Wall clock time and date at job start Wed Apr 1 2020 05:09:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08996 * 109.47682 * 2 1 4 4 O 1.42904 * 109.46824 * 239.99750 * 2 1 3 5 5 C 1.42900 * 113.99665 * 90.00443 * 4 2 1 6 6 C 1.50698 * 109.47206 * 179.97438 * 5 4 2 7 7 C 1.38657 * 120.79262 * 269.71900 * 6 5 4 8 8 C 1.38204 * 119.16165 * 179.75197 * 7 6 5 9 9 N 1.31864 * 120.76533 * 0.53534 * 8 7 6 10 10 C 1.31869 * 121.72854 * 359.73346 * 9 8 7 11 11 C 1.38200 * 120.76078 * 359.97438 * 10 9 8 12 12 C 1.50697 * 109.47064 * 120.00596 * 2 1 3 13 13 O 1.21284 * 120.00489 * 119.99930 * 12 2 1 14 14 N 1.34780 * 119.99543 * 299.99130 * 12 2 1 15 15 C 1.46509 * 119.99869 * 179.97438 * 14 12 2 16 16 C 1.52995 * 109.46883 * 180.02562 * 15 14 12 17 17 H 1.08992 * 109.49846 * 54.93821 * 16 15 14 18 18 C 1.53047 * 109.49647 * 175.00343 * 16 15 14 19 19 C 1.53034 * 109.53714 * 181.34656 * 18 16 15 20 20 C 1.53188 * 109.31564 * 298.63574 * 19 18 16 21 21 N 1.46928 * 108.77834 * 54.63496 * 20 19 18 22 22 C 1.36936 * 120.62964 * 126.36680 * 21 20 19 23 23 H 1.07994 * 120.00480 * 331.91792 * 22 21 20 24 24 C 1.38812 * 119.99772 * 151.91615 * 22 21 20 25 25 N 1.31621 * 119.99722 * 343.21919 * 24 22 21 26 26 Si 1.86797 * 120.00136 * 163.21954 * 24 22 21 27 27 H 1.48497 * 109.47343 * 89.99726 * 26 24 22 28 28 H 1.48499 * 109.47138 * 210.00291 * 26 24 22 29 29 H 1.48506 * 109.47011 * 329.99973 * 26 24 22 30 30 C 1.46927 * 118.73611 * 306.64616 * 21 20 19 31 31 H 1.09000 * 109.47235 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.46691 * 299.99857 * 1 2 3 33 33 H 1.08999 * 109.46943 * 59.99602 * 1 2 3 34 34 H 1.08998 * 109.47000 * 299.99724 * 5 4 2 35 35 H 1.08993 * 109.47314 * 59.99709 * 5 4 2 36 36 H 1.08001 * 120.41346 * 0.02562 * 7 6 5 37 37 H 1.08002 * 119.61380 * 180.25029 * 8 7 6 38 38 H 1.07998 * 119.61683 * 179.97438 * 10 9 8 39 39 H 1.08006 * 120.41502 * 179.97438 * 11 10 9 40 40 H 0.96994 * 120.00436 * 0.02562 * 14 12 2 41 41 H 1.09004 * 109.46818 * 60.00403 * 15 14 12 42 42 H 1.08996 * 109.46843 * 300.00584 * 15 14 12 43 43 H 1.09004 * 109.46002 * 61.32833 * 18 16 15 44 44 H 1.08998 * 109.44704 * 301.36256 * 18 16 15 45 45 H 1.08999 * 109.49819 * 178.68020 * 19 18 16 46 46 H 1.09001 * 109.52388 * 58.60116 * 19 18 16 47 47 H 1.09003 * 109.58509 * 294.84723 * 20 19 18 48 48 H 1.09000 * 109.70725 * 174.49531 * 20 19 18 49 49 H 0.97006 * 119.99968 * 180.02562 * 25 24 22 50 50 H 1.08995 * 109.58687 * 173.14018 * 30 21 20 51 51 H 1.08998 * 109.58568 * 293.56704 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 8 2.0063 -0.6737 -1.1668 5 6 2.2001 0.1829 -2.2941 6 6 2.7014 -0.6282 -3.4610 7 6 4.0605 -0.8066 -3.6699 8 6 4.4828 -1.5612 -4.7480 9 7 3.6106 -2.0990 -5.5779 10 6 2.3112 -1.9458 -5.4134 11 6 1.8147 -1.2094 -4.3546 12 6 2.0323 -0.7105 1.2304 13 8 2.7296 -1.6966 1.1191 14 7 1.7068 -0.2500 2.4545 15 6 2.1947 -0.9410 3.6507 16 6 1.6844 -0.2200 4.8999 17 1 0.5982 -0.1404 4.8558 18 6 2.0884 -1.0103 6.1467 19 6 1.5496 -0.3076 7.3949 20 6 2.1612 1.0936 7.4914 21 7 1.9010 1.8106 6.2356 22 6 1.2999 3.0410 6.2464 23 1 0.6234 3.3045 7.0459 24 6 1.5602 3.9495 5.2297 25 7 2.6070 3.7820 4.4496 26 14 0.4250 5.4098 4.9688 27 1 0.9020 6.5588 5.7798 28 1 0.4233 5.7849 3.5320 29 1 -0.9528 5.0467 5.3873 30 6 2.2924 1.1797 4.9677 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3632 0.5138 0.8900 33 1 -0.3633 0.5139 -0.8899 34 1 1.2538 0.6546 -2.5588 35 1 2.9319 0.9512 -2.0450 36 1 4.7798 -0.3651 -2.9960 37 1 5.5396 -1.7082 -4.9152 38 1 1.6271 -2.4011 -6.1143 39 1 0.7494 -1.0872 -4.2255 40 1 1.1490 0.5385 2.5436 41 1 3.2847 -0.9415 3.6508 42 1 1.8309 -1.9685 3.6505 43 1 3.1754 -1.0683 6.2034 44 1 1.6736 -2.0166 6.0888 45 1 1.8177 -0.8834 8.2808 46 1 0.4647 -0.2272 7.3279 47 1 3.2366 1.0127 7.6499 48 1 1.7092 1.6355 8.3220 49 1 2.7892 4.4171 3.7393 50 1 1.9247 1.7771 4.1335 51 1 3.3787 1.1061 4.9163 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001690388839.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:09:59 Heat of formation + Delta-G solvation = -54.440929 kcal Electronic energy + Delta-G solvation = -30396.723284 eV Core-core repulsion = 26295.515768 eV Total energy + Delta-G solvation = -4101.207516 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.28546 -40.95201 -39.50913 -38.63276 -36.14470 -34.86833 -34.45974 -32.95346 -32.17016 -31.92521 -31.27353 -27.90804 -27.35537 -26.98667 -24.89111 -24.43167 -23.83780 -22.99526 -22.37775 -21.46985 -20.56771 -18.77746 -18.54226 -18.19170 -17.53210 -17.42336 -16.92656 -16.72587 -16.51517 -16.36697 -15.84285 -15.74950 -15.24693 -15.22956 -14.98804 -14.80321 -14.55863 -14.52314 -14.23346 -14.02616 -13.86114 -13.71748 -13.55363 -13.33785 -13.00696 -12.89699 -12.86701 -12.53867 -12.50352 -12.30669 -12.21694 -11.97132 -11.78103 -11.55239 -11.31369 -11.10962 -11.07028 -10.78175 -10.53021 -10.51810 -10.49358 -10.11105 -10.08855 -8.63463 -7.83882 -5.29740 0.10914 0.17643 1.48696 1.51795 1.54651 1.60611 1.88033 2.53946 2.68935 3.06240 3.28604 3.54689 3.58250 3.63626 3.73514 3.75855 3.92064 4.00847 4.03438 4.08991 4.09740 4.15555 4.17836 4.35983 4.36907 4.40032 4.53542 4.64820 4.66713 4.68025 4.77023 4.81271 4.86474 4.88768 4.89747 4.96434 5.04642 5.16174 5.16414 5.23655 5.32753 5.35661 5.39587 5.47589 5.56892 5.69359 5.72975 5.79370 5.95208 6.42324 6.51077 6.97443 7.17354 7.18398 7.88702 8.41720 9.21733 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.013105 B = 0.002294 C = 0.002071 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2136.017466 B =12203.516067 C =13513.601969 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.073 3.927 3 H 0.107 0.893 4 O -0.376 6.376 5 C 0.094 3.906 6 C -0.059 4.059 7 C -0.162 4.162 8 C 0.085 3.915 9 N -0.509 5.509 10 C 0.086 3.914 11 C -0.153 4.153 12 C 0.509 3.491 13 O -0.575 6.575 14 N -0.711 5.711 15 C 0.139 3.861 16 C -0.110 4.110 17 H 0.074 0.926 18 C -0.100 4.100 19 C -0.121 4.121 20 C 0.135 3.865 21 N -0.611 5.611 22 C -0.263 4.263 23 H 0.063 0.937 24 C -0.045 4.045 25 N -0.930 5.930 26 Si 0.963 3.037 27 H -0.293 1.293 28 H -0.287 1.287 29 H -0.271 1.271 30 C 0.189 3.811 31 H 0.062 0.938 32 H 0.083 0.917 33 H 0.093 0.907 34 H 0.092 0.908 35 H 0.071 0.929 36 H 0.143 0.857 37 H 0.176 0.824 38 H 0.182 0.818 39 H 0.159 0.841 40 H 0.410 0.590 41 H 0.048 0.952 42 H 0.072 0.928 43 H 0.052 0.948 44 H 0.079 0.921 45 H 0.081 0.919 46 H 0.058 0.942 47 H 0.008 0.992 48 H 0.051 0.949 49 H 0.250 0.750 50 H 0.067 0.933 51 H -0.015 1.015 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.107 -8.163 -13.674 16.725 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.012 3.988 3 H 0.125 0.875 4 O -0.295 6.295 5 C 0.018 3.982 6 C -0.067 4.067 7 C -0.182 4.182 8 C -0.071 4.071 9 N -0.219 5.219 10 C -0.071 4.071 11 C -0.172 4.172 12 C 0.296 3.704 13 O -0.454 6.454 14 N -0.364 5.364 15 C 0.015 3.985 16 C -0.130 4.130 17 H 0.092 0.908 18 C -0.138 4.138 19 C -0.160 4.160 20 C 0.010 3.990 21 N -0.334 5.334 22 C -0.393 4.393 23 H 0.081 0.919 24 C -0.240 4.240 25 N -0.576 5.576 26 Si 0.791 3.209 27 H -0.220 1.220 28 H -0.213 1.213 29 H -0.196 1.196 30 C 0.063 3.937 31 H 0.081 0.919 32 H 0.102 0.898 33 H 0.112 0.888 34 H 0.110 0.890 35 H 0.090 0.910 36 H 0.161 0.839 37 H 0.193 0.807 38 H 0.199 0.801 39 H 0.177 0.823 40 H 0.247 0.753 41 H 0.066 0.934 42 H 0.090 0.910 43 H 0.071 0.929 44 H 0.098 0.902 45 H 0.100 0.900 46 H 0.077 0.923 47 H 0.026 0.974 48 H 0.070 0.930 49 H 0.059 0.941 50 H 0.085 0.915 51 H 0.003 0.997 Dipole moment (debyes) X Y Z Total from point charges -4.219 -9.437 -14.557 17.854 hybrid contribution -0.437 2.109 0.802 2.298 sum -4.656 -7.328 -13.755 16.266 Atomic orbital electron populations 1.22230 0.91198 1.03747 1.04998 1.21988 0.96699 0.96481 0.83657 0.87533 1.88060 1.87034 1.35042 1.19339 1.21611 1.01778 0.91366 0.83460 1.20232 0.94067 0.97173 0.95255 1.22337 0.96403 1.00069 0.99380 1.23119 1.00671 0.92936 0.90385 1.67694 1.04367 1.20505 1.29315 1.23248 0.91900 0.95305 0.96629 1.22365 1.02094 0.97535 0.95235 1.20928 0.79757 0.84412 0.85328 1.90671 1.39361 1.28111 1.87301 1.45965 1.53208 1.32160 1.05053 1.21271 0.98301 0.95776 0.83161 1.21825 1.00764 0.96765 0.93694 0.90792 1.21366 1.00424 0.98519 0.93494 1.21864 1.00271 0.95933 0.97953 1.21114 0.96298 0.92942 0.88677 1.44308 1.70495 1.17357 1.01231 1.19463 1.18803 0.91457 1.09579 0.91944 1.25719 0.97957 0.99875 1.00482 1.70199 1.26917 1.38297 1.22188 0.85364 0.79250 0.79481 0.76813 1.21988 1.21264 1.19609 1.20506 0.93785 0.90143 0.89286 0.91864 0.89789 0.88780 0.89047 0.91046 0.83870 0.80725 0.80090 0.82299 0.75319 0.93379 0.90953 0.92884 0.90246 0.90007 0.92300 0.97398 0.93040 0.94066 0.91496 0.99743 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.89 9.42 71.98 0.68 -2.21 16 2 C 0.07 1.72 3.14 29.85 0.09 1.82 16 3 H 0.11 2.18 7.79 -2.39 -0.02 2.16 16 4 O -0.38 -9.78 9.50 -129.94 -1.23 -11.02 16 5 C 0.09 1.73 5.92 71.24 0.42 2.15 16 6 C -0.06 -1.17 5.55 -19.67 -0.11 -1.28 16 7 C -0.16 -3.25 9.82 22.36 0.22 -3.03 16 8 C 0.08 1.68 11.18 84.68 0.95 2.62 16 9 N -0.51 -11.03 10.36 -195.85 -2.03 -13.06 16 10 C 0.09 1.50 11.18 84.68 0.95 2.45 16 11 C -0.15 -2.57 9.82 22.36 0.22 -2.35 16 12 C 0.51 16.20 7.23 87.66 0.63 16.83 16 13 O -0.58 -23.25 16.50 15.99 0.26 -22.99 16 14 N -0.71 -21.46 5.22 -463.04 -2.42 -23.88 16 15 C 0.14 4.41 5.07 86.38 0.44 4.85 16 16 C -0.11 -3.69 2.36 -10.86 -0.03 -3.72 16 17 H 0.07 2.46 8.14 -2.39 -0.02 2.44 16 18 C -0.10 -2.97 5.17 30.62 0.16 -2.81 16 19 C -0.12 -3.72 6.08 30.67 0.19 -3.53 16 20 C 0.14 5.38 6.52 86.36 0.56 5.94 16 21 N -0.61 -29.07 3.00 -699.93 -2.10 -31.17 16 22 C -0.26 -13.70 9.58 84.03 0.81 -12.90 16 23 H 0.06 3.21 7.88 -2.91 -0.02 3.19 16 24 C -0.04 -2.33 4.92 84.86 0.42 -1.92 16 25 N -0.93 -51.30 11.20 21.65 0.24 -51.06 16 26 Si 0.96 41.81 29.59 68.60 2.03 43.84 16 27 H -0.29 -12.91 7.11 99.48 0.71 -12.20 16 28 H -0.29 -12.22 7.11 99.48 0.71 -11.51 16 29 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 30 C 0.19 8.35 4.36 86.22 0.38 8.72 16 31 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 32 H 0.08 1.36 7.56 -2.39 -0.02 1.34 16 33 H 0.09 1.19 7.87 -2.39 -0.02 1.17 16 34 H 0.09 1.17 7.83 -2.39 -0.02 1.15 16 35 H 0.07 1.21 8.04 -2.39 -0.02 1.20 16 36 H 0.14 2.55 8.06 -2.91 -0.02 2.52 16 37 H 0.18 2.52 8.06 -2.91 -0.02 2.50 16 38 H 0.18 2.02 8.06 -2.91 -0.02 2.00 16 39 H 0.16 1.81 8.06 -2.91 -0.02 1.78 16 40 H 0.41 11.55 7.11 -92.71 -0.66 10.89 16 41 H 0.05 1.70 8.14 -2.38 -0.02 1.68 16 42 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 43 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 44 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 45 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 46 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 47 H 0.01 0.33 8.14 -2.39 -0.02 0.31 16 48 H 0.05 2.02 7.93 -2.39 -0.02 2.00 16 49 H 0.25 13.35 8.31 -92.70 -0.77 12.58 16 50 H 0.07 3.20 5.26 -2.39 -0.01 3.19 16 51 H -0.02 -0.78 8.14 -2.39 -0.02 -0.80 16 Total: -1.00 -72.01 413.27 1.98 -70.03 By element: Atomic # 1 Polarization: 27.42 SS G_CDS: 0.25 Total: 27.67 kcal Atomic # 6 Polarization: 4.67 SS G_CDS: 6.97 Total: 11.64 kcal Atomic # 7 Polarization: -112.87 SS G_CDS: -6.30 Total: -119.17 kcal Atomic # 8 Polarization: -33.03 SS G_CDS: -0.97 Total: -34.01 kcal Atomic # 14 Polarization: 41.81 SS G_CDS: 2.03 Total: 43.84 kcal Total: -72.01 1.98 -70.03 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690388839.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.585 kcal (2) G-P(sol) polarization free energy of solvation -72.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.421 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.026 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.441 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds