Wall clock time and date at job start Wed Apr 1 2020 05:09:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.47394 * 2 1 4 4 O 1.42896 * 109.47188 * 119.99769 * 2 1 3 5 5 C 1.42901 * 114.00317 * 269.99841 * 4 2 1 6 6 C 1.50697 * 109.47212 * 180.02562 * 5 4 2 7 7 C 1.38653 * 120.78815 * 269.71990 * 6 5 4 8 8 C 1.38211 * 119.16059 * 179.75849 * 7 6 5 9 9 N 1.31875 * 120.76179 * 0.52851 * 8 7 6 10 10 C 1.31869 * 121.72589 * 359.74278 * 9 8 7 11 11 C 1.38201 * 120.76582 * 359.97438 * 10 9 8 12 12 C 1.50697 * 109.46958 * 240.00046 * 2 1 3 13 13 O 1.21281 * 119.99718 * 245.00175 * 12 2 1 14 14 N 1.34780 * 120.00365 * 64.99974 * 12 2 1 15 15 C 1.46495 * 120.00145 * 180.02562 * 14 12 2 16 16 C 1.53003 * 109.47273 * 179.97438 * 15 14 12 17 17 H 1.09007 * 109.49452 * 54.93245 * 16 15 14 18 18 C 1.53033 * 109.50202 * 174.99893 * 16 15 14 19 19 C 1.53039 * 109.54135 * 181.31824 * 18 16 15 20 20 C 1.53193 * 109.31182 * 298.63679 * 19 18 16 21 21 N 1.46928 * 108.77558 * 54.63322 * 20 19 18 22 22 C 1.36939 * 120.62948 * 126.36714 * 21 20 19 23 23 H 1.07998 * 119.99697 * 331.91778 * 22 21 20 24 24 C 1.38812 * 119.99948 * 151.91586 * 22 21 20 25 25 N 1.31621 * 119.99722 * 343.21501 * 24 22 21 26 26 Si 1.86797 * 120.00136 * 163.21536 * 24 22 21 27 27 H 1.48497 * 109.47049 * 359.97438 * 26 24 22 28 28 H 1.48497 * 109.47033 * 119.99925 * 26 24 22 29 29 H 1.48503 * 109.47061 * 240.00183 * 26 24 22 30 30 C 1.46924 * 118.73966 * 306.64301 * 21 20 19 31 31 H 1.08998 * 109.46998 * 180.02562 * 1 2 3 32 32 H 1.09006 * 109.46417 * 300.00048 * 1 2 3 33 33 H 1.08995 * 109.47063 * 59.99789 * 1 2 3 34 34 H 1.08999 * 109.46663 * 300.00241 * 5 4 2 35 35 H 1.08998 * 109.46894 * 59.99961 * 5 4 2 36 36 H 1.07990 * 120.41883 * 0.02562 * 7 6 5 37 37 H 1.07991 * 119.61849 * 180.25080 * 8 7 6 38 38 H 1.08000 * 119.61727 * 180.02562 * 10 9 8 39 39 H 1.08003 * 120.41650 * 179.97438 * 11 10 9 40 40 H 0.96999 * 119.99764 * 359.97438 * 14 12 2 41 41 H 1.08999 * 109.47273 * 60.00148 * 15 14 12 42 42 H 1.08998 * 109.47288 * 300.00079 * 15 14 12 43 43 H 1.09005 * 109.45711 * 61.29310 * 18 16 15 44 44 H 1.08997 * 109.46254 * 301.34230 * 18 16 15 45 45 H 1.08999 * 109.49578 * 178.68575 * 19 18 16 46 46 H 1.09001 * 109.52102 * 58.60412 * 19 18 16 47 47 H 1.08996 * 109.58580 * 294.84971 * 20 19 18 48 48 H 1.09000 * 109.70506 * 174.49058 * 20 19 18 49 49 H 0.97006 * 119.99968 * 180.02562 * 25 24 22 50 50 H 1.08996 * 109.58947 * 173.14529 * 30 21 20 51 51 H 1.09007 * 109.58852 * 293.56956 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0063 -0.6736 1.1668 5 6 2.2002 0.1830 2.2941 6 6 2.7015 -0.6281 3.4610 7 6 1.8150 -1.2042 4.3580 8 6 2.3114 -1.9456 5.4135 9 7 3.6109 -2.0989 5.5778 10 6 4.4831 -1.5609 4.7478 11 6 4.0604 -0.8113 3.6664 12 6 2.0323 -0.7104 -1.2305 13 8 2.6529 -1.7467 -1.1214 14 7 1.7919 -0.1942 -2.4521 15 6 2.2797 -0.8851 -3.6482 16 6 1.8745 -0.0952 -4.8944 17 1 2.2330 0.9305 -4.8074 18 6 2.4888 -0.7477 -6.1349 19 6 2.1111 0.0605 -7.3784 20 6 0.5875 0.0629 -7.5377 21 7 -0.0174 0.5541 -6.2920 22 6 -0.9047 1.5970 -6.3112 23 1 -0.8435 2.3437 -7.0890 24 6 -1.8827 1.6943 -5.3309 25 7 -2.1785 0.6472 -4.5903 26 14 -2.7788 3.3112 -5.0629 27 1 -2.2647 4.3262 -6.0171 28 1 -4.2336 3.1136 -5.2858 29 1 -2.5501 3.7793 -3.6723 30 6 0.3524 -0.0909 -5.0248 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3632 0.5139 0.8901 33 1 -0.3633 0.5138 -0.8899 34 1 2.9320 0.9513 2.0449 35 1 1.2539 0.6547 2.5588 36 1 0.7499 -1.0788 4.2310 37 1 1.6275 -2.4010 6.1142 38 1 5.5398 -1.7086 4.9145 39 1 4.7797 -0.3730 2.9904 40 1 1.2952 0.6344 -2.5392 41 1 1.8446 -1.8835 -3.6940 42 1 3.3659 -0.9638 -3.6047 43 1 2.1111 -1.7653 -6.2346 44 1 3.5737 -0.7717 -6.0330 45 1 2.5682 -0.3915 -8.2587 46 1 2.4671 1.0849 -7.2690 47 1 0.2395 -0.9504 -7.7380 48 1 0.3053 0.7162 -8.3633 49 1 -2.8622 0.7151 -3.9055 50 1 -0.0827 0.4623 -4.1926 51 1 -0.0152 -1.1171 -5.0161 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001690388838.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:09:56 Heat of formation + Delta-G solvation = -34.948210 kcal Electronic energy + Delta-G solvation = -30415.496750 eV Core-core repulsion = 26315.134502 eV Total energy + Delta-G solvation = -4100.362248 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -40.48176 -39.82558 -38.16516 -37.44887 -34.66403 -33.71537 -33.13093 -31.68067 -31.48827 -30.48166 -29.78657 -27.14732 -25.83179 -25.33419 -23.80407 -23.69545 -22.28804 -22.17365 -20.90600 -20.21327 -19.06904 -17.65343 -17.25698 -16.83238 -16.74171 -16.48782 -15.87616 -15.60288 -15.25183 -15.09930 -14.53293 -14.30680 -14.10610 -14.05495 -13.89831 -13.66240 -13.53057 -13.17281 -12.94388 -12.86908 -12.55280 -12.35743 -12.23440 -12.20176 -12.04562 -11.78887 -11.42293 -11.25894 -11.08084 -10.80479 -10.53786 -10.27071 -10.23030 -10.16678 -10.00859 -9.97875 -9.77263 -9.71719 -9.49734 -9.42286 -9.34816 -8.77636 -8.56281 -6.73592 -5.87144 -3.29778 0.84618 0.86642 2.77334 2.92688 3.27407 3.37491 3.39433 3.53109 3.90286 4.19160 4.39009 4.40792 4.43089 4.71154 4.76460 4.83053 4.85865 4.93597 5.03636 5.07819 5.11609 5.27152 5.33213 5.49961 5.50005 5.52937 5.54658 5.59993 5.61641 5.66695 5.75970 5.93051 6.01514 6.06642 6.12269 6.24418 6.26019 6.36664 6.39975 6.45531 6.61018 6.66267 6.76162 6.80896 6.84652 6.96730 7.24513 7.53616 7.67924 7.71743 7.73597 8.36174 8.41593 9.13063 9.76211 10.34011 11.20739 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.013933 B = 0.002275 C = 0.002018 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2009.181051 B =12304.384839 C =13871.582823 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.071 3.929 3 H 0.086 0.914 4 O -0.349 6.349 5 C 0.097 3.903 6 C -0.042 4.042 7 C -0.151 4.151 8 C 0.095 3.905 9 N -0.484 5.484 10 C 0.095 3.905 11 C -0.150 4.150 12 C 0.513 3.487 13 O -0.529 6.529 14 N -0.716 5.716 15 C 0.132 3.868 16 C -0.127 4.127 17 H 0.069 0.931 18 C -0.100 4.100 19 C -0.133 4.133 20 C 0.143 3.857 21 N -0.592 5.592 22 C -0.250 4.250 23 H 0.065 0.935 24 C 0.001 3.999 25 N -0.901 5.901 26 Si 0.899 3.101 27 H -0.278 1.278 28 H -0.290 1.290 29 H -0.289 1.289 30 C 0.179 3.821 31 H 0.072 0.928 32 H 0.066 0.934 33 H 0.082 0.918 34 H 0.064 0.936 35 H 0.066 0.934 36 H 0.137 0.863 37 H 0.157 0.843 38 H 0.157 0.843 39 H 0.137 0.863 40 H 0.405 0.595 41 H 0.065 0.935 42 H 0.059 0.941 43 H 0.057 0.943 44 H 0.047 0.953 45 H 0.051 0.949 46 H 0.057 0.943 47 H 0.017 0.983 48 H 0.052 0.948 49 H 0.253 0.747 50 H 0.087 0.913 51 H 0.019 0.981 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.816 0.560 13.722 16.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.010 3.990 3 H 0.104 0.896 4 O -0.267 6.267 5 C 0.020 3.980 6 C -0.050 4.050 7 C -0.171 4.171 8 C -0.062 4.062 9 N -0.193 5.193 10 C -0.062 4.062 11 C -0.170 4.170 12 C 0.298 3.702 13 O -0.405 6.405 14 N -0.369 5.369 15 C 0.009 3.991 16 C -0.148 4.148 17 H 0.088 0.912 18 C -0.139 4.139 19 C -0.172 4.172 20 C 0.016 3.984 21 N -0.315 5.315 22 C -0.380 4.380 23 H 0.083 0.917 24 C -0.197 4.197 25 N -0.545 5.545 26 Si 0.729 3.271 27 H -0.203 1.203 28 H -0.217 1.217 29 H -0.216 1.216 30 C 0.053 3.947 31 H 0.091 0.909 32 H 0.085 0.915 33 H 0.101 0.899 34 H 0.082 0.918 35 H 0.084 0.916 36 H 0.155 0.845 37 H 0.174 0.826 38 H 0.174 0.826 39 H 0.154 0.846 40 H 0.240 0.760 41 H 0.083 0.917 42 H 0.077 0.923 43 H 0.076 0.924 44 H 0.066 0.934 45 H 0.070 0.930 46 H 0.076 0.924 47 H 0.035 0.965 48 H 0.071 0.929 49 H 0.063 0.937 50 H 0.105 0.895 51 H 0.037 0.963 Dipole moment (debyes) X Y Z Total from point charges 10.460 -0.887 14.608 17.988 hybrid contribution -1.202 1.957 -0.646 2.386 sum 9.258 1.070 13.962 16.787 Atomic orbital electron populations 1.22250 0.92867 1.04243 1.03610 1.21951 0.95566 0.96135 0.85322 0.89625 1.88117 1.86649 1.33493 1.18463 1.21415 1.00168 0.91652 0.84729 1.19985 0.93677 0.96648 0.94699 1.22108 1.01102 0.98154 0.95725 1.22777 0.91959 0.95353 0.96109 1.67667 1.03407 1.19636 1.28606 1.22774 0.99706 0.93158 0.90517 1.22113 0.95886 0.99892 0.99060 1.20216 0.80050 0.85633 0.84322 1.90700 1.40056 1.23185 1.86592 1.45964 1.57481 1.28123 1.05348 1.21397 0.98157 0.96361 0.83219 1.22069 1.01730 0.98717 0.92281 0.91246 1.21334 0.98565 0.99166 0.94792 1.21987 0.99139 0.99651 0.96428 1.20936 0.90414 0.96907 0.90095 1.44027 1.49091 1.38165 1.00182 1.19240 1.06719 0.99927 1.12072 0.91681 1.25042 0.96727 0.97083 1.00845 1.70062 1.32925 1.27093 1.24470 0.86272 0.79441 0.83692 0.77693 1.20302 1.21726 1.21582 1.20711 0.87067 0.96560 0.90388 0.90893 0.91475 0.89902 0.91779 0.91607 0.84518 0.82552 0.82552 0.84558 0.75965 0.91651 0.92291 0.92437 0.93389 0.93046 0.92434 0.96471 0.92900 0.93729 0.89498 0.96332 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.01 9.48 37.16 0.35 -1.66 16 2 C 0.07 0.89 3.13 -27.88 -0.09 0.80 16 3 H 0.09 0.83 7.79 -51.93 -0.40 0.42 16 4 O -0.35 -4.70 9.51 -55.09 -0.52 -5.22 16 5 C 0.10 0.93 5.92 36.00 0.21 1.14 16 6 C -0.04 -0.42 5.55 -104.32 -0.58 -1.00 16 7 C -0.15 -1.40 9.82 -39.44 -0.39 -1.79 16 8 C 0.09 0.89 11.18 -17.54 -0.20 0.70 16 9 N -0.48 -5.30 10.36 -13.25 -0.14 -5.44 16 10 C 0.10 0.91 11.18 -17.55 -0.20 0.71 16 11 C -0.15 -1.43 9.82 -39.44 -0.39 -1.82 16 12 C 0.51 8.20 7.18 -10.99 -0.08 8.12 16 13 O -0.53 -10.56 16.51 -14.30 -0.24 -10.79 16 14 N -0.72 -10.90 5.29 -60.30 -0.32 -11.22 16 15 C 0.13 2.13 5.07 -4.04 -0.02 2.11 16 16 C -0.13 -2.19 2.36 -90.72 -0.21 -2.40 16 17 H 0.07 1.21 8.14 -51.92 -0.42 0.79 16 18 C -0.10 -1.59 5.17 -26.69 -0.14 -1.73 16 19 C -0.13 -2.19 6.08 -26.61 -0.16 -2.35 16 20 C 0.14 2.87 6.52 -3.71 -0.02 2.85 16 21 N -0.59 -13.99 3.00 -172.58 -0.52 -14.51 16 22 C -0.25 -6.48 9.58 -15.06 -0.14 -6.63 16 23 H 0.07 1.68 7.88 -52.49 -0.41 1.27 16 24 C 0.00 0.04 4.92 -17.43 -0.09 -0.05 16 25 N -0.90 -24.36 11.20 55.49 0.62 -23.74 16 26 Si 0.90 20.38 29.59 -169.99 -5.03 15.35 16 27 H -0.28 -6.23 7.11 56.52 0.40 -5.82 16 28 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 29 H -0.29 -6.45 7.11 56.52 0.40 -6.05 16 30 C 0.18 3.89 4.36 -3.93 -0.02 3.87 16 31 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 32 H 0.07 0.63 7.87 -51.93 -0.41 0.22 16 33 H 0.08 1.01 7.92 -51.93 -0.41 0.60 16 34 H 0.06 0.51 8.04 -51.93 -0.42 0.09 16 35 H 0.07 0.51 7.83 -51.93 -0.41 0.10 16 36 H 0.14 1.00 8.06 -52.49 -0.42 0.57 16 37 H 0.16 1.04 8.06 -52.49 -0.42 0.62 16 38 H 0.16 1.07 8.06 -52.49 -0.42 0.65 16 39 H 0.14 1.07 8.06 -52.48 -0.42 0.65 16 40 H 0.40 5.79 7.47 -40.82 -0.31 5.48 16 41 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 42 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 43 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 44 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 45 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 46 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 47 H 0.02 0.36 8.14 -51.93 -0.42 -0.07 16 48 H 0.05 1.05 7.93 -51.93 -0.41 0.63 16 49 H 0.25 6.61 8.31 -40.82 -0.34 6.27 16 50 H 0.09 2.03 5.26 -51.93 -0.27 1.76 16 51 H 0.02 0.45 8.14 -51.92 -0.42 0.02 16 LS Contribution 414.06 15.07 6.24 6.24 Total: -1.00 -32.70 414.06 -10.56 -43.26 By element: Atomic # 1 Polarization: 13.70 SS G_CDS: -8.51 Total: 5.19 kcal Atomic # 6 Polarization: 3.03 SS G_CDS: -2.15 Total: 0.88 kcal Atomic # 7 Polarization: -54.55 SS G_CDS: -0.35 Total: -54.90 kcal Atomic # 8 Polarization: -15.25 SS G_CDS: -0.76 Total: -16.01 kcal Atomic # 14 Polarization: 20.38 SS G_CDS: -5.03 Total: 15.35 kcal Total LS contribution 6.24 Total: 6.24 kcal Total: -32.70 -10.56 -43.26 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690388838.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.311 kcal (2) G-P(sol) polarization free energy of solvation -32.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.561 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.259 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.948 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds