Wall clock time and date at job start Wed Apr 1 2020 05:13:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 O 1.21277 * 119.99896 * 2 1 4 4 N 1.34778 * 119.99555 * 180.02562 * 2 1 3 5 5 C 1.46507 * 119.99622 * 179.97438 * 4 2 1 6 6 H 1.08999 * 109.46912 * 34.99840 * 5 4 2 7 7 C 1.53007 * 109.47113 * 275.00176 * 5 4 2 8 8 C 1.50695 * 109.46857 * 155.00038 * 5 4 2 9 9 O 1.21276 * 120.00241 * 359.97438 * 8 5 4 10 10 N 1.34777 * 119.99779 * 179.97438 * 8 5 4 11 11 C 1.46494 * 120.00188 * 180.02562 * 10 8 5 12 12 H 1.09000 * 109.47081 * 325.00162 * 11 10 8 13 13 C 1.53001 * 109.47302 * 205.00083 * 11 10 8 14 14 C 1.52993 * 109.47184 * 64.99847 * 13 11 10 15 15 C 1.53001 * 109.47184 * 179.97438 * 14 13 11 16 16 N 1.46506 * 109.47289 * 179.97438 * 15 14 13 17 17 C 1.36938 * 120.00086 * 179.97438 * 16 15 14 18 18 H 1.07993 * 119.99982 * 0.02562 * 17 16 15 19 19 C 1.38812 * 119.99750 * 180.02562 * 17 16 15 20 20 N 1.31617 * 120.00036 * 0.02562 * 19 17 16 21 21 Si 1.86796 * 119.99531 * 180.02562 * 19 17 16 22 22 H 1.48496 * 109.47360 * 60.00426 * 21 19 17 23 23 H 1.48510 * 109.47006 * 180.02562 * 21 19 17 24 24 H 1.48502 * 109.47405 * 299.99689 * 21 19 17 25 25 C 1.50703 * 109.47581 * 84.99858 * 11 10 8 26 26 C 1.38235 * 120.00292 * 220.00303 * 25 11 10 27 27 C 1.38230 * 119.99899 * 179.97438 * 26 25 11 28 28 C 1.38235 * 120.00326 * 359.95697 * 27 26 25 29 29 C 1.38234 * 119.99814 * 359.97438 * 28 27 26 30 30 C 1.38234 * 119.99503 * 39.97596 * 25 11 10 31 31 H 1.08995 * 109.47202 * 239.99939 * 1 2 3 32 32 H 1.09002 * 109.47120 * 359.97438 * 1 2 3 33 33 H 1.08996 * 109.47376 * 119.99599 * 1 2 3 34 34 H 0.96991 * 120.00277 * 359.97438 * 4 2 1 35 35 H 1.08995 * 109.46969 * 179.97438 * 7 5 4 36 36 H 1.09002 * 109.46879 * 300.00162 * 7 5 4 37 37 H 1.09002 * 109.46690 * 59.99790 * 7 5 4 38 38 H 0.97005 * 119.99889 * 359.97438 * 10 8 5 39 39 H 1.09007 * 109.47213 * 184.99910 * 13 11 10 40 40 H 1.08998 * 109.47120 * 304.99384 * 13 11 10 41 41 H 1.09001 * 109.47226 * 299.99717 * 14 13 11 42 42 H 1.08995 * 109.47539 * 60.00280 * 14 13 11 43 43 H 1.09000 * 109.47541 * 299.99853 * 15 14 13 44 44 H 1.09000 * 109.47281 * 60.00054 * 15 14 13 45 45 H 0.96998 * 119.99754 * 0.02562 * 16 15 14 46 46 H 0.96998 * 119.99415 * 180.02562 * 20 19 17 47 47 H 1.08001 * 119.99730 * 359.97438 * 26 25 11 48 48 H 1.08000 * 120.00376 * 179.97438 * 27 26 25 49 49 H 1.08000 * 120.00616 * 179.72578 * 28 27 26 50 50 H 1.08001 * 120.00299 * 179.97438 * 29 28 27 51 51 H 1.07997 * 120.00455 * 0.02562 * 30 25 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1808 -1.1673 -0.0005 5 6 3.6459 -1.1673 -0.0011 6 1 4.0094 -0.3256 0.5884 7 6 4.1554 -1.0412 -1.4383 8 6 4.1484 -2.4551 0.5989 9 8 3.3604 -3.2904 0.9890 10 7 5.4735 -2.6786 0.7019 11 6 5.9620 -3.9307 1.2846 12 1 5.2900 -4.2467 2.0825 13 6 7.3650 -3.7144 1.8553 14 6 7.2947 -2.7259 3.0209 15 6 8.6976 -2.5101 3.5920 16 7 8.6304 -1.5630 4.7078 17 6 9.7715 -1.2145 5.3798 18 1 10.7210 -1.6374 5.0870 19 6 9.7076 -0.3175 6.4373 20 7 8.5502 0.1975 6.7944 21 14 11.2643 0.1585 7.3534 22 1 12.2227 0.7858 6.4084 23 1 10.9288 1.1228 8.4318 24 1 11.8789 -1.0551 7.9490 25 6 6.0118 -4.9951 0.2189 26 6 5.6257 -6.2888 0.5155 27 6 5.6709 -7.2649 -0.4622 28 6 6.1014 -6.9472 -1.7368 29 6 6.4862 -5.6531 -2.0338 30 6 6.4432 -4.6774 -1.0554 31 1 -0.3633 -0.5138 0.8899 32 1 -0.3633 1.0277 0.0005 33 1 -0.3634 -0.5137 -0.8900 34 1 1.6958 -2.0072 -0.0005 35 1 5.2453 -1.0407 -1.4387 36 1 3.7917 -1.8829 -2.0278 37 1 3.7918 -0.1097 -1.8722 38 1 6.1037 -2.0106 0.3895 39 1 7.7641 -4.6652 2.2089 40 1 8.0157 -3.3139 1.0780 41 1 6.8957 -1.7751 2.6674 42 1 6.6441 -3.1264 3.7983 43 1 9.0962 -3.4610 3.9457 44 1 9.3487 -2.1097 2.8149 45 1 7.7774 -1.1835 4.9710 46 1 8.5057 0.8245 7.5331 47 1 5.2887 -6.5369 1.5112 48 1 5.3696 -8.2758 -0.2304 49 1 6.1410 -7.7108 -2.4995 50 1 6.8230 -5.4049 -3.0295 51 1 6.7449 -3.6667 -1.2872 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001676139991.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:13:29 Heat of formation + Delta-G solvation = -52.137939 kcal Electronic energy + Delta-G solvation = -30272.426182 eV Core-core repulsion = 26171.318532 eV Total energy + Delta-G solvation = -4101.107651 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.79474 -39.78045 -38.87800 -36.63790 -35.19092 -34.85346 -32.88222 -31.99905 -31.23073 -30.97874 -30.12970 -29.09284 -27.05669 -24.89254 -24.04312 -22.82330 -22.37096 -21.28418 -20.83546 -20.62441 -20.41282 -18.11755 -17.29945 -17.00393 -16.86417 -16.43551 -15.75304 -15.72047 -15.44161 -14.97529 -14.79547 -14.65811 -14.42692 -13.98076 -13.95193 -13.65993 -13.56275 -13.34919 -13.14279 -13.01243 -12.93833 -12.82417 -12.66276 -12.38685 -12.24956 -11.90597 -11.86333 -11.70450 -11.25296 -11.17265 -10.85665 -10.83122 -10.58609 -10.47697 -10.18466 -10.07161 -10.06355 -9.70406 -9.43771 -9.34472 -9.07447 -8.86418 -8.85437 -6.91132 -5.74930 -3.03941 1.15717 1.24197 2.32027 2.40802 2.62145 3.18243 3.44966 3.48992 3.50452 3.62762 4.32055 4.47354 4.56718 4.63221 4.68727 4.73377 4.80291 4.85732 4.91443 4.95032 4.98305 5.09086 5.10123 5.22820 5.29993 5.34109 5.41893 5.43497 5.55992 5.57901 5.62567 5.76786 5.79954 5.80972 5.87206 6.01433 6.07421 6.13356 6.19372 6.26756 6.32443 6.33624 6.38354 6.50221 6.82078 6.84139 6.87392 7.21853 7.23863 7.70277 7.91947 7.96970 8.44040 9.54751 10.13325 10.47514 11.47947 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.006827 B = 0.002874 C = 0.002140 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4100.635062 B = 9739.713347 C =13083.226388 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.513 3.487 3 O -0.545 6.545 4 N -0.714 5.714 5 C 0.122 3.878 6 H 0.117 0.883 7 C -0.158 4.158 8 C 0.517 3.483 9 O -0.534 6.534 10 N -0.712 5.712 11 C 0.186 3.814 12 H 0.099 0.901 13 C -0.117 4.117 14 C -0.125 4.125 15 C 0.154 3.846 16 N -0.734 5.734 17 C -0.241 4.241 18 H 0.069 0.931 19 C -0.014 4.014 20 N -0.934 5.934 21 Si 0.908 3.092 22 H -0.286 1.286 23 H -0.291 1.291 24 H -0.286 1.286 25 C -0.088 4.088 26 C -0.104 4.104 27 C -0.120 4.120 28 C -0.124 4.124 29 C -0.122 4.122 30 C -0.106 4.106 31 H 0.090 0.910 32 H 0.093 0.907 33 H 0.088 0.912 34 H 0.410 0.590 35 H 0.072 0.928 36 H 0.063 0.937 37 H 0.074 0.926 38 H 0.404 0.596 39 H 0.082 0.918 40 H 0.071 0.929 41 H 0.062 0.938 42 H 0.063 0.937 43 H 0.017 0.983 44 H 0.017 0.983 45 H 0.383 0.617 46 H 0.256 0.744 47 H 0.123 0.877 48 H 0.121 0.879 49 H 0.118 0.882 50 H 0.119 0.881 51 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.456 -11.185 -22.101 28.189 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.300 3.700 3 O -0.422 6.422 4 N -0.369 5.369 5 C 0.013 3.987 6 H 0.135 0.865 7 C -0.216 4.216 8 C 0.302 3.698 9 O -0.410 6.410 10 N -0.364 5.364 11 C 0.081 3.919 12 H 0.117 0.883 13 C -0.156 4.156 14 C -0.163 4.163 15 C 0.026 3.974 16 N -0.378 5.378 17 C -0.372 4.372 18 H 0.087 0.913 19 C -0.210 4.210 20 N -0.582 5.582 21 Si 0.739 3.261 22 H -0.213 1.213 23 H -0.217 1.217 24 H -0.213 1.213 25 C -0.089 4.089 26 C -0.122 4.122 27 C -0.138 4.138 28 C -0.142 4.142 29 C -0.140 4.140 30 C -0.124 4.124 31 H 0.109 0.891 32 H 0.112 0.888 33 H 0.106 0.894 34 H 0.247 0.753 35 H 0.091 0.909 36 H 0.082 0.918 37 H 0.093 0.907 38 H 0.240 0.760 39 H 0.100 0.900 40 H 0.089 0.911 41 H 0.081 0.919 42 H 0.082 0.918 43 H 0.035 0.965 44 H 0.035 0.965 45 H 0.217 0.783 46 H 0.066 0.934 47 H 0.141 0.859 48 H 0.139 0.861 49 H 0.136 0.864 50 H 0.137 0.863 51 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -13.422 -11.005 -21.736 27.816 hybrid contribution 0.702 0.244 0.498 0.895 sum -12.720 -10.761 -21.238 26.994 Atomic orbital electron populations 1.21902 0.91228 1.05638 1.04453 1.20849 0.90766 0.83142 0.75198 1.90747 1.70771 1.31319 1.49328 1.45810 1.05665 1.09752 1.75668 1.20775 0.82335 0.97071 0.98510 0.86497 1.22120 1.01696 1.03460 0.94353 1.20516 0.82825 0.88105 0.78374 1.90693 1.55176 1.46584 1.48596 1.45959 1.06691 1.20465 1.63267 1.19976 0.97039 0.81638 0.93200 0.88282 1.21836 0.93768 1.01374 0.98573 1.21744 0.99300 0.98603 0.96686 1.20628 0.93209 0.93120 0.90437 1.42367 1.08203 1.51533 1.35743 1.19186 0.87705 1.20516 1.09828 0.91273 1.24753 0.96843 1.00092 0.99339 1.69652 1.23106 1.34529 1.30937 0.86261 0.82569 0.77934 0.79379 1.21259 1.21658 1.21272 1.20215 0.98798 0.94792 0.95124 1.21029 0.99035 0.92542 0.99617 1.21121 1.00015 0.99268 0.93399 1.21132 0.99734 0.96573 0.96775 1.21111 1.00372 0.93384 0.99181 1.20907 0.99481 0.99266 0.92760 0.89149 0.88797 0.89358 0.75335 0.90896 0.91806 0.90723 0.76042 0.89967 0.91079 0.91887 0.91826 0.96482 0.96526 0.78320 0.93441 0.85923 0.86141 0.86361 0.86282 0.86373 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.09 10.32 36.01 0.37 -0.72 16 2 C 0.51 5.36 7.90 -10.98 -0.09 5.28 16 3 O -0.54 -7.99 16.75 5.56 0.09 -7.89 16 4 N -0.71 -6.83 4.95 -54.93 -0.27 -7.10 16 5 C 0.12 1.21 2.98 -69.08 -0.21 1.00 16 6 H 0.12 1.31 7.58 -51.93 -0.39 0.92 16 7 C -0.16 -1.23 9.38 37.16 0.35 -0.88 16 8 C 0.52 5.76 7.18 -10.99 -0.08 5.69 16 9 O -0.53 -7.49 15.50 5.56 0.09 -7.40 16 10 N -0.71 -6.95 3.66 -54.94 -0.20 -7.15 16 11 C 0.19 2.00 2.17 -69.08 -0.15 1.85 16 12 H 0.10 1.24 7.44 -51.93 -0.39 0.85 16 13 C -0.12 -1.32 4.73 -26.73 -0.13 -1.45 16 14 C -0.13 -1.90 5.22 -26.73 -0.14 -2.04 16 15 C 0.15 3.03 6.26 -4.04 -0.03 3.00 16 16 N -0.73 -18.90 5.60 -59.91 -0.34 -19.23 16 17 C -0.24 -6.87 9.99 -15.06 -0.15 -7.02 16 18 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 19 C -0.01 -0.42 5.50 -17.43 -0.10 -0.51 16 20 N -0.93 -28.73 13.06 55.49 0.72 -28.01 16 21 Si 0.91 22.66 29.55 -169.99 -5.02 17.64 16 22 H -0.29 -7.00 7.11 56.52 0.40 -6.59 16 23 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 24 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 25 C -0.09 -0.92 4.91 -104.62 -0.51 -1.43 16 26 C -0.10 -1.07 9.67 -39.59 -0.38 -1.46 16 27 C -0.12 -1.11 10.05 -39.59 -0.40 -1.50 16 28 C -0.12 -1.08 10.05 -39.58 -0.40 -1.47 16 29 C -0.12 -1.07 10.05 -39.58 -0.40 -1.47 16 30 C -0.11 -1.00 9.32 -39.58 -0.37 -1.36 16 31 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.09 0.60 8.12 -51.93 -0.42 0.18 16 33 H 0.09 0.37 8.14 -51.93 -0.42 -0.06 16 34 H 0.41 3.48 7.79 -40.82 -0.32 3.16 16 35 H 0.07 0.45 7.56 -51.93 -0.39 0.06 16 36 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 37 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.40 3.21 8.02 -40.82 -0.33 2.88 16 39 H 0.08 0.92 8.14 -51.92 -0.42 0.50 16 40 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 41 H 0.06 0.96 7.75 -51.93 -0.40 0.56 16 42 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 43 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 44 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 45 H 0.38 10.40 7.67 -40.82 -0.31 10.09 16 46 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 47 H 0.12 1.18 8.04 -52.49 -0.42 0.76 16 48 H 0.12 0.87 8.06 -52.49 -0.42 0.45 16 49 H 0.12 0.78 8.06 -52.49 -0.42 0.35 16 50 H 0.12 0.81 8.06 -52.49 -0.42 0.38 16 51 H 0.12 0.93 7.72 -52.49 -0.41 0.53 16 LS Contribution 427.35 15.07 6.44 6.44 Total: -1.00 -36.18 427.35 -9.69 -45.87 By element: Atomic # 1 Polarization: 19.74 SS G_CDS: -8.40 Total: 11.34 kcal Atomic # 6 Polarization: -1.70 SS G_CDS: -2.80 Total: -4.50 kcal Atomic # 7 Polarization: -61.41 SS G_CDS: -0.08 Total: -61.49 kcal Atomic # 8 Polarization: -15.48 SS G_CDS: 0.18 Total: -15.30 kcal Atomic # 14 Polarization: 22.66 SS G_CDS: -5.02 Total: 17.64 kcal Total LS contribution 6.44 Total: 6.44 kcal Total: -36.18 -9.69 -45.87 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001676139991.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.269 kcal (2) G-P(sol) polarization free energy of solvation -36.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.688 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.869 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.138 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds