Wall clock time and date at job start Wed Apr 1 2020 05:10:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09005 * 109.47313 * 2 1 4 4 O 1.42901 * 109.46779 * 240.00536 * 2 1 3 5 5 C 1.42901 * 114.00408 * 90.00096 * 4 2 1 6 6 C 1.50700 * 109.47166 * 180.02562 * 5 4 2 7 7 C 1.38653 * 120.78809 * 269.71272 * 6 5 4 8 8 C 1.38202 * 119.16296 * 179.75293 * 7 6 5 9 9 N 1.31874 * 120.76231 * 0.53759 * 8 7 6 10 10 C 1.31871 * 121.72500 * 359.73940 * 9 8 7 11 11 C 1.38207 * 120.76412 * 359.97438 * 10 9 8 12 12 C 1.50697 * 109.47659 * 120.00050 * 2 1 3 13 13 O 1.21290 * 119.99726 * 119.99355 * 12 2 1 14 14 N 1.34776 * 120.00226 * 300.00447 * 12 2 1 15 15 C 1.46500 * 120.00242 * 179.97438 * 14 12 2 16 16 C 1.52995 * 109.47246 * 179.97438 * 15 14 12 17 17 H 1.09003 * 109.49682 * 305.06335 * 16 15 14 18 18 C 1.53036 * 109.49840 * 184.99780 * 16 15 14 19 19 C 1.53039 * 109.52897 * 178.65874 * 18 16 15 20 20 C 1.53171 * 109.32745 * 61.37214 * 19 18 16 21 21 N 1.46930 * 108.76578 * 305.35409 * 20 19 18 22 22 C 1.36928 * 120.63317 * 233.63038 * 21 20 19 23 23 H 1.07997 * 120.00566 * 151.81367 * 22 21 20 24 24 C 1.38814 * 119.99954 * 331.81007 * 22 21 20 25 25 N 1.31627 * 119.99987 * 343.08825 * 24 22 21 26 26 Si 1.86799 * 119.99883 * 163.08217 * 24 22 21 27 27 H 1.48505 * 109.47105 * 90.00789 * 26 24 22 28 28 H 1.48505 * 109.47268 * 210.00080 * 26 24 22 29 29 H 1.48493 * 109.47507 * 330.00306 * 26 24 22 30 30 C 1.46929 * 118.73376 * 53.61081 * 21 20 19 31 31 H 1.08995 * 109.47181 * 180.02562 * 1 2 3 32 32 H 1.09013 * 109.46574 * 299.99925 * 1 2 3 33 33 H 1.09001 * 109.47507 * 59.99152 * 1 2 3 34 34 H 1.09002 * 109.46728 * 299.99766 * 5 4 2 35 35 H 1.09002 * 109.47042 * 59.99732 * 5 4 2 36 36 H 1.08006 * 120.41640 * 0.02562 * 7 6 5 37 37 H 1.07992 * 119.62001 * 180.29427 * 8 7 6 38 38 H 1.08000 * 119.61550 * 179.97438 * 10 9 8 39 39 H 1.08007 * 120.41547 * 180.02562 * 11 10 9 40 40 H 0.96995 * 119.99663 * 359.97438 * 14 12 2 41 41 H 1.09005 * 109.47038 * 59.99213 * 15 14 12 42 42 H 1.09004 * 109.46475 * 299.99552 * 15 14 12 43 43 H 1.09003 * 109.46291 * 298.66905 * 18 16 15 44 44 H 1.08995 * 109.46184 * 58.64651 * 18 16 15 45 45 H 1.08998 * 109.50211 * 181.31070 * 19 18 16 46 46 H 1.09003 * 109.49741 * 301.41247 * 19 18 16 47 47 H 1.09001 * 109.58962 * 185.57318 * 20 19 18 48 48 H 1.08993 * 109.70649 * 65.21448 * 20 19 18 49 49 H 0.96996 * 119.99377 * 179.97438 * 25 24 22 50 50 H 1.09005 * 109.58563 * 186.59883 * 30 21 20 51 51 H 1.09003 * 109.70189 * 66.24888 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0062 -0.6735 -1.1669 5 6 2.2000 0.1830 -2.2942 6 6 2.7001 -0.6283 -3.4615 7 6 4.0589 -0.8074 -3.6711 8 6 4.4802 -1.5621 -4.7495 9 7 3.6072 -2.0994 -5.5790 10 6 2.3080 -1.9453 -5.4138 11 6 1.8125 -1.2085 -4.3547 12 6 2.0324 -0.7104 1.2304 13 8 2.7297 -1.6966 1.1190 14 7 1.7069 -0.2500 2.4545 15 6 2.1948 -0.9410 3.6507 16 6 1.6855 -0.2194 4.8999 17 1 1.9734 0.8310 4.8561 18 6 2.2950 -0.8645 6.1466 19 6 1.8122 -0.1222 7.3948 20 6 0.2874 -0.2306 7.4910 21 7 -0.3012 0.2546 6.2352 22 6 -1.2600 1.2321 6.2460 23 1 -1.3655 1.8944 5.3995 24 6 -2.0964 1.3718 7.3449 25 7 -2.2068 0.3920 8.2169 26 14 -3.0654 2.9505 7.5864 27 1 -4.3829 2.8308 6.9117 28 1 -3.2724 3.1872 9.0378 29 1 -2.3114 4.0885 7.0020 30 6 0.1590 -0.3288 4.9677 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5139 0.8901 33 1 -0.3634 0.5140 -0.8899 34 1 1.2537 0.6548 -2.5589 35 1 2.9319 0.9514 -2.0451 36 1 4.7789 -0.3664 -2.9976 37 1 5.5367 -1.7104 -4.9169 38 1 1.6232 -2.4001 -6.1143 39 1 0.7473 -1.0862 -4.2246 40 1 1.1494 0.5387 2.5436 41 1 3.2849 -0.9414 3.6507 42 1 1.8311 -1.9685 3.6504 43 1 1.9865 -1.9085 6.2031 44 1 3.3821 -0.8097 6.0893 45 1 2.2649 -0.5673 8.2808 46 1 2.0988 0.9273 7.3275 47 1 -0.0706 0.3780 8.3214 48 1 0.0022 -1.2704 7.6506 49 1 -2.7910 0.4899 8.9849 50 1 -0.2838 0.2149 4.1331 51 1 -0.1348 -1.3773 4.9177 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001690388840.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:10:04 Heat of formation + Delta-G solvation = -34.190606 kcal Electronic energy + Delta-G solvation = -29939.595563 eV Core-core repulsion = 25839.266167 eV Total energy + Delta-G solvation = -4100.329396 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -40.57261 -39.99995 -38.25831 -37.53181 -34.85560 -33.83191 -33.09290 -31.63571 -31.56012 -30.48731 -30.05317 -27.26226 -25.85610 -25.32059 -23.93443 -23.79717 -22.37122 -22.13253 -21.03284 -20.38802 -19.10583 -17.79418 -17.42326 -16.86308 -16.78683 -16.53561 -15.96814 -15.79246 -15.34703 -14.96821 -14.88681 -14.43803 -14.19734 -14.11828 -13.96845 -13.72868 -13.47329 -13.37431 -13.04312 -12.81681 -12.73276 -12.37768 -12.37020 -12.21883 -12.14439 -11.90142 -11.57731 -11.32619 -11.06397 -10.74905 -10.54883 -10.31556 -10.28024 -10.22026 -10.11004 -9.98044 -9.84279 -9.74388 -9.49909 -9.47861 -9.46628 -8.98023 -8.51464 -6.72037 -5.84142 -3.27317 0.76426 0.79330 2.57722 2.77437 3.32055 3.39684 3.40932 3.42075 3.76270 4.12247 4.29880 4.30450 4.42920 4.54017 4.65332 4.66703 4.73986 4.78061 4.91933 4.96473 5.05528 5.25383 5.25539 5.32988 5.39681 5.41059 5.42398 5.42671 5.57609 5.58515 5.79090 5.85470 5.91327 5.93632 5.95673 6.19100 6.28287 6.32585 6.33272 6.43943 6.54268 6.64111 6.68307 6.73741 6.81808 6.91724 7.35643 7.51903 7.61106 7.63132 7.73021 8.22216 8.39327 9.15453 9.79060 10.36152 11.24104 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.018455 B = 0.001860 C = 0.001733 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1516.873793 B =15048.428725 C =16150.475512 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.071 3.929 3 H 0.088 0.912 4 O -0.349 6.349 5 C 0.098 3.902 6 C -0.043 4.043 7 C -0.149 4.149 8 C 0.096 3.904 9 N -0.483 5.483 10 C 0.095 3.905 11 C -0.151 4.151 12 C 0.512 3.488 13 O -0.525 6.525 14 N -0.720 5.720 15 C 0.128 3.872 16 C -0.117 4.117 17 H 0.073 0.927 18 C -0.100 4.100 19 C -0.141 4.141 20 C 0.169 3.831 21 N -0.591 5.591 22 C -0.255 4.255 23 H 0.064 0.936 24 C 0.003 3.997 25 N -0.901 5.901 26 Si 0.901 3.099 27 H -0.287 1.287 28 H -0.289 1.289 29 H -0.280 1.280 30 C 0.154 3.846 31 H 0.072 0.928 32 H 0.078 0.922 33 H 0.068 0.932 34 H 0.066 0.934 35 H 0.065 0.935 36 H 0.137 0.863 37 H 0.158 0.842 38 H 0.157 0.843 39 H 0.137 0.863 40 H 0.403 0.597 41 H 0.062 0.938 42 H 0.067 0.933 43 H 0.057 0.943 44 H 0.047 0.953 45 H 0.050 0.950 46 H 0.054 0.946 47 H 0.086 0.914 48 H 0.018 0.982 49 H 0.254 0.746 50 H 0.049 0.951 51 H 0.019 0.981 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.883 1.181 -20.826 23.082 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.009 3.991 3 H 0.106 0.894 4 O -0.267 6.267 5 C 0.021 3.979 6 C -0.052 4.052 7 C -0.169 4.169 8 C -0.061 4.061 9 N -0.193 5.193 10 C -0.062 4.062 11 C -0.171 4.171 12 C 0.296 3.704 13 O -0.400 6.400 14 N -0.374 5.374 15 C 0.005 3.995 16 C -0.138 4.138 17 H 0.091 0.909 18 C -0.138 4.138 19 C -0.181 4.181 20 C 0.043 3.957 21 N -0.313 5.313 22 C -0.384 4.384 23 H 0.082 0.918 24 C -0.196 4.196 25 N -0.545 5.545 26 Si 0.731 3.269 27 H -0.214 1.214 28 H -0.215 1.215 29 H -0.205 1.205 30 C 0.027 3.973 31 H 0.092 0.908 32 H 0.097 0.903 33 H 0.087 0.913 34 H 0.084 0.916 35 H 0.083 0.917 36 H 0.155 0.845 37 H 0.175 0.825 38 H 0.175 0.825 39 H 0.155 0.845 40 H 0.238 0.762 41 H 0.081 0.919 42 H 0.085 0.915 43 H 0.076 0.924 44 H 0.066 0.934 45 H 0.068 0.932 46 H 0.073 0.927 47 H 0.104 0.896 48 H 0.036 0.964 49 H 0.064 0.936 50 H 0.068 0.932 51 H 0.037 0.963 Dipole moment (debyes) X Y Z Total from point charges 10.605 -0.235 -21.449 23.929 hybrid contribution -1.219 1.919 1.052 2.505 sum 9.386 1.684 -20.397 22.516 Atomic orbital electron populations 1.22268 0.93134 1.04195 1.03468 1.21949 0.95367 0.96315 0.85440 0.89396 1.88124 1.86630 1.33500 1.18442 1.21420 1.00183 0.91639 0.84637 1.19967 0.93693 0.96761 0.94732 1.22118 0.95879 0.99860 0.99063 1.22786 0.99737 0.93059 0.90503 1.67674 1.03388 1.19608 1.28586 1.22786 0.91981 0.95334 0.96072 1.22098 1.01061 0.98185 0.95754 1.20261 0.80763 0.85052 0.84288 1.90723 1.37116 1.25628 1.86569 1.46003 1.53721 1.32331 1.05328 1.21480 0.98511 0.96509 0.83012 1.21956 0.99604 0.99623 0.92620 0.90862 1.21341 0.98271 0.99478 0.94707 1.22164 1.00697 0.99443 0.95762 1.20792 0.86935 0.97764 0.90200 1.44025 1.43751 1.43620 0.99936 1.19119 1.09025 1.06552 1.03718 0.91819 1.25058 0.97473 0.97566 0.99513 1.70037 1.39796 1.29932 1.14695 0.86323 0.79942 0.83460 0.77165 1.21402 1.21545 1.20520 1.20891 0.89964 0.96304 0.90120 0.90847 0.90312 0.91256 0.91599 0.91711 0.84536 0.82514 0.82529 0.84533 0.76224 0.91928 0.91484 0.92441 0.93424 0.93164 0.92749 0.89595 0.96414 0.93592 0.93227 0.96340 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.48 9.42 37.16 0.35 -1.13 16 2 C 0.07 0.71 3.14 -27.89 -0.09 0.62 16 3 H 0.09 0.64 7.79 -51.93 -0.40 0.24 16 4 O -0.35 -4.07 9.50 -55.14 -0.52 -4.59 16 5 C 0.10 0.78 5.92 36.01 0.21 1.00 16 6 C -0.04 -0.39 5.55 -104.32 -0.58 -0.96 16 7 C -0.15 -1.28 9.82 -39.44 -0.39 -1.67 16 8 C 0.10 0.84 11.18 -17.55 -0.20 0.64 16 9 N -0.48 -4.91 10.36 -13.25 -0.14 -5.04 16 10 C 0.10 0.81 11.18 -17.55 -0.20 0.61 16 11 C -0.15 -1.23 9.82 -39.44 -0.39 -1.61 16 12 C 0.51 6.98 7.23 -10.99 -0.08 6.90 16 13 O -0.53 -9.49 16.50 -14.36 -0.24 -9.73 16 14 N -0.72 -8.99 5.22 -60.29 -0.32 -9.31 16 15 C 0.13 1.80 5.07 -4.04 -0.02 1.78 16 16 C -0.12 -1.84 2.37 -90.51 -0.21 -2.05 16 17 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 18 C -0.10 -1.59 5.17 -26.69 -0.14 -1.73 16 19 C -0.14 -2.58 6.08 -26.62 -0.16 -2.74 16 20 C 0.17 3.89 5.30 -3.72 -0.02 3.87 16 21 N -0.59 -14.04 2.99 -172.33 -0.52 -14.55 16 22 C -0.25 -6.65 9.58 -15.06 -0.14 -6.79 16 23 H 0.06 1.61 7.88 -52.49 -0.41 1.19 16 24 C 0.00 0.07 4.92 -17.43 -0.09 -0.01 16 25 N -0.90 -25.52 11.20 55.49 0.62 -24.90 16 26 Si 0.90 20.93 29.59 -169.99 -5.03 15.90 16 27 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 28 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 29 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 30 C 0.15 2.96 5.60 -3.71 -0.02 2.94 16 31 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 32 H 0.08 0.62 7.57 -51.92 -0.39 0.22 16 33 H 0.07 0.46 7.87 -51.93 -0.41 0.05 16 34 H 0.07 0.39 7.83 -51.93 -0.41 -0.01 16 35 H 0.06 0.42 8.04 -51.93 -0.42 0.00 16 36 H 0.14 0.94 8.06 -52.48 -0.42 0.52 16 37 H 0.16 0.96 8.06 -52.49 -0.42 0.53 16 38 H 0.16 0.90 8.06 -52.49 -0.42 0.48 16 39 H 0.14 0.82 8.06 -52.48 -0.42 0.40 16 40 H 0.40 4.30 7.12 -40.82 -0.29 4.01 16 41 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 42 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 43 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 44 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 45 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 46 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 47 H 0.09 2.23 6.06 -51.93 -0.31 1.92 16 48 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 49 H 0.25 6.97 8.31 -40.82 -0.34 6.63 16 50 H 0.05 0.90 7.14 -51.93 -0.37 0.52 16 51 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 LS Contribution 413.31 15.07 6.23 6.23 Total: -1.00 -33.87 413.31 -10.54 -44.41 By element: Atomic # 1 Polarization: 10.37 SS G_CDS: -8.47 Total: 1.90 kcal Atomic # 6 Polarization: 1.83 SS G_CDS: -2.15 Total: -0.32 kcal Atomic # 7 Polarization: -53.45 SS G_CDS: -0.35 Total: -53.80 kcal Atomic # 8 Polarization: -13.56 SS G_CDS: -0.76 Total: -14.32 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.03 Total: 15.90 kcal Total LS contribution 6.23 Total: 6.23 kcal Total: -33.87 -10.54 -44.41 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690388840.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.221 kcal (2) G-P(sol) polarization free energy of solvation -33.874 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.653 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.412 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.191 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds