Wall clock time and date at job start Wed Apr 1 2020 05:13:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 O 1.21289 * 119.99480 * 2 1 4 4 N 1.34774 * 120.00234 * 180.02562 * 2 1 3 5 5 C 1.46501 * 119.99772 * 180.02562 * 4 2 1 6 6 H 1.08997 * 109.46958 * 324.99283 * 5 4 2 7 7 C 1.52995 * 109.47442 * 84.99890 * 5 4 2 8 8 C 1.50707 * 109.46660 * 204.99709 * 5 4 2 9 9 O 1.21284 * 119.99995 * 359.97438 * 8 5 4 10 10 N 1.34775 * 119.99766 * 179.97438 * 8 5 4 11 11 C 1.46497 * 120.00290 * 179.97438 * 10 8 5 12 12 H 1.09002 * 109.47031 * 34.99871 * 11 10 8 13 13 C 1.52992 * 109.47408 * 154.99725 * 11 10 8 14 14 C 1.52997 * 109.47482 * 295.00294 * 13 11 10 15 15 C 1.53000 * 109.47060 * 180.02562 * 14 13 11 16 16 N 1.46499 * 109.46840 * 180.02562 * 15 14 13 17 17 C 1.36936 * 120.00002 * 179.97438 * 16 15 14 18 18 H 1.08004 * 120.00140 * 359.97438 * 17 16 15 19 19 C 1.38814 * 120.00175 * 180.02562 * 17 16 15 20 20 N 1.31624 * 120.00147 * 180.02562 * 19 17 16 21 21 Si 1.86804 * 119.99891 * 359.97438 * 19 17 16 22 22 H 1.48494 * 109.47166 * 90.00248 * 21 19 17 23 23 H 1.48501 * 109.46982 * 210.00125 * 21 19 17 24 24 H 1.48496 * 109.46958 * 329.99751 * 21 19 17 25 25 C 1.50699 * 109.47154 * 275.00360 * 11 10 8 26 26 C 1.38236 * 119.99912 * 319.72339 * 25 11 10 27 27 C 1.38240 * 120.00151 * 179.81152 * 26 25 11 28 28 C 1.38231 * 119.99531 * 0.39579 * 27 26 25 29 29 C 1.38233 * 120.00345 * 359.85881 * 28 27 26 30 30 C 1.38232 * 120.00107 * 359.95306 * 29 28 27 31 31 H 1.08995 * 109.46685 * 270.00082 * 1 2 3 32 32 H 1.09003 * 109.47115 * 30.00131 * 1 2 3 33 33 H 1.09000 * 109.46530 * 150.00058 * 1 2 3 34 34 H 0.96998 * 119.99612 * 359.97438 * 4 2 1 35 35 H 1.09007 * 109.47141 * 59.99313 * 7 5 4 36 36 H 1.08994 * 109.47589 * 179.97438 * 7 5 4 37 37 H 1.09001 * 109.46860 * 300.00013 * 7 5 4 38 38 H 0.97003 * 119.99861 * 0.02562 * 10 8 5 39 39 H 1.09002 * 109.47103 * 175.00047 * 13 11 10 40 40 H 1.08998 * 109.46862 * 55.00859 * 13 11 10 41 41 H 1.09002 * 109.47153 * 59.99783 * 14 13 11 42 42 H 1.09001 * 109.46832 * 299.99974 * 14 13 11 43 43 H 1.09001 * 109.47194 * 299.99650 * 15 14 13 44 44 H 1.08992 * 109.47399 * 59.99823 * 15 14 13 45 45 H 0.97005 * 120.00448 * 359.97438 * 16 15 14 46 46 H 0.96996 * 119.99724 * 180.02562 * 20 19 17 47 47 H 1.08006 * 119.99710 * 359.97438 * 26 25 11 48 48 H 1.07995 * 120.00176 * 180.22759 * 27 26 25 49 49 H 1.08006 * 119.99475 * 179.83643 * 28 27 26 50 50 H 1.08003 * 120.00170 * 179.97438 * 29 28 27 51 51 H 1.07994 * 120.00242 * 180.02562 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1810 -1.1672 -0.0005 5 6 3.6460 -1.1670 0.0000 6 1 4.0095 -0.3249 -0.5888 7 6 4.1555 -1.0422 1.4373 8 6 4.1486 -2.4544 -0.6011 9 8 3.3606 -3.2899 -0.9910 10 7 5.4737 -2.6773 -0.7053 11 6 5.9624 -3.9289 -1.2891 12 1 5.2898 -4.2447 -2.0866 13 6 7.3647 -3.7117 -1.8607 14 6 7.2931 -2.7225 -3.0257 15 6 8.6955 -2.5059 -3.5978 16 7 8.6269 -1.5583 -4.7129 17 6 9.7675 -1.2081 -5.3849 18 1 10.7177 -1.6301 -5.0926 19 6 9.7027 -0.3098 -6.4412 20 7 10.7989 0.0265 -7.0875 21 14 8.0593 0.4208 -6.9464 22 1 7.8221 1.6762 -6.1896 23 1 8.0752 0.7157 -8.4018 24 1 6.9744 -0.5488 -6.6497 25 6 6.0134 -4.9937 -0.2239 26 6 6.4514 -4.6780 1.0486 27 6 6.4945 -5.6539 2.0268 28 6 6.1073 -6.9473 1.7301 29 6 5.6743 -7.2642 0.4562 30 6 5.6275 -6.2875 -0.5209 31 1 -0.3632 0.0000 1.0276 32 1 -0.3633 0.8900 -0.5139 33 1 -0.3632 -0.8900 -0.5138 34 1 1.6960 -2.0072 -0.0005 35 1 3.7919 -1.8844 2.0261 36 1 5.2454 -1.0426 1.4377 37 1 3.7919 -0.1111 1.8720 38 1 6.1039 -2.0092 -0.3930 39 1 7.7639 -4.6621 -2.2151 40 1 8.0158 -3.3114 -1.0836 41 1 6.8940 -1.7721 -2.6714 42 1 6.6420 -3.1230 -3.8028 43 1 9.3470 -2.1057 -2.8209 44 1 9.0942 -3.4564 -3.9522 45 1 7.7736 -1.1789 -4.9753 46 1 10.7536 0.6545 -7.8253 47 1 6.7574 -3.6683 1.2793 48 1 6.8332 -5.4064 3.0219 49 1 6.1435 -7.7104 2.4936 50 1 5.3722 -8.2749 0.2243 51 1 5.2888 -6.5350 -1.5161 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001676139989.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:13:21 Heat of formation + Delta-G solvation = -73.446315 kcal Electronic energy + Delta-G solvation = -30378.346982 eV Core-core repulsion = 26276.315331 eV Total energy + Delta-G solvation = -4102.031651 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.66839 -40.59876 -39.69687 -37.85943 -36.57079 -36.03371 -34.33544 -33.29609 -32.17819 -31.86329 -31.65892 -29.75275 -28.54181 -26.05199 -25.16120 -23.70304 -23.43100 -22.37219 -22.10891 -21.46077 -21.27008 -19.65554 -18.91789 -18.05039 -17.68940 -17.31882 -16.71600 -16.56089 -16.50095 -16.23257 -15.95329 -15.80235 -15.70651 -15.29426 -14.91711 -14.77491 -14.65725 -14.31758 -14.20635 -14.09507 -13.74210 -13.68120 -13.56249 -13.43834 -13.28935 -13.01365 -12.97841 -12.79029 -12.65407 -12.52111 -12.29228 -12.00936 -11.91801 -11.88135 -11.76189 -11.71766 -11.09832 -10.99602 -10.98028 -10.30035 -10.23720 -9.77172 -9.60010 -9.31446 -8.05387 -5.38646 0.44245 0.54683 1.35855 1.38660 1.44094 1.45890 1.55907 1.81828 2.39857 2.45750 2.90279 3.26306 3.45324 3.52147 3.85601 3.87713 3.89938 3.98107 4.01482 4.08921 4.12974 4.20253 4.31454 4.39356 4.47536 4.51194 4.59910 4.61498 4.64440 4.70357 4.73366 4.75617 4.82095 4.87717 5.05570 5.06048 5.11911 5.12640 5.17968 5.27297 5.29674 5.38558 5.39890 5.60461 5.66160 5.73801 5.74230 6.14733 6.19432 6.39378 6.46061 7.06008 7.06780 7.16215 7.83192 8.00873 9.16290 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.006538 B = 0.003242 C = 0.002309 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4281.568653 B = 8635.738721 C =12122.987575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.508 3.492 3 O -0.594 6.594 4 N -0.709 5.709 5 C 0.121 3.879 6 H 0.104 0.896 7 C -0.150 4.150 8 C 0.519 3.481 9 O -0.564 6.564 10 N -0.703 5.703 11 C 0.195 3.805 12 H 0.081 0.919 13 C -0.105 4.105 14 C -0.116 4.116 15 C 0.152 3.848 16 N -0.762 5.762 17 C -0.236 4.236 18 H 0.057 0.943 19 C -0.064 4.064 20 N -0.984 5.984 21 Si 0.955 3.045 22 H -0.277 1.277 23 H -0.295 1.295 24 H -0.255 1.255 25 C -0.100 4.100 26 C -0.112 4.112 27 C -0.128 4.128 28 C -0.129 4.129 29 C -0.129 4.129 30 C -0.123 4.123 31 H 0.115 0.885 32 H 0.094 0.906 33 H 0.101 0.899 34 H 0.416 0.584 35 H 0.069 0.931 36 H 0.092 0.908 37 H 0.065 0.935 38 H 0.415 0.585 39 H 0.086 0.914 40 H 0.089 0.911 41 H 0.069 0.931 42 H 0.056 0.944 43 H 0.030 0.970 44 H 0.022 0.978 45 H 0.365 0.635 46 H 0.258 0.742 47 H 0.133 0.867 48 H 0.140 0.860 49 H 0.139 0.861 50 H 0.135 0.865 51 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.354 -11.673 25.054 34.326 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.297 3.703 3 O -0.475 6.475 4 N -0.364 5.364 5 C 0.012 3.988 6 H 0.122 0.878 7 C -0.209 4.209 8 C 0.305 3.695 9 O -0.443 6.443 10 N -0.355 5.355 11 C 0.090 3.910 12 H 0.099 0.901 13 C -0.144 4.144 14 C -0.154 4.154 15 C 0.026 3.974 16 N -0.408 5.408 17 C -0.367 4.367 18 H 0.076 0.924 19 C -0.256 4.256 20 N -0.634 5.634 21 Si 0.782 3.218 22 H -0.203 1.203 23 H -0.221 1.221 24 H -0.179 1.179 25 C -0.102 4.102 26 C -0.131 4.131 27 C -0.146 4.146 28 C -0.146 4.146 29 C -0.147 4.147 30 C -0.141 4.141 31 H 0.133 0.867 32 H 0.112 0.888 33 H 0.120 0.880 34 H 0.254 0.746 35 H 0.088 0.912 36 H 0.111 0.889 37 H 0.084 0.916 38 H 0.253 0.747 39 H 0.104 0.896 40 H 0.108 0.892 41 H 0.087 0.913 42 H 0.075 0.925 43 H 0.048 0.952 44 H 0.040 0.960 45 H 0.197 0.803 46 H 0.067 0.933 47 H 0.151 0.849 48 H 0.158 0.842 49 H 0.157 0.843 50 H 0.153 0.847 51 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -20.255 -11.556 24.727 33.989 hybrid contribution -0.278 0.521 -0.891 1.069 sum -20.534 -11.035 23.836 33.340 Atomic orbital electron populations 1.21905 0.87975 1.06078 1.06448 1.21600 0.92353 0.82426 0.73904 1.90724 1.71969 1.32884 1.51930 1.45910 1.05713 1.09945 1.74787 1.20801 0.82719 0.95722 0.99549 0.87786 1.22074 1.02918 1.03165 0.92712 1.20686 0.82921 0.88033 0.77875 1.90687 1.55980 1.47615 1.49988 1.45897 1.06547 1.20477 1.62622 1.19754 0.95968 0.82163 0.93085 0.90092 1.21708 0.94653 1.00527 0.97481 1.21655 0.95895 1.00057 0.97822 1.20828 0.96452 0.91529 0.88543 1.42792 1.05634 1.53913 1.38474 1.19073 0.88053 1.19851 1.09737 0.92448 1.25517 1.00504 1.00800 0.98743 1.69882 1.28817 1.39218 1.25528 0.85413 0.80427 0.78938 0.77023 1.20316 1.22122 1.17931 1.20163 0.99973 0.94544 0.95475 1.21128 0.99211 1.00277 0.92439 1.21434 0.99810 0.93274 1.00056 1.21468 0.98863 0.97292 0.97027 1.21377 0.99898 0.99860 0.93571 1.21190 0.99817 0.93089 1.00050 0.86686 0.88757 0.88010 0.74586 0.91203 0.88942 0.91640 0.74724 0.89590 0.89244 0.91264 0.92479 0.95186 0.96007 0.80252 0.93275 0.84874 0.84209 0.84299 0.84680 0.86114 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.62 10.30 71.24 0.73 -0.89 16 2 C 0.51 9.64 7.90 87.66 0.69 10.33 16 3 O -0.59 -16.74 16.76 -3.06 -0.05 -16.79 16 4 N -0.71 -12.04 4.95 -446.08 -2.21 -14.25 16 5 C 0.12 2.11 2.98 44.25 0.13 2.24 16 6 H 0.10 2.11 7.58 -2.39 -0.02 2.09 16 7 C -0.15 -1.93 9.38 71.98 0.68 -1.25 16 8 C 0.52 10.17 7.18 87.66 0.63 10.80 16 9 O -0.56 -14.55 15.50 -3.04 -0.05 -14.60 16 10 N -0.70 -11.38 3.67 -446.11 -1.64 -13.02 16 11 C 0.20 3.61 2.17 44.24 0.10 3.71 16 12 H 0.08 1.83 7.44 -2.39 -0.02 1.82 16 13 C -0.11 -2.00 4.73 30.59 0.14 -1.85 16 14 C -0.12 -3.03 5.22 30.59 0.16 -2.87 16 15 C 0.15 5.50 6.26 86.38 0.54 6.04 16 16 N -0.76 -35.86 5.41 -343.46 -1.86 -37.72 16 17 C -0.24 -13.69 10.47 84.03 0.88 -12.81 16 18 H 0.06 3.62 8.06 -2.91 -0.02 3.60 16 19 C -0.06 -3.85 5.50 84.86 0.47 -3.38 16 20 N -0.98 -63.90 13.97 21.65 0.30 -63.60 16 21 Si 0.95 46.38 27.74 68.60 1.90 48.28 16 22 H -0.28 -13.10 7.11 99.48 0.71 -12.40 16 23 H -0.29 -14.44 7.11 99.48 0.71 -13.73 16 24 H -0.25 -11.26 6.52 99.48 0.65 -10.61 16 25 C -0.10 -1.82 4.91 -19.87 -0.10 -1.92 16 26 C -0.11 -1.74 9.32 22.27 0.21 -1.53 16 27 C -0.13 -1.81 10.05 22.27 0.22 -1.59 16 28 C -0.13 -1.85 10.05 22.27 0.22 -1.62 16 29 C -0.13 -2.09 10.05 22.27 0.22 -1.86 16 30 C -0.12 -2.31 9.67 22.27 0.22 -2.09 16 31 H 0.11 0.68 8.14 -2.39 -0.02 0.66 16 32 H 0.09 0.98 8.14 -2.39 -0.02 0.97 16 33 H 0.10 0.60 8.14 -2.39 -0.02 0.58 16 34 H 0.42 6.10 7.79 -92.71 -0.72 5.38 16 35 H 0.07 0.83 8.14 -2.38 -0.02 0.81 16 36 H 0.09 0.80 7.56 -2.39 -0.02 0.79 16 37 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 38 H 0.42 4.89 8.02 -92.71 -0.74 4.14 16 39 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 40 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 41 H 0.07 1.72 7.75 -2.39 -0.02 1.70 16 42 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 43 H 0.03 1.08 8.14 -2.39 -0.02 1.06 16 44 H 0.02 0.82 8.14 -2.39 -0.02 0.80 16 45 H 0.36 16.44 5.53 -92.70 -0.51 15.93 16 46 H 0.26 15.95 8.31 -92.71 -0.77 15.18 16 47 H 0.13 1.56 7.73 -2.91 -0.02 1.54 16 48 H 0.14 1.35 8.06 -2.91 -0.02 1.32 16 49 H 0.14 1.35 8.06 -2.91 -0.02 1.33 16 50 H 0.14 1.67 8.06 -2.91 -0.02 1.64 16 51 H 0.12 2.18 8.04 -2.91 -0.02 2.16 16 Total: -1.00 -81.36 424.28 1.46 -79.90 By element: Atomic # 1 Polarization: 33.44 SS G_CDS: -1.09 Total: 32.35 kcal Atomic # 6 Polarization: -6.70 SS G_CDS: 6.15 Total: -0.56 kcal Atomic # 7 Polarization: -123.18 SS G_CDS: -5.40 Total: -128.58 kcal Atomic # 8 Polarization: -31.29 SS G_CDS: -0.10 Total: -31.39 kcal Atomic # 14 Polarization: 46.38 SS G_CDS: 1.90 Total: 48.28 kcal Total: -81.36 1.46 -79.90 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001676139989.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.454 kcal (2) G-P(sol) polarization free energy of solvation -81.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.457 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.901 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.446 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds