082 -9.98200 -9.94420 -9.76002 -8.76004 -7.84103 -5.32223 -0.19010 0.38797 1.38031 1.43274 1.45279 1.52280 1.60907 1.76744 2.21649 2.49395 2.86683 3.24033 3.29394 3.58594 3.70332 3.86637 3.93064 3.96327 3.99689 4.06465 4.18791 4.23432 4.35831 4.44393 4.47902 4.51379 4.54753 4.57656 4.65744 4.69396 4.76248 4.83128 4.86398 4.88164 4.93551 5.03536 5.11316 5.16185 5.26960 5.28006 5.32180 5.42133 5.47508 5.48779 5.55539 5.61012 5.72675 5.92199 6.25150 6.30935 6.32722 6.94313 6.99447 7.15529 7.88638 8.30014 9.18813 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.013015 B = 0.002120 C = 0.001904 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2150.858964 B =13206.246570 C =14699.897381 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.132 3.868 3 H 0.121 0.879 4 N -0.708 5.708 5 C 0.563 3.437 6 O -0.568 6.568 7 C -0.158 4.158 8 C -0.093 4.093 9 C -0.131 4.131 10 C -0.089 4.089 11 C -0.129 4.129 12 C -0.073 4.073 13 C 0.506 3.494 14 O -0.573 6.573 15 N -0.605 5.605 16 C 0.058 3.942 17 C 0.124 3.876 18 C -0.129 4.129 19 C 0.152 3.848 20 N -0.623 5.623 21 C 0.180 3.820 22 C -0.260 4.260 23 H 0.061 0.939 24 C -0.055 4.055 25 N -0.939 5.939 26 Si 0.967 3.033 27 H -0.281 1.281 28 H -0.290 1.290 29 H -0.277 1.277 30 H 0.055 0.945 31 H 0.075 0.925 32 H 0.096 0.904 33 H 0.412 0.588 34 H 0.131 0.869 35 H 0.151 0.849 36 H 0.157 0.843 37 H 0.155 0.845 38 H 0.131 0.869 39 H 0.079 0.921 40 H 0.093 0.907 41 H 0.087 0.913 42 H 0.109 0.891 43 H 0.066 0.934 44 H 0.026 0.974 45 H 0.061 0.939 46 H 0.060 0.940 47 H 0.035 0.965 48 H 0.002 0.998 49 H 0.016 0.984 50 H 0.033 0.967 51 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.356 13.943 24.954 29.781 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.023 3.977 3 H 0.139 0.861 4 N -0.362 5.362 5 C 0.352 3.648 6 O -0.449 6.449 7 C -0.161 4.161 8 C -0.111 4.111 9 C -0.149 4.149 10 C -0.107 4.107 11 C -0.147 4.147 12 C -0.092 4.092 13 C 0.293 3.707 14 O -0.453 6.453 15 N -0.336 5.336 16 C -0.083 4.083 17 C 0.001 3.999 18 C -0.171 4.171 19 C 0.025 3.975 20 N -0.347 5.347 21 C 0.035 3.965 22 C -0.390 4.390 23 H 0.079 0.921 24 C -0.250 4.250 25 N -0.586 5.586 26 Si 0.795 3.205 27 H -0.207 1.207 28 H -0.216 1.216 29 H -0.203 1.203 30 H 0.074 0.926 31 H 0.094 0.906 32 H 0.114 0.886 33 H 0.250 0.750 34 H 0.149 0.851 35 H 0.168 0.832 36 H 0.175 0.825 37 H 0.173 0.827 38 H 0.149 0.851 39 H 0.097 0.903 40 H 0.111 0.889 41 H 0.105 0.895 42 H 0.127 0.873 43 H 0.084 0.916 44 H 0.045 0.955 45 H 0.080 0.920 46 H 0.079 0.921 47 H 0.054 0.946 48 H 0.020 0.980 49 H 0.035 0.965 50 H 0.051 0.949 51 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 8.309 14.132 24.836 29.758 hybrid contribution -0.515 -1.577 -0.326 1.691 sum 7.794 12.555 24.510 28.620 Atomic orbital electron populations 1.22167 0.91516 1.03228 1.04553 1.20806 0.96570 0.97845 0.82452 0.86108 1.45762 1.66805 1.15119 1.08490 1.18589 0.76692 0.86101 0.83407 1.90730 1.52046 1.16562 1.85534 1.19892 1.06945 0.95315 0.93972 1.21550 0.96656 0.92920 1.00020 1.21486 0.99415 1.01604 0.92418 1.21820 0.95855 0.94315 0.98679 1.21497 0.99062 0.95370 0.98770 1.21407 0.95828 1.00503 0.91493 1.20888 0.78176 0.86013 0.85610 1.90685 1.47028 1.21178 1.86382 1.47904 1.63773 1.16070 1.05875 1.22343 1.00788 0.79890 1.05319 1.21469 0.96325 0.96465 0.85671 1.22287 0.98246 0.98560 0.97961 1.20804 0.88691 0.94410 0.93558 1.44156 1.29380 1.12178 1.48949 1.20519 0.93224 0.91703 0.91031 1.19395 1.30150 0.89314 1.00170 0.92138 1.25774 1.02395 1.01326 0.95505 1.70214 1.43296 1.38347 1.06778 0.85345 0.78153 0.79932 0.77061 1.20676 1.21576 1.20292 0.92629 0.90570 0.88573 0.74969 0.85140 0.83152 0.82493 0.82730 0.85131 0.90266 0.88870 0.89481 0.87295 0.91573 0.95468 0.92040 0.92135 0.94632 0.97987 0.96535 0.94894 0.94218 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.06 9.21 71.98 0.66 -2.40 16 2 C 0.13 2.88 2.15 44.24 0.10 2.98 16 3 H 0.12 2.43 6.89 -2.38 -0.02 2.41 16 4 N -0.71 -16.20 4.97 -448.98 -2.23 -18.43 16 5 C 0.56 13.55 7.74 86.79 0.67 14.22 16 6 O -0.57 -16.25 16.01 -3.90 -0.06 -16.31 16 7 C -0.16 -3.20 5.87 -20.09 -0.12 -3.32 16 8 C -0.09 -1.56 9.54 22.53 0.21 -1.34 16 9 C -0.13 -1.65 10.03 22.23 0.22 -1.42 16 10 C -0.09 -0.91 10.04 22.33 0.22 -0.68 16 11 C -0.13 -1.54 10.03 22.23 0.22 -1.32 16 12 C -0.07 -1.28 9.60 22.52 0.22 -1.07 16 13 C 0.51 13.49 6.97 87.65 0.61 14.10 16 14 O -0.57 -19.70 15.42 -3.02 -0.05 -19.75 16 15 N -0.60 -13.80 2.87 -846.77 -2.43 -16.23 16 16 C 0.06 0.81 9.86 127.77 1.26 2.07 16 17 C 0.12 3.22 5.41 86.38 0.47 3.68 16 18 C -0.13 -4.38 5.86 30.59 0.18 -4.20 16 19 C 0.15 6.11 5.65 86.38 0.49 6.60 16 20 N -0.62 -32.03 2.93 -726.91 -2.13 -34.16 16 21 C 0.18 8.98 8.96 127.77 1.15 10.13 16 22 C -0.26 -14.88 9.67 84.04 0.81 -14.07 16 23 H 0.06 3.46 7.85 -2.91 -0.02 3.44 16 24 C -0.06 -3.20 5.14 84.86 0.44 -2.77 16 25 N -0.94 -56.74 10.55 21.65 0.23 -56.51 16 26 Si 0.97 46.64 29.57 68.60 2.03 48.67 16 27 H -0.28 -13.22 7.11 99.48 0.71 -12.51 16 28 H -0.29 -13.84 7.11 99.48 0.71 -13.14 16 29 H -0.28 -12.98 7.11 99.48 0.71 -12.28 16 30 H 0.05 1.23 8.14 -2.39 -0.02 1.22 16 31 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 32 H 0.10 1.51 5.86 -2.39 -0.01 1.50 16 33 H 0.41 9.30 5.75 -92.71 -0.53 8.77 16 34 H 0.13 2.04 6.41 -2.91 -0.02 2.02 16 35 H 0.15 1.21 8.06 -2.91 -0.02 1.19 16 36 H 0.16 0.65 8.06 -2.91 -0.02 0.63 16 37 H 0.16 0.99 8.06 -2.91 -0.02 0.96 16 38 H 0.13 2.33 7.65 -2.91 -0.02 2.31 16 39 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 40 H 0.09 1.12 8.04 -2.39 -0.02 1.10 16 41 H 0.09 1.03 4.57 -2.39 -0.01 1.02 16 42 H 0.11 2.14 8.07 -2.38 -0.02 2.12 16 43 H 0.07 1.98 7.37 -2.39 -0.02 1.97 16 44 H 0.03 1.10 8.14 -2.39 -0.02 1.08 16 45 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 46 H 0.06 2.13 8.07 -2.38 -0.02 2.11 16 47 H 0.04 1.50 8.04 -2.39 -0.02 1.48 16 48 H 0.00 0.10 7.46 -2.38 -0.02 0.08 16 49 H 0.02 0.88 7.12 -2.39 -0.02 0.86 16 50 H 0.03 1.35 8.04 -2.39 -0.02 1.33 16 51 H 0.25 14.57 8.31 -92.71 -0.77 13.80 16 Total: -1.00 -77.39 415.77 3.56 -73.83 By element: Atomic # 1 Polarization: 17.33 SS G_CDS: 0.40 Total: 17.73 kcal Atomic # 6 Polarization: 13.36 SS G_CDS: 7.81 Total: 21.17 kcal Atomic # 7 Polarization: -118.78 SS G_CDS: -6.56 Total: -125.34 kcal Atomic # 8 Polarization: -35.95 SS G_CDS: -0.11 Total: -36.06 kcal Atomic # 14 Polarization: 46.64 SS G_CDS: 2.03 Total: 48.67 kcal Total: -77.39 3.56 -73.83 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001673486297.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.548 kcal (2) G-P(sol) polarization free energy of solvation -77.391 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.843 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.563 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.827 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds