Wall clock time and date at job start Wed Apr 1 2020 05:13:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 O 1.21281 * 120.00149 * 2 1 4 4 N 1.34781 * 119.99679 * 180.02562 * 2 1 3 5 5 C 1.46507 * 119.99840 * 179.97438 * 4 2 1 6 6 H 1.09005 * 109.46913 * 325.00093 * 5 4 2 7 7 C 1.52999 * 109.47022 * 84.99729 * 5 4 2 8 8 C 1.50695 * 109.46857 * 204.99837 * 5 4 2 9 9 O 1.21276 * 120.00241 * 359.97438 * 8 5 4 10 10 N 1.34777 * 119.99779 * 179.97438 * 8 5 4 11 11 C 1.46494 * 120.00188 * 180.02562 * 10 8 5 12 12 H 1.09000 * 109.47081 * 325.00162 * 11 10 8 13 13 C 1.53001 * 109.47302 * 205.00083 * 11 10 8 14 14 C 1.52993 * 109.47184 * 64.99847 * 13 11 10 15 15 C 1.53001 * 109.47184 * 179.97438 * 14 13 11 16 16 N 1.46506 * 109.47289 * 179.97438 * 15 14 13 17 17 C 1.36938 * 120.00086 * 179.97438 * 16 15 14 18 18 H 1.07993 * 119.99982 * 0.02562 * 17 16 15 19 19 C 1.38812 * 119.99750 * 180.02562 * 17 16 15 20 20 N 1.31621 * 119.99525 * 180.02562 * 19 17 16 21 21 Si 1.86800 * 120.00224 * 0.02562 * 19 17 16 22 22 H 1.48499 * 109.47103 * 89.99919 * 21 19 17 23 23 H 1.48496 * 109.47061 * 210.00165 * 21 19 17 24 24 H 1.48496 * 109.46831 * 329.99991 * 21 19 17 25 25 C 1.50703 * 109.47581 * 84.99858 * 11 10 8 26 26 C 1.38235 * 120.00292 * 220.00303 * 25 11 10 27 27 C 1.38230 * 119.99899 * 179.97438 * 26 25 11 28 28 C 1.38235 * 120.00326 * 359.95697 * 27 26 25 29 29 C 1.38234 * 119.99814 * 359.97438 * 28 27 26 30 30 C 1.38234 * 119.99503 * 39.97596 * 25 11 10 31 31 H 1.09002 * 109.47462 * 180.02562 * 1 2 3 32 32 H 1.09008 * 109.47181 * 300.00296 * 1 2 3 33 33 H 1.09004 * 109.47178 * 59.99591 * 1 2 3 34 34 H 0.96997 * 120.00239 * 359.97438 * 4 2 1 35 35 H 1.08998 * 109.46940 * 180.02562 * 7 5 4 36 36 H 1.09001 * 109.47495 * 299.99819 * 7 5 4 37 37 H 1.08995 * 109.47049 * 60.00355 * 7 5 4 38 38 H 0.97005 * 119.99889 * 359.97438 * 10 8 5 39 39 H 1.09007 * 109.47213 * 184.99910 * 13 11 10 40 40 H 1.08998 * 109.47120 * 304.99384 * 13 11 10 41 41 H 1.09001 * 109.47226 * 299.99717 * 14 13 11 42 42 H 1.08995 * 109.47539 * 60.00280 * 14 13 11 43 43 H 1.09000 * 109.47541 * 299.99853 * 15 14 13 44 44 H 1.09000 * 109.47281 * 60.00054 * 15 14 13 45 45 H 0.96998 * 119.99754 * 0.02562 * 16 15 14 46 46 H 0.97004 * 119.99462 * 180.02562 * 20 19 17 47 47 H 1.08001 * 119.99730 * 359.97438 * 26 25 11 48 48 H 1.08000 * 120.00376 * 179.97438 * 27 26 25 49 49 H 1.08000 * 120.00616 * 179.72578 * 28 27 26 50 50 H 1.08001 * 120.00299 * 179.97438 * 29 28 27 51 51 H 1.07997 * 120.00455 * 0.02562 * 30 25 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1808 -1.1673 -0.0005 5 6 3.6458 -1.1673 -0.0011 6 1 4.0089 -0.3253 -0.5905 7 6 4.1564 -1.0419 1.4357 8 6 4.1478 -2.4549 -0.6020 9 8 3.3596 -3.2904 -0.9910 10 7 5.4729 -2.6779 -0.7071 11 6 5.9609 -3.9293 -1.2917 12 1 5.2887 -4.7434 -1.0208 13 6 7.3639 -4.2279 -0.7594 14 6 7.2937 -4.4853 0.7471 15 6 8.6966 -4.7845 1.2793 16 7 8.6294 -5.0304 2.7221 17 6 9.7705 -5.3214 3.4209 18 1 10.7200 -5.3693 2.9086 19 6 9.7068 -5.5549 4.7877 20 7 10.8037 -5.8342 5.4595 21 14 8.0643 -5.4728 5.6737 22 1 7.4301 -6.8156 5.6661 23 1 8.2798 -5.0351 7.0762 24 1 7.1773 -4.5026 4.9830 25 6 6.0106 -3.7971 -2.7921 26 6 5.6240 -4.8559 -3.5925 27 6 5.6691 -4.7344 -4.9687 28 6 6.0999 -3.5539 -5.5447 29 6 6.4851 -2.4947 -4.7444 30 6 6.4422 -2.6169 -3.3680 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3634 0.5139 0.8900 33 1 -0.3634 0.5139 -0.8900 34 1 1.6958 -2.0073 -0.0005 35 1 5.2464 -1.0414 1.4353 36 1 3.7933 -0.1105 1.8704 37 1 3.7933 -1.8838 2.0251 38 1 6.1033 -2.0094 -0.3963 39 1 7.7626 -5.1100 -1.2605 40 1 8.0149 -3.3752 -0.9524 41 1 6.8951 -3.6032 1.2482 42 1 6.6428 -5.3380 0.9401 43 1 9.0949 -5.6668 0.7782 44 1 9.3479 -3.9320 1.0864 45 1 7.7765 -4.9878 3.1821 46 1 10.7590 -5.9977 6.4146 47 1 5.2867 -5.7779 -3.1425 48 1 5.3674 -5.5616 -5.5940 49 1 6.1393 -3.4605 -6.6199 50 1 6.8222 -1.5725 -5.1943 51 1 6.7443 -1.7898 -2.7428 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001676139992.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:13:32 Heat of formation + Delta-G solvation = -72.921836 kcal Electronic energy + Delta-G solvation = -30390.122746 eV Core-core repulsion = 26288.113838 eV Total energy + Delta-G solvation = -4102.008908 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.66854 -40.60249 -39.70770 -37.84658 -36.56199 -36.03141 -34.31672 -33.29804 -32.19137 -31.87314 -31.66303 -29.74338 -28.54847 -26.03488 -25.16839 -23.70670 -23.45890 -22.36046 -22.10066 -21.44364 -21.28256 -19.63508 -18.90394 -18.11072 -17.61163 -17.33937 -16.79132 -16.56941 -16.38677 -16.27189 -15.97424 -15.79023 -15.69390 -15.26957 -14.89015 -14.78236 -14.66081 -14.38825 -14.21598 -14.01773 -13.80908 -13.66217 -13.53873 -13.45069 -13.28176 -13.01496 -12.96264 -12.78995 -12.66309 -12.51970 -12.24671 -11.99844 -11.91730 -11.88477 -11.75860 -11.69581 -11.09386 -10.99077 -10.96380 -10.33354 -10.20482 -9.79846 -9.62230 -9.29516 -8.03378 -5.36885 0.41996 0.51984 1.37223 1.41323 1.44041 1.48731 1.56356 1.81313 2.40389 2.48153 2.88143 3.28334 3.46703 3.51992 3.85064 3.87614 3.90342 3.97592 4.01798 4.07765 4.13407 4.17992 4.29122 4.40248 4.46380 4.52527 4.58725 4.61480 4.64726 4.69912 4.71506 4.73954 4.84521 4.88161 5.05187 5.07019 5.10512 5.13393 5.15555 5.27627 5.29419 5.40803 5.41169 5.57953 5.63485 5.72088 5.75686 6.12333 6.21138 6.39356 6.46328 7.06662 7.08127 7.15702 7.84958 8.03474 9.18303 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.007014 B = 0.003125 C = 0.002289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3990.777096 B = 8957.132734 C =12228.921587 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.509 3.491 3 O -0.593 6.593 4 N -0.710 5.710 5 C 0.126 3.874 6 H 0.112 0.888 7 C -0.157 4.157 8 C 0.519 3.481 9 O -0.563 6.563 10 N -0.704 5.704 11 C 0.196 3.804 12 H 0.085 0.915 13 C -0.106 4.106 14 C -0.115 4.115 15 C 0.152 3.848 16 N -0.761 5.761 17 C -0.236 4.236 18 H 0.055 0.945 19 C -0.067 4.067 20 N -0.985 5.985 21 Si 0.957 3.043 22 H -0.279 1.279 23 H -0.296 1.296 24 H -0.248 1.248 25 C -0.102 4.102 26 C -0.122 4.122 27 C -0.129 4.129 28 C -0.129 4.129 29 C -0.131 4.131 30 C -0.116 4.116 31 H 0.099 0.901 32 H 0.105 0.895 33 H 0.104 0.896 34 H 0.416 0.584 35 H 0.089 0.911 36 H 0.066 0.934 37 H 0.063 0.937 38 H 0.415 0.585 39 H 0.085 0.915 40 H 0.086 0.914 41 H 0.072 0.928 42 H 0.060 0.940 43 H 0.021 0.979 44 H 0.028 0.972 45 H 0.366 0.634 46 H 0.258 0.742 47 H 0.124 0.876 48 H 0.137 0.863 49 H 0.140 0.860 50 H 0.138 0.862 51 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.615 9.934 -21.283 31.251 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.299 3.701 3 O -0.474 6.474 4 N -0.364 5.364 5 C 0.017 3.983 6 H 0.130 0.870 7 C -0.215 4.215 8 C 0.305 3.695 9 O -0.442 6.442 10 N -0.356 5.356 11 C 0.091 3.909 12 H 0.103 0.897 13 C -0.144 4.144 14 C -0.153 4.153 15 C 0.026 3.974 16 N -0.407 5.407 17 C -0.368 4.368 18 H 0.073 0.927 19 C -0.258 4.258 20 N -0.636 5.636 21 Si 0.784 3.216 22 H -0.206 1.206 23 H -0.222 1.222 24 H -0.172 1.172 25 C -0.103 4.103 26 C -0.140 4.140 27 C -0.147 4.147 28 C -0.147 4.147 29 C -0.148 4.148 30 C -0.134 4.134 31 H 0.117 0.883 32 H 0.124 0.876 33 H 0.122 0.878 34 H 0.254 0.746 35 H 0.107 0.893 36 H 0.085 0.915 37 H 0.083 0.917 38 H 0.252 0.748 39 H 0.104 0.896 40 H 0.105 0.895 41 H 0.090 0.910 42 H 0.079 0.921 43 H 0.039 0.961 44 H 0.046 0.954 45 H 0.199 0.801 46 H 0.067 0.933 47 H 0.142 0.858 48 H 0.155 0.845 49 H 0.157 0.843 50 H 0.156 0.844 51 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -20.517 10.030 -21.548 31.399 hybrid contribution -0.187 -0.364 1.060 1.137 sum -20.704 9.666 -20.488 30.689 Atomic orbital electron populations 1.21878 0.88062 1.06185 1.06208 1.21565 0.92298 0.82405 0.73875 1.90707 1.71866 1.32757 1.52060 1.45986 1.05736 1.10018 1.74642 1.20754 0.82710 0.95903 0.98930 0.87045 1.22117 1.02872 1.03116 0.93400 1.20677 0.82920 0.88179 0.77744 1.90685 1.55936 1.47397 1.50174 1.45903 1.06555 1.20901 1.62201 1.19768 0.96132 0.86811 0.88190 0.89656 1.21705 0.94501 1.03910 0.94294 1.21645 0.95830 1.02107 0.95709 1.20825 0.96542 0.97647 0.82380 1.42755 1.05688 1.86552 1.05665 1.19062 0.88123 1.38363 0.91204 0.92682 1.25560 1.00701 1.02224 0.97300 1.69896 1.28931 1.56657 1.08096 0.85375 0.80043 0.78567 0.77601 1.20573 1.22245 1.17241 1.20222 0.99844 0.94951 0.95290 1.21213 0.99669 0.98853 0.94297 1.21399 0.99801 0.98673 0.94792 1.21470 0.98910 0.93374 1.00950 1.21437 0.99955 0.99712 0.93739 1.21132 0.99486 0.97360 0.95467 0.88259 0.87606 0.87767 0.74631 0.89258 0.91509 0.91746 0.74753 0.89635 0.89536 0.90964 0.92126 0.96101 0.95442 0.80112 0.93328 0.85752 0.84486 0.84264 0.84429 0.85180 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.52 10.39 71.23 0.74 -0.78 16 2 C 0.51 9.26 7.90 87.65 0.69 9.95 16 3 O -0.59 -15.75 16.76 -3.03 -0.05 -15.80 16 4 N -0.71 -11.96 4.95 -446.09 -2.21 -14.17 16 5 C 0.13 2.18 2.98 44.24 0.13 2.31 16 6 H 0.11 2.00 7.58 -2.38 -0.02 1.99 16 7 C -0.16 -2.51 9.38 71.98 0.68 -1.83 16 8 C 0.52 10.11 7.18 87.66 0.63 10.73 16 9 O -0.56 -14.41 15.50 -3.02 -0.05 -14.46 16 10 N -0.70 -11.36 3.66 -446.11 -1.63 -12.99 16 11 C 0.20 3.60 2.17 44.25 0.10 3.70 16 12 H 0.09 1.86 7.44 -2.39 -0.02 1.84 16 13 C -0.11 -1.97 4.73 30.59 0.14 -1.82 16 14 C -0.12 -2.83 5.22 30.59 0.16 -2.67 16 15 C 0.15 5.34 6.26 86.38 0.54 5.88 16 16 N -0.76 -34.76 5.41 -343.44 -1.86 -36.62 16 17 C -0.24 -13.50 10.47 84.03 0.88 -12.62 16 18 H 0.06 3.45 8.06 -2.91 -0.02 3.43 16 19 C -0.07 -3.92 5.50 84.86 0.47 -3.46 16 20 N -0.99 -63.35 13.97 21.65 0.30 -63.05 16 21 Si 0.96 45.06 27.74 68.60 1.90 46.97 16 22 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 23 H -0.30 -14.10 7.11 99.48 0.71 -13.40 16 24 H -0.25 -10.34 6.52 99.48 0.65 -9.69 16 25 C -0.10 -1.94 4.91 -19.87 -0.10 -2.04 16 26 C -0.12 -2.36 9.67 22.27 0.22 -2.14 16 27 C -0.13 -2.19 10.05 22.27 0.22 -1.96 16 28 C -0.13 -2.03 10.05 22.27 0.22 -1.81 16 29 C -0.13 -2.10 10.05 22.27 0.22 -1.88 16 30 C -0.12 -2.02 9.32 22.27 0.21 -1.81 16 31 H 0.10 0.49 7.91 -2.39 -0.02 0.47 16 32 H 0.11 0.81 8.14 -2.38 -0.02 0.79 16 33 H 0.10 0.83 8.14 -2.39 -0.02 0.81 16 34 H 0.42 6.21 7.63 -92.71 -0.71 5.51 16 35 H 0.09 1.16 7.57 -2.39 -0.02 1.14 16 36 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 37 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 38 H 0.42 4.92 8.02 -92.70 -0.74 4.18 16 39 H 0.09 1.62 8.14 -2.38 -0.02 1.60 16 40 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 41 H 0.07 1.66 7.75 -2.39 -0.02 1.64 16 42 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 43 H 0.02 0.77 8.14 -2.39 -0.02 0.75 16 44 H 0.03 0.97 8.14 -2.39 -0.02 0.95 16 45 H 0.37 15.81 5.53 -92.71 -0.51 15.30 16 46 H 0.26 15.76 8.31 -92.71 -0.77 14.99 16 47 H 0.12 2.23 8.04 -2.91 -0.02 2.21 16 48 H 0.14 1.76 8.06 -2.91 -0.02 1.74 16 49 H 0.14 1.54 8.06 -2.91 -0.02 1.51 16 50 H 0.14 1.64 8.06 -2.91 -0.02 1.61 16 51 H 0.13 1.84 7.72 -2.91 -0.02 1.81 16 Total: -1.00 -79.69 423.96 1.48 -78.21 By element: Atomic # 1 Polarization: 35.25 SS G_CDS: -1.08 Total: 34.17 kcal Atomic # 6 Polarization: -8.41 SS G_CDS: 6.15 Total: -2.26 kcal Atomic # 7 Polarization: -121.43 SS G_CDS: -5.40 Total: -126.83 kcal Atomic # 8 Polarization: -30.16 SS G_CDS: -0.10 Total: -30.26 kcal Atomic # 14 Polarization: 45.06 SS G_CDS: 1.90 Total: 46.97 kcal Total: -79.69 1.48 -78.21 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001676139992.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.283 kcal (2) G-P(sol) polarization free energy of solvation -79.689 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.205 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.922 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds