Wall clock time and date at job start Wed Apr 1 2020 05:13:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 O 1.21289 * 119.99480 * 2 1 4 4 N 1.34774 * 120.00234 * 180.02562 * 2 1 3 5 5 C 1.46501 * 119.99772 * 180.02562 * 4 2 1 6 6 H 1.08997 * 109.46958 * 324.99283 * 5 4 2 7 7 C 1.52995 * 109.47442 * 84.99890 * 5 4 2 8 8 C 1.50707 * 109.46660 * 204.99709 * 5 4 2 9 9 O 1.21284 * 119.99995 * 359.97438 * 8 5 4 10 10 N 1.34775 * 119.99766 * 179.97438 * 8 5 4 11 11 C 1.46497 * 120.00290 * 179.97438 * 10 8 5 12 12 H 1.09002 * 109.47031 * 34.99871 * 11 10 8 13 13 C 1.52992 * 109.47408 * 154.99725 * 11 10 8 14 14 C 1.52997 * 109.47482 * 295.00294 * 13 11 10 15 15 C 1.53000 * 109.47060 * 180.02562 * 14 13 11 16 16 N 1.46499 * 109.46840 * 180.02562 * 15 14 13 17 17 C 1.36936 * 120.00002 * 179.97438 * 16 15 14 18 18 H 1.08004 * 120.00140 * 359.97438 * 17 16 15 19 19 C 1.38814 * 120.00175 * 180.02562 * 17 16 15 20 20 N 1.31624 * 120.00147 * 180.02562 * 19 17 16 21 21 Si 1.86804 * 119.99891 * 359.97438 * 19 17 16 22 22 H 1.48494 * 109.47166 * 90.00248 * 21 19 17 23 23 H 1.48501 * 109.46982 * 210.00125 * 21 19 17 24 24 H 1.48496 * 109.46958 * 329.99751 * 21 19 17 25 25 C 1.50699 * 109.47154 * 275.00360 * 11 10 8 26 26 C 1.38236 * 119.99912 * 319.72339 * 25 11 10 27 27 C 1.38240 * 120.00151 * 179.81152 * 26 25 11 28 28 C 1.38231 * 119.99531 * 0.39579 * 27 26 25 29 29 C 1.38233 * 120.00345 * 359.85881 * 28 27 26 30 30 C 1.38232 * 120.00107 * 359.95306 * 29 28 27 31 31 H 1.08995 * 109.46685 * 270.00082 * 1 2 3 32 32 H 1.09003 * 109.47115 * 30.00131 * 1 2 3 33 33 H 1.09000 * 109.46530 * 150.00058 * 1 2 3 34 34 H 0.96998 * 119.99612 * 359.97438 * 4 2 1 35 35 H 1.09007 * 109.47141 * 59.99313 * 7 5 4 36 36 H 1.08994 * 109.47589 * 179.97438 * 7 5 4 37 37 H 1.09001 * 109.46860 * 300.00013 * 7 5 4 38 38 H 0.97003 * 119.99861 * 0.02562 * 10 8 5 39 39 H 1.09002 * 109.47103 * 175.00047 * 13 11 10 40 40 H 1.08998 * 109.46862 * 55.00859 * 13 11 10 41 41 H 1.09002 * 109.47153 * 59.99783 * 14 13 11 42 42 H 1.09001 * 109.46832 * 299.99974 * 14 13 11 43 43 H 1.09001 * 109.47194 * 299.99650 * 15 14 13 44 44 H 1.08992 * 109.47399 * 59.99823 * 15 14 13 45 45 H 0.97005 * 120.00448 * 359.97438 * 16 15 14 46 46 H 0.96996 * 119.99724 * 180.02562 * 20 19 17 47 47 H 1.08006 * 119.99710 * 359.97438 * 26 25 11 48 48 H 1.07995 * 120.00176 * 180.22759 * 27 26 25 49 49 H 1.08006 * 119.99475 * 179.83643 * 28 27 26 50 50 H 1.08003 * 120.00170 * 179.97438 * 29 28 27 51 51 H 1.07994 * 120.00242 * 180.02562 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1810 -1.1672 -0.0005 5 6 3.6460 -1.1670 0.0000 6 1 4.0095 -0.3249 -0.5888 7 6 4.1555 -1.0422 1.4373 8 6 4.1486 -2.4544 -0.6011 9 8 3.3606 -3.2899 -0.9910 10 7 5.4737 -2.6773 -0.7053 11 6 5.9624 -3.9289 -1.2891 12 1 5.2898 -4.2447 -2.0866 13 6 7.3647 -3.7117 -1.8607 14 6 7.2931 -2.7225 -3.0257 15 6 8.6955 -2.5059 -3.5978 16 7 8.6269 -1.5583 -4.7129 17 6 9.7675 -1.2081 -5.3849 18 1 10.7177 -1.6301 -5.0926 19 6 9.7027 -0.3098 -6.4412 20 7 10.7989 0.0265 -7.0875 21 14 8.0593 0.4208 -6.9464 22 1 7.8221 1.6762 -6.1896 23 1 8.0752 0.7157 -8.4018 24 1 6.9744 -0.5488 -6.6497 25 6 6.0134 -4.9937 -0.2239 26 6 6.4514 -4.6780 1.0486 27 6 6.4945 -5.6539 2.0268 28 6 6.1073 -6.9473 1.7301 29 6 5.6743 -7.2642 0.4562 30 6 5.6275 -6.2875 -0.5209 31 1 -0.3632 0.0000 1.0276 32 1 -0.3633 0.8900 -0.5139 33 1 -0.3632 -0.8900 -0.5138 34 1 1.6960 -2.0072 -0.0005 35 1 3.7919 -1.8844 2.0261 36 1 5.2454 -1.0426 1.4377 37 1 3.7919 -0.1111 1.8720 38 1 6.1039 -2.0092 -0.3930 39 1 7.7639 -4.6621 -2.2151 40 1 8.0158 -3.3114 -1.0836 41 1 6.8940 -1.7721 -2.6714 42 1 6.6420 -3.1230 -3.8028 43 1 9.3470 -2.1057 -2.8209 44 1 9.0942 -3.4564 -3.9522 45 1 7.7736 -1.1789 -4.9753 46 1 10.7536 0.6545 -7.8253 47 1 6.7574 -3.6683 1.2793 48 1 6.8332 -5.4064 3.0219 49 1 6.1435 -7.7104 2.4936 50 1 5.3722 -8.2749 0.2243 51 1 5.2888 -6.5350 -1.5161 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001676139989.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:13:22 Heat of formation + Delta-G solvation = -48.009495 kcal Electronic energy + Delta-G solvation = -30377.243958 eV Core-core repulsion = 26276.315331 eV Total energy + Delta-G solvation = -4100.928628 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.87328 -39.84734 -38.94226 -36.75079 -35.28596 -35.02563 -32.94593 -32.05609 -31.29860 -31.03082 -30.52697 -29.17270 -27.33155 -24.99362 -24.06295 -22.85300 -22.13460 -21.32367 -21.00345 -20.69880 -20.49113 -18.18792 -17.57955 -17.28586 -16.94346 -16.51009 -15.82572 -15.79445 -15.50416 -15.04593 -14.83766 -14.70634 -14.48270 -14.11426 -13.99160 -13.86886 -13.61542 -13.43489 -13.24757 -13.06266 -12.90968 -12.74786 -12.71081 -12.44591 -12.39125 -12.11424 -11.97729 -11.82566 -11.45315 -11.24054 -11.05288 -10.93554 -10.59762 -10.58509 -10.26317 -10.15440 -10.12727 -9.59742 -9.51769 -9.43374 -9.11639 -8.91326 -8.89239 -7.23266 -5.76845 -3.12406 1.11193 1.20076 2.23802 2.32292 2.54523 3.10443 3.38386 3.41531 3.46171 3.58113 4.24097 4.41703 4.50007 4.59653 4.63430 4.66044 4.75018 4.77725 4.84089 4.88668 4.90389 5.01171 5.03556 5.15851 5.18031 5.27439 5.34407 5.36088 5.46334 5.50220 5.55123 5.68209 5.70529 5.75303 5.81428 5.87767 5.94843 5.99466 6.02184 6.11176 6.22361 6.25267 6.29771 6.44159 6.71239 6.74636 6.78022 7.13549 7.15961 7.83564 7.88996 7.99412 8.42425 9.21550 9.94115 10.13738 11.41632 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.006538 B = 0.003242 C = 0.002309 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4281.568653 B = 8635.738721 C =12122.987575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.513 3.487 3 O -0.546 6.546 4 N -0.714 5.714 5 C 0.121 3.879 6 H 0.117 0.883 7 C -0.158 4.158 8 C 0.516 3.484 9 O -0.534 6.534 10 N -0.713 5.713 11 C 0.186 3.814 12 H 0.099 0.901 13 C -0.117 4.117 14 C -0.130 4.130 15 C 0.158 3.842 16 N -0.758 5.758 17 C -0.245 4.245 18 H 0.090 0.910 19 C 0.004 3.996 20 N -0.935 5.935 21 Si 0.885 3.115 22 H -0.284 1.284 23 H -0.290 1.290 24 H -0.278 1.278 25 C -0.089 4.089 26 C -0.106 4.106 27 C -0.122 4.122 28 C -0.123 4.123 29 C -0.120 4.120 30 C -0.104 4.104 31 H 0.094 0.906 32 H 0.095 0.905 33 H 0.081 0.919 34 H 0.410 0.590 35 H 0.063 0.937 36 H 0.072 0.928 37 H 0.074 0.926 38 H 0.404 0.596 39 H 0.084 0.916 40 H 0.073 0.927 41 H 0.062 0.938 42 H 0.063 0.937 43 H 0.026 0.974 44 H 0.026 0.974 45 H 0.360 0.640 46 H 0.260 0.740 47 H 0.118 0.882 48 H 0.120 0.880 49 H 0.119 0.881 50 H 0.121 0.879 51 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.476 -10.970 23.015 31.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.301 3.699 3 O -0.423 6.423 4 N -0.368 5.368 5 C 0.013 3.987 6 H 0.134 0.866 7 C -0.217 4.217 8 C 0.301 3.699 9 O -0.410 6.410 10 N -0.365 5.365 11 C 0.081 3.919 12 H 0.117 0.883 13 C -0.156 4.156 14 C -0.168 4.168 15 C 0.030 3.970 16 N -0.403 5.403 17 C -0.375 4.375 18 H 0.108 0.892 19 C -0.192 4.192 20 N -0.583 5.583 21 Si 0.715 3.285 22 H -0.210 1.210 23 H -0.217 1.217 24 H -0.204 1.204 25 C -0.090 4.090 26 C -0.124 4.124 27 C -0.140 4.140 28 C -0.141 4.141 29 C -0.138 4.138 30 C -0.122 4.122 31 H 0.112 0.888 32 H 0.113 0.887 33 H 0.100 0.900 34 H 0.247 0.753 35 H 0.082 0.918 36 H 0.091 0.909 37 H 0.093 0.907 38 H 0.240 0.760 39 H 0.102 0.898 40 H 0.091 0.909 41 H 0.081 0.919 42 H 0.081 0.919 43 H 0.044 0.956 44 H 0.044 0.956 45 H 0.193 0.807 46 H 0.070 0.930 47 H 0.136 0.864 48 H 0.138 0.862 49 H 0.137 0.863 50 H 0.139 0.861 51 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -18.364 -10.803 22.638 31.087 hybrid contribution -0.951 0.420 -0.326 1.090 sum -19.315 -10.383 22.311 31.284 Atomic orbital electron populations 1.21871 0.91191 1.05181 1.04842 1.20865 0.90781 0.83137 0.75158 1.90749 1.70728 1.31322 1.49501 1.45858 1.05667 1.09768 1.75556 1.20778 0.82380 0.97013 0.98557 0.86576 1.22121 1.01725 1.03518 0.94299 1.20529 0.82831 0.88124 0.78399 1.90699 1.55167 1.46537 1.48577 1.45974 1.06696 1.20527 1.63273 1.19978 0.96972 0.81673 0.93255 0.88301 1.21826 0.93892 1.01386 0.98465 1.21800 0.99284 0.98739 0.96952 1.20606 0.93283 0.93080 0.89981 1.42727 1.07014 1.53040 1.37545 1.19067 0.87598 1.20920 1.09899 0.89241 1.24682 0.96555 0.99681 0.98279 1.69704 1.26132 1.37893 1.24542 0.86543 0.84683 0.79370 0.77904 1.21024 1.21677 1.20378 1.20186 0.98960 0.94753 0.95114 1.20906 0.99433 0.99281 0.92778 1.21115 1.00323 0.93371 0.99200 1.21141 0.99618 0.96594 0.96785 1.21126 0.99964 0.99281 0.93409 1.21023 0.99067 0.92525 0.99601 0.88752 0.88650 0.89965 0.75295 0.91754 0.90863 0.90696 0.76027 0.89754 0.90866 0.91947 0.91859 0.95614 0.95619 0.80712 0.93046 0.86369 0.86241 0.86319 0.86113 0.85947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.99 10.30 36.01 0.37 -0.62 16 2 C 0.51 5.07 7.90 -10.98 -0.09 4.99 16 3 O -0.55 -7.68 16.76 5.55 0.09 -7.59 16 4 N -0.71 -6.40 4.95 -54.93 -0.27 -6.67 16 5 C 0.12 1.12 2.98 -69.08 -0.21 0.92 16 6 H 0.12 1.21 7.58 -51.93 -0.39 0.81 16 7 C -0.16 -1.15 9.38 37.15 0.35 -0.80 16 8 C 0.52 5.38 7.18 -10.98 -0.08 5.30 16 9 O -0.53 -7.10 15.50 5.55 0.09 -7.02 16 10 N -0.71 -6.41 3.67 -54.93 -0.20 -6.62 16 11 C 0.19 1.86 2.17 -69.09 -0.15 1.71 16 12 H 0.10 1.15 7.44 -51.93 -0.39 0.77 16 13 C -0.12 -1.23 4.73 -26.74 -0.13 -1.35 16 14 C -0.13 -1.80 5.22 -26.73 -0.14 -1.94 16 15 C 0.16 2.93 6.26 -4.04 -0.03 2.91 16 16 N -0.76 -18.17 5.41 -59.91 -0.32 -18.49 16 17 C -0.24 -7.04 10.47 -15.06 -0.16 -7.19 16 18 H 0.09 2.74 8.06 -52.48 -0.42 2.31 16 19 C 0.00 0.11 5.50 -17.43 -0.10 0.02 16 20 N -0.93 -29.72 13.97 55.49 0.78 -28.94 16 21 Si 0.88 22.51 27.74 -169.99 -4.71 17.80 16 22 H -0.28 -7.16 7.11 56.52 0.40 -6.76 16 23 H -0.29 -7.46 7.11 56.52 0.40 -7.06 16 24 H -0.28 -6.68 6.52 56.52 0.37 -6.31 16 25 C -0.09 -0.88 4.91 -104.62 -0.51 -1.39 16 26 C -0.11 -0.95 9.32 -39.58 -0.37 -1.31 16 27 C -0.12 -1.03 10.05 -39.58 -0.40 -1.42 16 28 C -0.12 -1.03 10.05 -39.59 -0.40 -1.43 16 29 C -0.12 -1.06 10.05 -39.59 -0.40 -1.46 16 30 C -0.10 -1.02 9.67 -39.58 -0.38 -1.41 16 31 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 34 H 0.41 3.25 7.79 -40.82 -0.32 2.93 16 35 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.07 0.41 7.56 -51.93 -0.39 0.02 16 37 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.40 2.88 8.02 -40.82 -0.33 2.55 16 39 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 40 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 41 H 0.06 0.85 7.75 -51.93 -0.40 0.45 16 42 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 43 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 44 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 45 H 0.36 8.47 5.53 -40.82 -0.23 8.25 16 46 H 0.26 7.84 8.31 -40.82 -0.34 7.50 16 47 H 0.12 0.88 7.73 -52.48 -0.41 0.47 16 48 H 0.12 0.77 8.06 -52.49 -0.42 0.35 16 49 H 0.12 0.75 8.06 -52.48 -0.42 0.32 16 50 H 0.12 0.84 8.06 -52.48 -0.42 0.42 16 51 H 0.12 1.11 8.04 -52.49 -0.42 0.69 16 LS Contribution 424.28 15.07 6.39 6.39 Total: -1.00 -36.99 424.28 -9.33 -46.32 By element: Atomic # 1 Polarization: 17.68 SS G_CDS: -8.36 Total: 9.32 kcal Atomic # 6 Polarization: -1.69 SS G_CDS: -2.81 Total: -4.50 kcal Atomic # 7 Polarization: -60.70 SS G_CDS: -0.02 Total: -60.72 kcal Atomic # 8 Polarization: -14.79 SS G_CDS: 0.18 Total: -14.61 kcal Atomic # 14 Polarization: 22.51 SS G_CDS: -4.71 Total: 17.80 kcal Total LS contribution 6.39 Total: 6.39 kcal Total: -36.99 -9.33 -46.32 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001676139989.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.693 kcal (2) G-P(sol) polarization free energy of solvation -36.986 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.317 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.009 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds