Wall clock time and date at job start Wed Apr 1 2020 05:10:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08996 * 109.47682 * 2 1 4 4 O 1.42904 * 109.46824 * 239.99750 * 2 1 3 5 5 C 1.42900 * 113.99665 * 90.00443 * 4 2 1 6 6 C 1.50698 * 109.47206 * 179.97438 * 5 4 2 7 7 C 1.38657 * 120.79262 * 269.71900 * 6 5 4 8 8 C 1.38204 * 119.16165 * 179.75197 * 7 6 5 9 9 N 1.31864 * 120.76533 * 0.53534 * 8 7 6 10 10 C 1.31869 * 121.72854 * 359.73346 * 9 8 7 11 11 C 1.38200 * 120.76078 * 359.97438 * 10 9 8 12 12 C 1.50697 * 109.47064 * 120.00596 * 2 1 3 13 13 O 1.21284 * 120.00489 * 119.99930 * 12 2 1 14 14 N 1.34780 * 119.99543 * 299.99130 * 12 2 1 15 15 C 1.46509 * 119.99869 * 179.97438 * 14 12 2 16 16 C 1.52995 * 109.46883 * 180.02562 * 15 14 12 17 17 H 1.08992 * 109.49846 * 54.93821 * 16 15 14 18 18 C 1.53047 * 109.49647 * 175.00343 * 16 15 14 19 19 C 1.53034 * 109.53714 * 181.34656 * 18 16 15 20 20 C 1.53188 * 109.31564 * 298.63574 * 19 18 16 21 21 N 1.46928 * 108.77834 * 54.63496 * 20 19 18 22 22 C 1.36936 * 120.62964 * 126.36680 * 21 20 19 23 23 H 1.07994 * 120.00480 * 331.91792 * 22 21 20 24 24 C 1.38812 * 119.99772 * 151.91615 * 22 21 20 25 25 N 1.31621 * 119.99722 * 343.21919 * 24 22 21 26 26 Si 1.86797 * 120.00136 * 163.21954 * 24 22 21 27 27 H 1.48497 * 109.47343 * 89.99726 * 26 24 22 28 28 H 1.48499 * 109.47138 * 210.00291 * 26 24 22 29 29 H 1.48506 * 109.47011 * 329.99973 * 26 24 22 30 30 C 1.46927 * 118.73611 * 306.64616 * 21 20 19 31 31 H 1.09000 * 109.47235 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.46691 * 299.99857 * 1 2 3 33 33 H 1.08999 * 109.46943 * 59.99602 * 1 2 3 34 34 H 1.08998 * 109.47000 * 299.99724 * 5 4 2 35 35 H 1.08993 * 109.47314 * 59.99709 * 5 4 2 36 36 H 1.08001 * 120.41346 * 0.02562 * 7 6 5 37 37 H 1.08002 * 119.61380 * 180.25029 * 8 7 6 38 38 H 1.07998 * 119.61683 * 179.97438 * 10 9 8 39 39 H 1.08006 * 120.41502 * 179.97438 * 11 10 9 40 40 H 0.96994 * 120.00436 * 0.02562 * 14 12 2 41 41 H 1.09004 * 109.46818 * 60.00403 * 15 14 12 42 42 H 1.08996 * 109.46843 * 300.00584 * 15 14 12 43 43 H 1.09004 * 109.46002 * 61.32833 * 18 16 15 44 44 H 1.08998 * 109.44704 * 301.36256 * 18 16 15 45 45 H 1.08999 * 109.49819 * 178.68020 * 19 18 16 46 46 H 1.09001 * 109.52388 * 58.60116 * 19 18 16 47 47 H 1.09003 * 109.58509 * 294.84723 * 20 19 18 48 48 H 1.09000 * 109.70725 * 174.49531 * 20 19 18 49 49 H 0.97006 * 119.99968 * 180.02562 * 25 24 22 50 50 H 1.08995 * 109.58687 * 173.14018 * 30 21 20 51 51 H 1.08998 * 109.58568 * 293.56704 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 8 2.0063 -0.6737 -1.1668 5 6 2.2001 0.1829 -2.2941 6 6 2.7014 -0.6282 -3.4610 7 6 4.0605 -0.8066 -3.6699 8 6 4.4828 -1.5612 -4.7480 9 7 3.6106 -2.0990 -5.5779 10 6 2.3112 -1.9458 -5.4134 11 6 1.8147 -1.2094 -4.3546 12 6 2.0323 -0.7105 1.2304 13 8 2.7296 -1.6966 1.1191 14 7 1.7068 -0.2500 2.4545 15 6 2.1947 -0.9410 3.6507 16 6 1.6844 -0.2200 4.8999 17 1 0.5982 -0.1404 4.8558 18 6 2.0884 -1.0103 6.1467 19 6 1.5496 -0.3076 7.3949 20 6 2.1612 1.0936 7.4914 21 7 1.9010 1.8106 6.2356 22 6 1.2999 3.0410 6.2464 23 1 0.6234 3.3045 7.0459 24 6 1.5602 3.9495 5.2297 25 7 2.6070 3.7820 4.4496 26 14 0.4250 5.4098 4.9688 27 1 0.9020 6.5588 5.7798 28 1 0.4233 5.7849 3.5320 29 1 -0.9528 5.0467 5.3873 30 6 2.2924 1.1797 4.9677 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3632 0.5138 0.8900 33 1 -0.3633 0.5139 -0.8899 34 1 1.2538 0.6546 -2.5588 35 1 2.9319 0.9512 -2.0450 36 1 4.7798 -0.3651 -2.9960 37 1 5.5396 -1.7082 -4.9152 38 1 1.6271 -2.4011 -6.1143 39 1 0.7494 -1.0872 -4.2255 40 1 1.1490 0.5385 2.5436 41 1 3.2847 -0.9415 3.6508 42 1 1.8309 -1.9685 3.6505 43 1 3.1754 -1.0683 6.2034 44 1 1.6736 -2.0166 6.0888 45 1 1.8177 -0.8834 8.2808 46 1 0.4647 -0.2272 7.3279 47 1 3.2366 1.0127 7.6499 48 1 1.7092 1.6355 8.3220 49 1 2.7892 4.4171 3.7393 50 1 1.9247 1.7771 4.1335 51 1 3.3787 1.1061 4.9163 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001690388839.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:10:00 Heat of formation + Delta-G solvation = -34.912707 kcal Electronic energy + Delta-G solvation = -30395.876477 eV Core-core repulsion = 26295.515768 eV Total energy + Delta-G solvation = -4100.360709 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -40.46884 -39.82908 -38.16266 -37.44520 -34.66945 -33.71682 -33.13287 -31.72889 -31.47273 -30.48184 -29.78429 -27.14334 -25.84315 -25.33154 -23.82353 -23.69996 -22.27117 -22.18198 -20.91641 -20.19490 -19.08315 -17.62773 -17.28429 -16.80864 -16.73208 -16.49956 -15.86385 -15.61884 -15.27506 -15.04774 -14.66240 -14.22867 -14.08975 -13.97857 -13.91530 -13.67093 -13.52566 -13.29907 -12.93965 -12.86356 -12.61746 -12.36839 -12.27030 -12.22863 -12.05964 -11.80336 -11.42776 -11.27180 -11.08211 -10.77968 -10.54999 -10.30228 -10.23210 -10.16122 -9.99914 -9.97978 -9.75886 -9.71777 -9.50198 -9.40813 -9.35498 -8.77445 -8.56125 -6.73711 -5.87650 -3.30009 0.86042 0.88282 2.78052 2.92643 3.28313 3.36402 3.38516 3.54099 3.90040 4.20443 4.40674 4.40979 4.44990 4.69833 4.77865 4.81028 4.86150 4.94380 5.04276 5.09808 5.11975 5.26989 5.34843 5.42718 5.49506 5.51713 5.52249 5.53636 5.55227 5.68139 5.76056 5.91031 5.93634 6.04080 6.07016 6.24493 6.26066 6.36706 6.41544 6.45615 6.61043 6.66255 6.76241 6.80784 6.84350 6.96653 7.24257 7.53119 7.69302 7.70958 7.73665 8.35868 8.41562 9.12702 9.76030 10.33839 11.20354 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.013105 B = 0.002294 C = 0.002071 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2136.017466 B =12203.516067 C =13513.601969 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.069 3.931 3 H 0.092 0.908 4 O -0.349 6.349 5 C 0.096 3.904 6 C -0.042 4.042 7 C -0.149 4.149 8 C 0.096 3.904 9 N -0.484 5.484 10 C 0.094 3.906 11 C -0.152 4.152 12 C 0.514 3.486 13 O -0.530 6.530 14 N -0.716 5.716 15 C 0.132 3.868 16 C -0.127 4.127 17 H 0.069 0.931 18 C -0.100 4.100 19 C -0.133 4.133 20 C 0.143 3.857 21 N -0.592 5.592 22 C -0.250 4.250 23 H 0.065 0.935 24 C 0.001 3.999 25 N -0.902 5.902 26 Si 0.899 3.101 27 H -0.287 1.287 28 H -0.290 1.290 29 H -0.280 1.280 30 C 0.179 3.821 31 H 0.070 0.930 32 H 0.077 0.923 33 H 0.068 0.932 34 H 0.065 0.935 35 H 0.066 0.934 36 H 0.138 0.862 37 H 0.158 0.842 38 H 0.157 0.843 39 H 0.136 0.864 40 H 0.405 0.595 41 H 0.065 0.935 42 H 0.059 0.941 43 H 0.057 0.943 44 H 0.048 0.952 45 H 0.051 0.949 46 H 0.057 0.943 47 H 0.017 0.983 48 H 0.052 0.948 49 H 0.253 0.747 50 H 0.087 0.913 51 H 0.018 0.982 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.064 -7.889 -13.382 15.833 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.008 3.992 3 H 0.110 0.890 4 O -0.267 6.267 5 C 0.020 3.980 6 C -0.050 4.050 7 C -0.168 4.168 8 C -0.061 4.061 9 N -0.193 5.193 10 C -0.063 4.063 11 C -0.172 4.172 12 C 0.298 3.702 13 O -0.406 6.406 14 N -0.369 5.369 15 C 0.009 3.991 16 C -0.148 4.148 17 H 0.088 0.912 18 C -0.139 4.139 19 C -0.172 4.172 20 C 0.017 3.983 21 N -0.315 5.315 22 C -0.380 4.380 23 H 0.083 0.917 24 C -0.197 4.197 25 N -0.547 5.547 26 Si 0.729 3.271 27 H -0.214 1.214 28 H -0.216 1.216 29 H -0.205 1.205 30 C 0.053 3.947 31 H 0.089 0.911 32 H 0.095 0.905 33 H 0.087 0.913 34 H 0.083 0.917 35 H 0.085 0.915 36 H 0.156 0.844 37 H 0.175 0.825 38 H 0.174 0.826 39 H 0.154 0.846 40 H 0.240 0.760 41 H 0.083 0.917 42 H 0.077 0.923 43 H 0.076 0.924 44 H 0.066 0.934 45 H 0.070 0.930 46 H 0.076 0.924 47 H 0.035 0.965 48 H 0.071 0.929 49 H 0.063 0.937 50 H 0.105 0.895 51 H 0.036 0.964 Dipole moment (debyes) X Y Z Total from point charges -2.155 -9.163 -14.286 17.108 hybrid contribution -1.139 2.013 0.659 2.405 sum -3.294 -7.150 -13.627 15.737 Atomic orbital electron populations 1.22246 0.93480 1.03728 1.03402 1.21955 0.95139 0.96732 0.85408 0.89041 1.88099 1.86675 1.33493 1.18463 1.21426 1.00244 0.91709 0.84628 1.19988 0.93692 0.96582 0.94715 1.22150 0.95946 0.99709 0.99032 1.22783 0.99726 0.93082 0.90500 1.67661 1.03393 1.19694 1.28587 1.22759 0.91982 0.95478 0.96086 1.22084 1.01006 0.98286 0.95813 1.20200 0.80741 0.84933 0.84301 1.90701 1.37268 1.25958 1.86637 1.45969 1.53534 1.32221 1.05175 1.21399 0.99311 0.95200 0.83221 1.22067 1.01114 0.99370 0.92242 0.91219 1.21335 1.00469 0.97318 0.94732 1.21986 1.00627 0.98240 0.96359 1.20935 0.96503 0.90877 0.90024 1.44018 1.70449 1.17376 0.99619 1.19182 1.18828 0.90374 1.09595 0.91744 1.25041 0.96747 0.97400 1.00514 1.70052 1.25490 1.37400 1.21711 0.86347 0.80770 0.82839 0.77139 1.21378 1.21562 1.20513 1.20707 0.95740 0.87885 0.90392 0.91120 0.90454 0.91325 0.91665 0.91536 0.84423 0.82503 0.82612 0.84616 0.75953 0.91667 0.92267 0.92444 0.93372 0.93042 0.92426 0.96479 0.92901 0.93705 0.89535 0.96351 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.69 9.42 37.16 0.35 -1.34 16 2 C 0.07 0.86 3.14 -27.88 -0.09 0.77 16 3 H 0.09 1.00 7.79 -51.93 -0.40 0.59 16 4 O -0.35 -4.70 9.50 -55.14 -0.52 -5.22 16 5 C 0.10 0.96 5.92 36.00 0.21 1.17 16 6 C -0.04 -0.43 5.55 -104.32 -0.58 -1.01 16 7 C -0.15 -1.49 9.82 -39.44 -0.39 -1.88 16 8 C 0.10 0.95 11.18 -17.55 -0.20 0.75 16 9 N -0.48 -5.37 10.36 -13.26 -0.14 -5.51 16 10 C 0.09 0.88 11.18 -17.55 -0.20 0.68 16 11 C -0.15 -1.40 9.82 -39.44 -0.39 -1.78 16 12 C 0.51 8.20 7.23 -10.99 -0.08 8.12 16 13 O -0.53 -10.55 16.50 -14.36 -0.24 -10.78 16 14 N -0.72 -10.90 5.22 -60.29 -0.31 -11.21 16 15 C 0.13 2.13 5.07 -4.04 -0.02 2.11 16 16 C -0.13 -2.19 2.36 -90.72 -0.21 -2.41 16 17 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 18 C -0.10 -1.60 5.17 -26.69 -0.14 -1.73 16 19 C -0.13 -2.19 6.08 -26.62 -0.16 -2.35 16 20 C 0.14 2.88 6.52 -3.71 -0.02 2.85 16 21 N -0.59 -14.01 3.00 -172.58 -0.52 -14.53 16 22 C -0.25 -6.50 9.58 -15.06 -0.14 -6.64 16 23 H 0.06 1.66 7.88 -52.49 -0.41 1.25 16 24 C 0.00 0.03 4.92 -17.43 -0.09 -0.05 16 25 N -0.90 -24.48 11.20 55.49 0.62 -23.85 16 26 Si 0.90 20.38 29.59 -169.99 -5.03 15.35 16 27 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 28 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 29 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 30 C 0.18 3.89 4.36 -3.93 -0.02 3.88 16 31 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.08 0.71 7.56 -51.93 -0.39 0.32 16 33 H 0.07 0.55 7.87 -51.93 -0.41 0.14 16 34 H 0.07 0.51 7.83 -51.93 -0.41 0.10 16 35 H 0.07 0.60 8.04 -51.93 -0.42 0.18 16 36 H 0.14 1.20 8.06 -52.49 -0.42 0.78 16 37 H 0.16 1.14 8.06 -52.49 -0.42 0.72 16 38 H 0.16 1.01 8.06 -52.49 -0.42 0.59 16 39 H 0.14 0.94 8.06 -52.48 -0.42 0.52 16 40 H 0.40 5.80 7.11 -40.82 -0.29 5.50 16 41 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 42 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 43 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 44 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 45 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 46 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 47 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 48 H 0.05 1.05 7.93 -51.93 -0.41 0.63 16 49 H 0.25 6.65 8.31 -40.82 -0.34 6.31 16 50 H 0.09 2.03 5.26 -51.93 -0.27 1.76 16 51 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 LS Contribution 413.27 15.07 6.23 6.23 Total: -1.00 -32.77 413.27 -10.54 -43.31 By element: Atomic # 1 Polarization: 13.56 SS G_CDS: -8.47 Total: 5.08 kcal Atomic # 6 Polarization: 3.30 SS G_CDS: -2.16 Total: 1.14 kcal Atomic # 7 Polarization: -54.76 SS G_CDS: -0.35 Total: -55.10 kcal Atomic # 8 Polarization: -15.25 SS G_CDS: -0.76 Total: -16.01 kcal Atomic # 14 Polarization: 20.38 SS G_CDS: -5.03 Total: 15.35 kcal Total LS contribution 6.23 Total: 6.23 kcal Total: -32.77 -10.54 -43.31 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690388839.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.398 kcal (2) G-P(sol) polarization free energy of solvation -32.772 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.373 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.311 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.913 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds