Wall clock time and date at job start Wed Apr 1 2020 05:13:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 O 1.21277 * 119.99896 * 2 1 4 4 N 1.34778 * 119.99555 * 180.02562 * 2 1 3 5 5 C 1.46507 * 119.99622 * 179.97438 * 4 2 1 6 6 H 1.08999 * 109.46912 * 34.99840 * 5 4 2 7 7 C 1.53007 * 109.47113 * 275.00176 * 5 4 2 8 8 C 1.50695 * 109.46857 * 155.00038 * 5 4 2 9 9 O 1.21276 * 120.00241 * 359.97438 * 8 5 4 10 10 N 1.34777 * 119.99779 * 179.97438 * 8 5 4 11 11 C 1.46494 * 120.00188 * 180.02562 * 10 8 5 12 12 H 1.09000 * 109.47081 * 325.00162 * 11 10 8 13 13 C 1.53001 * 109.47302 * 205.00083 * 11 10 8 14 14 C 1.52993 * 109.47184 * 64.99847 * 13 11 10 15 15 C 1.53001 * 109.47184 * 179.97438 * 14 13 11 16 16 N 1.46506 * 109.47289 * 179.97438 * 15 14 13 17 17 C 1.36938 * 120.00086 * 179.97438 * 16 15 14 18 18 H 1.07993 * 119.99982 * 0.02562 * 17 16 15 19 19 C 1.38812 * 119.99750 * 180.02562 * 17 16 15 20 20 N 1.31617 * 120.00036 * 0.02562 * 19 17 16 21 21 Si 1.86796 * 119.99531 * 180.02562 * 19 17 16 22 22 H 1.48496 * 109.47360 * 60.00426 * 21 19 17 23 23 H 1.48510 * 109.47006 * 180.02562 * 21 19 17 24 24 H 1.48502 * 109.47405 * 299.99689 * 21 19 17 25 25 C 1.50703 * 109.47581 * 84.99858 * 11 10 8 26 26 C 1.38235 * 120.00292 * 220.00303 * 25 11 10 27 27 C 1.38230 * 119.99899 * 179.97438 * 26 25 11 28 28 C 1.38235 * 120.00326 * 359.95697 * 27 26 25 29 29 C 1.38234 * 119.99814 * 359.97438 * 28 27 26 30 30 C 1.38234 * 119.99503 * 39.97596 * 25 11 10 31 31 H 1.08995 * 109.47202 * 239.99939 * 1 2 3 32 32 H 1.09002 * 109.47120 * 359.97438 * 1 2 3 33 33 H 1.08996 * 109.47376 * 119.99599 * 1 2 3 34 34 H 0.96991 * 120.00277 * 359.97438 * 4 2 1 35 35 H 1.08995 * 109.46969 * 179.97438 * 7 5 4 36 36 H 1.09002 * 109.46879 * 300.00162 * 7 5 4 37 37 H 1.09002 * 109.46690 * 59.99790 * 7 5 4 38 38 H 0.97005 * 119.99889 * 359.97438 * 10 8 5 39 39 H 1.09007 * 109.47213 * 184.99910 * 13 11 10 40 40 H 1.08998 * 109.47120 * 304.99384 * 13 11 10 41 41 H 1.09001 * 109.47226 * 299.99717 * 14 13 11 42 42 H 1.08995 * 109.47539 * 60.00280 * 14 13 11 43 43 H 1.09000 * 109.47541 * 299.99853 * 15 14 13 44 44 H 1.09000 * 109.47281 * 60.00054 * 15 14 13 45 45 H 0.96998 * 119.99754 * 0.02562 * 16 15 14 46 46 H 0.96998 * 119.99415 * 180.02562 * 20 19 17 47 47 H 1.08001 * 119.99730 * 359.97438 * 26 25 11 48 48 H 1.08000 * 120.00376 * 179.97438 * 27 26 25 49 49 H 1.08000 * 120.00616 * 179.72578 * 28 27 26 50 50 H 1.08001 * 120.00299 * 179.97438 * 29 28 27 51 51 H 1.07997 * 120.00455 * 0.02562 * 30 25 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1808 -1.1673 -0.0005 5 6 3.6459 -1.1673 -0.0011 6 1 4.0094 -0.3256 0.5884 7 6 4.1554 -1.0412 -1.4383 8 6 4.1484 -2.4551 0.5989 9 8 3.3604 -3.2904 0.9890 10 7 5.4735 -2.6786 0.7019 11 6 5.9620 -3.9307 1.2846 12 1 5.2900 -4.2467 2.0825 13 6 7.3650 -3.7144 1.8553 14 6 7.2947 -2.7259 3.0209 15 6 8.6976 -2.5101 3.5920 16 7 8.6304 -1.5630 4.7078 17 6 9.7715 -1.2145 5.3798 18 1 10.7210 -1.6374 5.0870 19 6 9.7076 -0.3175 6.4373 20 7 8.5502 0.1975 6.7944 21 14 11.2643 0.1585 7.3534 22 1 12.2227 0.7858 6.4084 23 1 10.9288 1.1228 8.4318 24 1 11.8789 -1.0551 7.9490 25 6 6.0118 -4.9951 0.2189 26 6 5.6257 -6.2888 0.5155 27 6 5.6709 -7.2649 -0.4622 28 6 6.1014 -6.9472 -1.7368 29 6 6.4862 -5.6531 -2.0338 30 6 6.4432 -4.6774 -1.0554 31 1 -0.3633 -0.5138 0.8899 32 1 -0.3633 1.0277 0.0005 33 1 -0.3634 -0.5137 -0.8900 34 1 1.6958 -2.0072 -0.0005 35 1 5.2453 -1.0407 -1.4387 36 1 3.7917 -1.8829 -2.0278 37 1 3.7918 -0.1097 -1.8722 38 1 6.1037 -2.0106 0.3895 39 1 7.7641 -4.6652 2.2089 40 1 8.0157 -3.3139 1.0780 41 1 6.8957 -1.7751 2.6674 42 1 6.6441 -3.1264 3.7983 43 1 9.0962 -3.4610 3.9457 44 1 9.3487 -2.1097 2.8149 45 1 7.7774 -1.1835 4.9710 46 1 8.5057 0.8245 7.5331 47 1 5.2887 -6.5369 1.5112 48 1 5.3696 -8.2758 -0.2304 49 1 6.1410 -7.7108 -2.4995 50 1 6.8230 -5.4049 -3.0295 51 1 6.7449 -3.6667 -1.2872 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001676139991.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:13:28 Heat of formation + Delta-G solvation = -76.453884 kcal Electronic energy + Delta-G solvation = -30273.480601 eV Core-core repulsion = 26171.318532 eV Total energy + Delta-G solvation = -4102.162069 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.66351 -40.59188 -39.69311 -37.77936 -36.47115 -36.02539 -34.30226 -33.17840 -32.00815 -31.71614 -31.59912 -29.73699 -28.34919 -26.10856 -25.25197 -23.87379 -23.45172 -22.24178 -22.10016 -21.45389 -21.26690 -19.17611 -18.88765 -18.03939 -17.68395 -17.31937 -16.74787 -16.54497 -16.49777 -16.20876 -15.92635 -15.70992 -15.47513 -15.30487 -15.15460 -14.70347 -14.66019 -14.30060 -14.19137 -13.97110 -13.72572 -13.56009 -13.42752 -13.27265 -13.21399 -13.00535 -12.90743 -12.70985 -12.64812 -12.58005 -12.23614 -12.09396 -11.92847 -11.87157 -11.74407 -11.65430 -11.08877 -10.98391 -10.93064 -10.29178 -10.22830 -9.76807 -9.59635 -9.01585 -7.96404 -5.25856 0.44624 0.55061 1.44531 1.46193 1.49719 1.55949 1.57465 1.82277 2.40473 2.55199 2.91085 3.37276 3.50611 3.58062 3.86865 3.90839 3.98933 4.01540 4.07921 4.09856 4.13746 4.21085 4.32833 4.41754 4.50400 4.54417 4.61062 4.65090 4.66000 4.72978 4.74647 4.76856 4.83263 4.89048 5.05498 5.07326 5.12120 5.12890 5.18444 5.28826 5.30565 5.40438 5.41635 5.48970 5.60891 5.66340 5.74979 6.15134 6.25925 6.39449 6.47103 7.06974 7.17498 7.31573 8.08844 8.30625 9.27170 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.006827 B = 0.002874 C = 0.002140 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4100.635062 B = 9739.713347 C =13083.226388 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.507 3.493 3 O -0.594 6.594 4 N -0.710 5.710 5 C 0.121 3.879 6 H 0.102 0.898 7 C -0.149 4.149 8 C 0.519 3.481 9 O -0.565 6.565 10 N -0.703 5.703 11 C 0.195 3.805 12 H 0.078 0.922 13 C -0.103 4.103 14 C -0.111 4.111 15 C 0.151 3.849 16 N -0.751 5.751 17 C -0.248 4.248 18 H 0.077 0.923 19 C -0.078 4.078 20 N -0.972 5.972 21 Si 0.976 3.024 22 H -0.275 1.275 23 H -0.296 1.296 24 H -0.277 1.277 25 C -0.100 4.100 26 C -0.123 4.123 27 C -0.128 4.128 28 C -0.128 4.128 29 C -0.127 4.127 30 C -0.112 4.112 31 H 0.105 0.895 32 H 0.092 0.908 33 H 0.115 0.885 34 H 0.416 0.584 35 H 0.091 0.909 36 H 0.070 0.930 37 H 0.065 0.935 38 H 0.415 0.585 39 H 0.086 0.914 40 H 0.089 0.911 41 H 0.061 0.939 42 H 0.048 0.952 43 H 0.018 0.982 44 H 0.026 0.974 45 H 0.372 0.628 46 H 0.251 0.749 47 H 0.119 0.881 48 H 0.136 0.864 49 H 0.140 0.860 50 H 0.141 0.859 51 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.755 -12.315 -24.144 29.955 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.297 3.703 3 O -0.475 6.475 4 N -0.364 5.364 5 C 0.012 3.988 6 H 0.120 0.880 7 C -0.208 4.208 8 C 0.305 3.695 9 O -0.444 6.444 10 N -0.355 5.355 11 C 0.090 3.910 12 H 0.096 0.904 13 C -0.141 4.141 14 C -0.149 4.149 15 C 0.024 3.976 16 N -0.393 5.393 17 C -0.380 4.380 18 H 0.095 0.905 19 C -0.270 4.270 20 N -0.622 5.622 21 Si 0.804 3.196 22 H -0.201 1.201 23 H -0.222 1.222 24 H -0.203 1.203 25 C -0.101 4.101 26 C -0.142 4.142 27 C -0.146 4.146 28 C -0.146 4.146 29 C -0.145 4.145 30 C -0.130 4.130 31 H 0.123 0.877 32 H 0.111 0.889 33 H 0.133 0.867 34 H 0.254 0.746 35 H 0.110 0.890 36 H 0.089 0.911 37 H 0.084 0.916 38 H 0.252 0.748 39 H 0.104 0.896 40 H 0.108 0.892 41 H 0.080 0.920 42 H 0.067 0.933 43 H 0.036 0.964 44 H 0.044 0.956 45 H 0.203 0.797 46 H 0.060 0.940 47 H 0.138 0.862 48 H 0.154 0.846 49 H 0.158 0.842 50 H 0.159 0.841 51 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -12.692 -12.187 -23.824 29.617 hybrid contribution 0.481 0.495 1.080 1.282 sum -12.211 -11.692 -22.744 28.339 Atomic orbital electron populations 1.21929 0.87875 1.06241 1.06413 1.21618 0.92402 0.82408 0.73920 1.90721 1.72040 1.32907 1.51788 1.45860 1.05647 1.09964 1.74917 1.20789 0.82760 0.95597 0.99608 0.88049 1.22069 1.02872 1.03217 0.92593 1.20696 0.82919 0.88055 0.77865 1.90679 1.55982 1.47687 1.50014 1.45887 1.06552 1.20447 1.62602 1.19746 0.95936 0.82216 0.93084 0.90438 1.21702 0.94635 1.00410 0.97371 1.21581 0.96190 0.99616 0.97550 1.20838 0.96060 0.91677 0.88981 1.42642 1.07031 1.52508 1.37121 1.19634 0.88789 1.19854 1.09715 0.90516 1.25624 0.99980 1.00704 1.00698 1.69821 1.25317 1.35502 1.31592 0.85183 0.78919 0.77595 0.77904 1.20139 1.22181 1.20291 1.20153 1.00042 0.94497 0.95454 1.21184 0.99835 0.93114 1.00066 1.21374 0.99893 0.99823 0.93539 1.21472 0.98819 0.97282 0.96986 1.21436 0.99766 0.93243 1.00031 1.21120 0.99259 1.00291 0.92366 0.87675 0.88918 0.86678 0.74582 0.88994 0.91068 0.91597 0.74794 0.89580 0.89213 0.92003 0.93279 0.96354 0.95594 0.79686 0.93999 0.86250 0.84616 0.84170 0.84098 0.84924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.88 10.32 71.24 0.74 -1.14 16 2 C 0.51 10.57 7.90 87.66 0.69 11.26 16 3 O -0.59 -17.91 16.75 -3.02 -0.05 -17.96 16 4 N -0.71 -13.42 4.95 -446.08 -2.21 -15.62 16 5 C 0.12 2.39 2.98 44.24 0.13 2.52 16 6 H 0.10 2.35 7.58 -2.39 -0.02 2.33 16 7 C -0.15 -2.16 9.38 71.98 0.68 -1.49 16 8 C 0.52 11.45 7.18 87.66 0.63 12.08 16 9 O -0.56 -15.93 15.50 -3.02 -0.05 -15.98 16 10 N -0.70 -13.18 3.66 -446.11 -1.63 -14.81 16 11 C 0.19 4.08 2.17 44.25 0.10 4.17 16 12 H 0.08 1.99 7.44 -2.39 -0.02 1.97 16 13 C -0.10 -2.20 4.73 30.59 0.14 -2.06 16 14 C -0.11 -3.34 5.22 30.59 0.16 -3.18 16 15 C 0.15 5.85 6.26 86.38 0.54 6.39 16 16 N -0.75 -38.93 5.60 -343.44 -1.92 -40.85 16 17 C -0.25 -14.11 9.99 84.03 0.84 -13.27 16 18 H 0.08 4.15 7.83 -2.91 -0.02 4.13 16 19 C -0.08 -4.57 5.50 84.86 0.47 -4.10 16 20 N -0.97 -60.84 13.06 21.65 0.28 -60.56 16 21 Si 0.98 46.65 29.55 68.60 2.03 48.68 16 22 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 23 H -0.30 -14.25 7.11 99.48 0.71 -13.54 16 24 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 25 C -0.10 -1.98 4.91 -19.87 -0.10 -2.07 16 26 C -0.12 -2.48 9.67 22.27 0.22 -2.26 16 27 C -0.13 -2.17 10.05 22.27 0.22 -1.95 16 28 C -0.13 -1.90 10.05 22.27 0.22 -1.67 16 29 C -0.13 -1.87 10.05 22.27 0.22 -1.65 16 30 C -0.11 -1.86 9.32 22.27 0.21 -1.65 16 31 H 0.10 0.91 8.14 -2.39 -0.02 0.89 16 32 H 0.09 1.11 8.12 -2.39 -0.02 1.09 16 33 H 0.11 0.70 8.14 -2.39 -0.02 0.68 16 34 H 0.42 6.84 7.79 -92.71 -0.72 6.12 16 35 H 0.09 0.95 7.56 -2.39 -0.02 0.94 16 36 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 37 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 38 H 0.41 5.98 8.02 -92.70 -0.74 5.24 16 39 H 0.09 1.82 8.14 -2.38 -0.02 1.80 16 40 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 41 H 0.06 1.87 7.75 -2.39 -0.02 1.85 16 42 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 43 H 0.02 0.72 8.14 -2.39 -0.02 0.70 16 44 H 0.03 0.98 8.14 -2.39 -0.02 0.96 16 45 H 0.37 20.66 7.67 -92.71 -0.71 19.95 16 46 H 0.25 15.26 8.31 -92.71 -0.77 14.49 16 47 H 0.12 2.34 8.04 -2.91 -0.02 2.32 16 48 H 0.14 1.76 8.06 -2.91 -0.02 1.74 16 49 H 0.14 1.40 8.06 -2.91 -0.02 1.38 16 50 H 0.14 1.41 8.06 -2.91 -0.02 1.39 16 51 H 0.13 1.72 7.72 -2.91 -0.02 1.69 16 Total: -1.00 -79.07 427.35 1.32 -77.75 By element: Atomic # 1 Polarization: 40.66 SS G_CDS: -1.23 Total: 39.43 kcal Atomic # 6 Polarization: -6.18 SS G_CDS: 6.11 Total: -0.07 kcal Atomic # 7 Polarization: -126.36 SS G_CDS: -5.48 Total: -131.85 kcal Atomic # 8 Polarization: -33.85 SS G_CDS: -0.10 Total: -33.94 kcal Atomic # 14 Polarization: 46.65 SS G_CDS: 2.03 Total: 48.68 kcal Total: -79.07 1.32 -77.75 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001676139991.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.297 kcal (2) G-P(sol) polarization free energy of solvation -79.073 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.776 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.322 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.751 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.454 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds