Wall clock time and date at job start Wed Apr 1 2020 05:09:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.47394 * 2 1 4 4 O 1.42896 * 109.47188 * 119.99769 * 2 1 3 5 5 C 1.42901 * 114.00317 * 269.99841 * 4 2 1 6 6 C 1.50697 * 109.47212 * 180.02562 * 5 4 2 7 7 C 1.38653 * 120.78815 * 269.71990 * 6 5 4 8 8 C 1.38211 * 119.16059 * 179.75849 * 7 6 5 9 9 N 1.31875 * 120.76179 * 0.52851 * 8 7 6 10 10 C 1.31869 * 121.72589 * 359.74278 * 9 8 7 11 11 C 1.38201 * 120.76582 * 359.97438 * 10 9 8 12 12 C 1.50697 * 109.46958 * 240.00046 * 2 1 3 13 13 O 1.21281 * 119.99718 * 245.00175 * 12 2 1 14 14 N 1.34780 * 120.00365 * 64.99974 * 12 2 1 15 15 C 1.46495 * 120.00145 * 180.02562 * 14 12 2 16 16 C 1.53003 * 109.47273 * 179.97438 * 15 14 12 17 17 H 1.09007 * 109.49452 * 54.93245 * 16 15 14 18 18 C 1.53033 * 109.50202 * 174.99893 * 16 15 14 19 19 C 1.53039 * 109.54135 * 181.31824 * 18 16 15 20 20 C 1.53193 * 109.31182 * 298.63679 * 19 18 16 21 21 N 1.46928 * 108.77558 * 54.63322 * 20 19 18 22 22 C 1.36939 * 120.62948 * 126.36714 * 21 20 19 23 23 H 1.07998 * 119.99697 * 331.91778 * 22 21 20 24 24 C 1.38812 * 119.99948 * 151.91586 * 22 21 20 25 25 N 1.31621 * 119.99722 * 343.21501 * 24 22 21 26 26 Si 1.86797 * 120.00136 * 163.21536 * 24 22 21 27 27 H 1.48497 * 109.47049 * 359.97438 * 26 24 22 28 28 H 1.48497 * 109.47033 * 119.99925 * 26 24 22 29 29 H 1.48503 * 109.47061 * 240.00183 * 26 24 22 30 30 C 1.46924 * 118.73966 * 306.64301 * 21 20 19 31 31 H 1.08998 * 109.46998 * 180.02562 * 1 2 3 32 32 H 1.09006 * 109.46417 * 300.00048 * 1 2 3 33 33 H 1.08995 * 109.47063 * 59.99789 * 1 2 3 34 34 H 1.08999 * 109.46663 * 300.00241 * 5 4 2 35 35 H 1.08998 * 109.46894 * 59.99961 * 5 4 2 36 36 H 1.07990 * 120.41883 * 0.02562 * 7 6 5 37 37 H 1.07991 * 119.61849 * 180.25080 * 8 7 6 38 38 H 1.08000 * 119.61727 * 180.02562 * 10 9 8 39 39 H 1.08003 * 120.41650 * 179.97438 * 11 10 9 40 40 H 0.96999 * 119.99764 * 359.97438 * 14 12 2 41 41 H 1.08999 * 109.47273 * 60.00148 * 15 14 12 42 42 H 1.08998 * 109.47288 * 300.00079 * 15 14 12 43 43 H 1.09005 * 109.45711 * 61.29310 * 18 16 15 44 44 H 1.08997 * 109.46254 * 301.34230 * 18 16 15 45 45 H 1.08999 * 109.49578 * 178.68575 * 19 18 16 46 46 H 1.09001 * 109.52102 * 58.60412 * 19 18 16 47 47 H 1.08996 * 109.58580 * 294.84971 * 20 19 18 48 48 H 1.09000 * 109.70506 * 174.49058 * 20 19 18 49 49 H 0.97006 * 119.99968 * 180.02562 * 25 24 22 50 50 H 1.08996 * 109.58947 * 173.14529 * 30 21 20 51 51 H 1.09007 * 109.58852 * 293.56956 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0063 -0.6736 1.1668 5 6 2.2002 0.1830 2.2941 6 6 2.7015 -0.6281 3.4610 7 6 1.8150 -1.2042 4.3580 8 6 2.3114 -1.9456 5.4135 9 7 3.6109 -2.0989 5.5778 10 6 4.4831 -1.5609 4.7478 11 6 4.0604 -0.8113 3.6664 12 6 2.0323 -0.7104 -1.2305 13 8 2.6529 -1.7467 -1.1214 14 7 1.7919 -0.1942 -2.4521 15 6 2.2797 -0.8851 -3.6482 16 6 1.8745 -0.0952 -4.8944 17 1 2.2330 0.9305 -4.8074 18 6 2.4888 -0.7477 -6.1349 19 6 2.1111 0.0605 -7.3784 20 6 0.5875 0.0629 -7.5377 21 7 -0.0174 0.5541 -6.2920 22 6 -0.9047 1.5970 -6.3112 23 1 -0.8435 2.3437 -7.0890 24 6 -1.8827 1.6943 -5.3309 25 7 -2.1785 0.6472 -4.5903 26 14 -2.7788 3.3112 -5.0629 27 1 -2.2647 4.3262 -6.0171 28 1 -4.2336 3.1136 -5.2858 29 1 -2.5501 3.7793 -3.6723 30 6 0.3524 -0.0909 -5.0248 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3632 0.5139 0.8901 33 1 -0.3633 0.5138 -0.8899 34 1 2.9320 0.9513 2.0449 35 1 1.2539 0.6547 2.5588 36 1 0.7499 -1.0788 4.2310 37 1 1.6275 -2.4010 6.1142 38 1 5.5398 -1.7086 4.9145 39 1 4.7797 -0.3730 2.9904 40 1 1.2952 0.6344 -2.5392 41 1 1.8446 -1.8835 -3.6940 42 1 3.3659 -0.9638 -3.6047 43 1 2.1111 -1.7653 -6.2346 44 1 3.5737 -0.7717 -6.0330 45 1 2.5682 -0.3915 -8.2587 46 1 2.4671 1.0849 -7.2690 47 1 0.2395 -0.9504 -7.7380 48 1 0.3053 0.7162 -8.3633 49 1 -2.8622 0.7151 -3.9055 50 1 -0.0827 0.4623 -4.1926 51 1 -0.0152 -1.1171 -5.0161 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001690388838.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:09:55 Heat of formation + Delta-G solvation = -54.511614 kcal Electronic energy + Delta-G solvation = -30416.345083 eV Core-core repulsion = 26315.134502 eV Total energy + Delta-G solvation = -4101.210581 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.27925 -40.94599 -39.50692 -38.63127 -36.13822 -34.85979 -34.45241 -32.93246 -32.16291 -31.93211 -31.29519 -27.89876 -27.35171 -27.00073 -24.89005 -24.42594 -23.82875 -22.98534 -22.36389 -21.48835 -20.55265 -18.80443 -18.50661 -18.18752 -17.51853 -17.41586 -16.93857 -16.72545 -16.52427 -16.29228 -15.86591 -15.64359 -15.46563 -15.17434 -14.91579 -14.79046 -14.56388 -14.51778 -14.23096 -14.02339 -13.84227 -13.78415 -13.52555 -13.33043 -12.99499 -12.89638 -12.87717 -12.55011 -12.51754 -12.31541 -12.19519 -11.95035 -11.77848 -11.55075 -11.30663 -11.10093 -11.06437 -10.77178 -10.53408 -10.51235 -10.48655 -10.10402 -10.08753 -8.63149 -7.83169 -5.29330 0.11827 0.18339 1.47872 1.52258 1.53779 1.61390 1.89083 2.54082 2.69593 3.07402 3.28894 3.55286 3.58555 3.64614 3.74062 3.76340 3.91858 4.00616 4.01811 4.09881 4.10507 4.15416 4.18751 4.36138 4.37883 4.41480 4.53651 4.64960 4.65009 4.68256 4.74524 4.81468 4.87220 4.88920 4.90017 4.97157 5.04908 5.16234 5.17157 5.23908 5.33368 5.35884 5.39833 5.47807 5.57421 5.70028 5.73739 5.79938 5.96865 6.42903 6.51505 6.98202 7.17701 7.18928 7.89040 8.42099 9.22367 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.013933 B = 0.002275 C = 0.002018 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2009.181051 B =12304.384839 C =13871.582823 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.079 3.921 3 H 0.121 0.879 4 O -0.377 6.377 5 C 0.093 3.907 6 C -0.059 4.059 7 C -0.156 4.156 8 C 0.084 3.916 9 N -0.510 5.510 10 C 0.084 3.916 11 C -0.158 4.158 12 C 0.509 3.491 13 O -0.575 6.575 14 N -0.712 5.712 15 C 0.139 3.861 16 C -0.110 4.110 17 H 0.074 0.926 18 C -0.100 4.100 19 C -0.121 4.121 20 C 0.135 3.865 21 N -0.611 5.611 22 C -0.263 4.263 23 H 0.063 0.937 24 C -0.044 4.044 25 N -0.929 5.929 26 Si 0.962 3.038 27 H -0.272 1.272 28 H -0.299 1.299 29 H -0.281 1.281 30 C 0.189 3.811 31 H 0.050 0.950 32 H 0.095 0.905 33 H 0.074 0.926 34 H 0.082 0.918 35 H 0.087 0.913 36 H 0.155 0.845 37 H 0.179 0.821 38 H 0.178 0.822 39 H 0.150 0.850 40 H 0.410 0.590 41 H 0.046 0.954 42 H 0.074 0.926 43 H 0.052 0.948 44 H 0.079 0.921 45 H 0.081 0.919 46 H 0.059 0.941 47 H 0.008 0.992 48 H 0.051 0.949 49 H 0.250 0.750 50 H 0.067 0.933 51 H -0.016 1.016 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.875 2.203 14.068 17.918 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.018 3.982 3 H 0.139 0.861 4 O -0.296 6.296 5 C 0.017 3.983 6 C -0.068 4.068 7 C -0.176 4.176 8 C -0.072 4.072 9 N -0.220 5.220 10 C -0.072 4.072 11 C -0.178 4.178 12 C 0.295 3.705 13 O -0.454 6.454 14 N -0.364 5.364 15 C 0.015 3.985 16 C -0.131 4.131 17 H 0.093 0.907 18 C -0.138 4.138 19 C -0.160 4.160 20 C 0.009 3.991 21 N -0.334 5.334 22 C -0.393 4.393 23 H 0.080 0.920 24 C -0.240 4.240 25 N -0.575 5.575 26 Si 0.790 3.210 27 H -0.197 1.197 28 H -0.227 1.227 29 H -0.207 1.207 30 C 0.063 3.937 31 H 0.070 0.930 32 H 0.114 0.886 33 H 0.093 0.907 34 H 0.100 0.900 35 H 0.105 0.895 36 H 0.172 0.828 37 H 0.196 0.804 38 H 0.195 0.805 39 H 0.168 0.832 40 H 0.247 0.753 41 H 0.065 0.935 42 H 0.092 0.908 43 H 0.071 0.929 44 H 0.098 0.902 45 H 0.100 0.900 46 H 0.077 0.923 47 H 0.026 0.974 48 H 0.069 0.931 49 H 0.060 0.940 50 H 0.086 0.914 51 H 0.002 0.998 Dipole moment (debyes) X Y Z Total from point charges 11.533 0.778 14.937 18.887 hybrid contribution -1.564 1.393 -0.801 2.242 sum 9.969 2.171 14.136 17.433 Atomic orbital electron populations 1.22207 0.92399 1.03152 1.04634 1.21930 0.95650 0.97011 0.83634 0.86149 1.88082 1.86834 1.35286 1.19420 1.21640 1.01848 0.91431 0.83337 1.20247 0.94143 0.97186 0.95190 1.22363 1.02037 0.97740 0.95445 1.23201 0.91966 0.95361 0.96679 1.67694 1.04272 1.20518 1.29485 1.23166 1.00677 0.92947 0.90399 1.22346 0.96242 0.99916 0.99298 1.20934 0.79054 0.85127 0.85342 1.90671 1.42242 1.25214 1.87258 1.45962 1.57116 1.28101 1.05227 1.21270 0.98781 0.95290 0.83170 1.21829 0.98148 0.99390 0.93705 0.90747 1.21364 1.00354 0.98504 0.93580 1.21864 0.95935 1.00214 0.97992 1.21115 0.93066 0.96059 0.88813 1.44311 1.49244 1.38021 1.01794 1.19500 1.07187 1.00563 1.12030 0.91968 1.25708 0.97624 0.99789 1.00834 1.70205 1.33518 1.28756 1.24980 0.85306 0.77492 0.80299 0.77893 1.19671 1.22650 1.20687 1.20507 0.90035 0.93883 0.89290 0.93046 0.88588 0.90670 0.90027 0.89469 0.82767 0.80420 0.80543 0.83249 0.75330 0.93518 0.90816 0.92944 0.90198 0.90019 0.92268 0.97433 0.93054 0.94050 0.91426 0.99821 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.71 9.48 71.98 0.68 -3.03 16 2 C 0.08 1.84 3.13 29.85 0.09 1.94 16 3 H 0.12 1.97 7.79 -2.39 -0.02 1.95 16 4 O -0.38 -9.66 9.51 -129.99 -1.24 -10.89 16 5 C 0.09 1.58 5.92 71.23 0.42 2.00 16 6 C -0.06 -1.12 5.55 -19.67 -0.11 -1.23 16 7 C -0.16 -2.71 9.82 22.36 0.22 -2.49 16 8 C 0.08 1.52 11.18 84.68 0.95 2.46 16 9 N -0.51 -10.90 10.36 -195.85 -2.03 -12.93 16 10 C 0.08 1.56 11.18 84.68 0.95 2.50 16 11 C -0.16 -2.87 9.82 22.36 0.22 -2.65 16 12 C 0.51 16.09 7.18 87.66 0.63 16.72 16 13 O -0.57 -23.14 16.51 15.96 0.26 -22.87 16 14 N -0.71 -21.39 5.29 -463.07 -2.45 -23.84 16 15 C 0.14 4.40 5.07 86.38 0.44 4.84 16 16 C -0.11 -3.69 2.36 -10.86 -0.03 -3.72 16 17 H 0.07 2.46 8.14 -2.38 -0.02 2.44 16 18 C -0.10 -2.96 5.17 30.62 0.16 -2.80 16 19 C -0.12 -3.71 6.08 30.67 0.19 -3.52 16 20 C 0.13 5.37 6.52 86.36 0.56 5.94 16 21 N -0.61 -29.05 3.00 -699.92 -2.10 -31.15 16 22 C -0.26 -13.69 9.58 84.03 0.81 -12.89 16 23 H 0.06 3.21 7.88 -2.91 -0.02 3.19 16 24 C -0.04 -2.28 4.92 84.86 0.42 -1.87 16 25 N -0.93 -51.15 11.20 21.65 0.24 -50.91 16 26 Si 0.96 41.83 29.59 68.60 2.03 43.86 16 27 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 28 H -0.30 -13.37 7.11 99.48 0.71 -12.66 16 29 H -0.28 -11.74 7.11 99.48 0.71 -11.03 16 30 C 0.19 8.35 4.36 86.22 0.38 8.72 16 31 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 32 H 0.10 1.57 7.87 -2.38 -0.02 1.55 16 33 H 0.07 1.79 7.92 -2.39 -0.02 1.77 16 34 H 0.08 1.08 8.04 -2.39 -0.02 1.06 16 35 H 0.09 1.08 7.83 -2.39 -0.02 1.06 16 36 H 0.15 1.98 8.06 -2.92 -0.02 1.96 16 37 H 0.18 2.17 8.06 -2.92 -0.02 2.14 16 38 H 0.18 2.26 8.06 -2.91 -0.02 2.24 16 39 H 0.15 2.17 8.06 -2.91 -0.02 2.14 16 40 H 0.41 11.52 7.47 -92.71 -0.69 10.83 16 41 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 42 H 0.07 2.15 8.14 -2.39 -0.02 2.14 16 43 H 0.05 1.62 8.14 -2.38 -0.02 1.60 16 44 H 0.08 1.92 8.14 -2.39 -0.02 1.91 16 45 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 46 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 47 H 0.01 0.32 8.14 -2.39 -0.02 0.30 16 48 H 0.05 2.01 7.93 -2.39 -0.02 1.99 16 49 H 0.25 13.31 8.31 -92.70 -0.77 12.54 16 50 H 0.07 3.23 5.26 -2.39 -0.01 3.22 16 51 H -0.02 -0.82 8.14 -2.38 -0.02 -0.84 16 Total: -1.00 -72.17 414.06 1.91 -70.26 By element: Atomic # 1 Polarization: 27.32 SS G_CDS: 0.22 Total: 27.54 kcal Atomic # 6 Polarization: 3.97 SS G_CDS: 6.97 Total: 10.94 kcal Atomic # 7 Polarization: -112.49 SS G_CDS: -6.34 Total: -118.82 kcal Atomic # 8 Polarization: -32.80 SS G_CDS: -0.97 Total: -33.77 kcal Atomic # 14 Polarization: 41.83 SS G_CDS: 2.03 Total: 43.86 kcal Total: -72.17 1.91 -70.26 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690388838.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.746 kcal (2) G-P(sol) polarization free energy of solvation -72.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.422 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.911 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.258 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.512 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds