Wall clock time and date at job start Wed Apr 1 2020 05:10:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09005 * 109.47313 * 2 1 4 4 O 1.42901 * 109.46779 * 240.00536 * 2 1 3 5 5 C 1.42901 * 114.00408 * 90.00096 * 4 2 1 6 6 C 1.50700 * 109.47166 * 180.02562 * 5 4 2 7 7 C 1.38653 * 120.78809 * 269.71272 * 6 5 4 8 8 C 1.38202 * 119.16296 * 179.75293 * 7 6 5 9 9 N 1.31874 * 120.76231 * 0.53759 * 8 7 6 10 10 C 1.31871 * 121.72500 * 359.73940 * 9 8 7 11 11 C 1.38207 * 120.76412 * 359.97438 * 10 9 8 12 12 C 1.50697 * 109.47659 * 120.00050 * 2 1 3 13 13 O 1.21290 * 119.99726 * 119.99355 * 12 2 1 14 14 N 1.34776 * 120.00226 * 300.00447 * 12 2 1 15 15 C 1.46500 * 120.00242 * 179.97438 * 14 12 2 16 16 C 1.52995 * 109.47246 * 179.97438 * 15 14 12 17 17 H 1.09003 * 109.49682 * 305.06335 * 16 15 14 18 18 C 1.53036 * 109.49840 * 184.99780 * 16 15 14 19 19 C 1.53039 * 109.52897 * 178.65874 * 18 16 15 20 20 C 1.53171 * 109.32745 * 61.37214 * 19 18 16 21 21 N 1.46930 * 108.76578 * 305.35409 * 20 19 18 22 22 C 1.36928 * 120.63317 * 233.63038 * 21 20 19 23 23 H 1.07997 * 120.00566 * 151.81367 * 22 21 20 24 24 C 1.38814 * 119.99954 * 331.81007 * 22 21 20 25 25 N 1.31627 * 119.99987 * 343.08825 * 24 22 21 26 26 Si 1.86799 * 119.99883 * 163.08217 * 24 22 21 27 27 H 1.48505 * 109.47105 * 90.00789 * 26 24 22 28 28 H 1.48505 * 109.47268 * 210.00080 * 26 24 22 29 29 H 1.48493 * 109.47507 * 330.00306 * 26 24 22 30 30 C 1.46929 * 118.73376 * 53.61081 * 21 20 19 31 31 H 1.08995 * 109.47181 * 180.02562 * 1 2 3 32 32 H 1.09013 * 109.46574 * 299.99925 * 1 2 3 33 33 H 1.09001 * 109.47507 * 59.99152 * 1 2 3 34 34 H 1.09002 * 109.46728 * 299.99766 * 5 4 2 35 35 H 1.09002 * 109.47042 * 59.99732 * 5 4 2 36 36 H 1.08006 * 120.41640 * 0.02562 * 7 6 5 37 37 H 1.07992 * 119.62001 * 180.29427 * 8 7 6 38 38 H 1.08000 * 119.61550 * 179.97438 * 10 9 8 39 39 H 1.08007 * 120.41547 * 180.02562 * 11 10 9 40 40 H 0.96995 * 119.99663 * 359.97438 * 14 12 2 41 41 H 1.09005 * 109.47038 * 59.99213 * 15 14 12 42 42 H 1.09004 * 109.46475 * 299.99552 * 15 14 12 43 43 H 1.09003 * 109.46291 * 298.66905 * 18 16 15 44 44 H 1.08995 * 109.46184 * 58.64651 * 18 16 15 45 45 H 1.08998 * 109.50211 * 181.31070 * 19 18 16 46 46 H 1.09003 * 109.49741 * 301.41247 * 19 18 16 47 47 H 1.09001 * 109.58962 * 185.57318 * 20 19 18 48 48 H 1.08993 * 109.70649 * 65.21448 * 20 19 18 49 49 H 0.96996 * 119.99377 * 179.97438 * 25 24 22 50 50 H 1.09005 * 109.58563 * 186.59883 * 30 21 20 51 51 H 1.09003 * 109.70189 * 66.24888 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0062 -0.6735 -1.1669 5 6 2.2000 0.1830 -2.2942 6 6 2.7001 -0.6283 -3.4615 7 6 4.0589 -0.8074 -3.6711 8 6 4.4802 -1.5621 -4.7495 9 7 3.6072 -2.0994 -5.5790 10 6 2.3080 -1.9453 -5.4138 11 6 1.8125 -1.2085 -4.3547 12 6 2.0324 -0.7104 1.2304 13 8 2.7297 -1.6966 1.1190 14 7 1.7069 -0.2500 2.4545 15 6 2.1948 -0.9410 3.6507 16 6 1.6855 -0.2194 4.8999 17 1 1.9734 0.8310 4.8561 18 6 2.2950 -0.8645 6.1466 19 6 1.8122 -0.1222 7.3948 20 6 0.2874 -0.2306 7.4910 21 7 -0.3012 0.2546 6.2352 22 6 -1.2600 1.2321 6.2460 23 1 -1.3655 1.8944 5.3995 24 6 -2.0964 1.3718 7.3449 25 7 -2.2068 0.3920 8.2169 26 14 -3.0654 2.9505 7.5864 27 1 -4.3829 2.8308 6.9117 28 1 -3.2724 3.1872 9.0378 29 1 -2.3114 4.0885 7.0020 30 6 0.1590 -0.3288 4.9677 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5139 0.8901 33 1 -0.3634 0.5140 -0.8899 34 1 1.2537 0.6548 -2.5589 35 1 2.9319 0.9514 -2.0451 36 1 4.7789 -0.3664 -2.9976 37 1 5.5367 -1.7104 -4.9169 38 1 1.6232 -2.4001 -6.1143 39 1 0.7473 -1.0862 -4.2246 40 1 1.1494 0.5387 2.5436 41 1 3.2849 -0.9414 3.6507 42 1 1.8311 -1.9685 3.6504 43 1 1.9865 -1.9085 6.2031 44 1 3.3821 -0.8097 6.0893 45 1 2.2649 -0.5673 8.2808 46 1 2.0988 0.9273 7.3275 47 1 -0.0706 0.3780 8.3214 48 1 0.0022 -1.2704 7.6506 49 1 -2.7910 0.4899 8.9849 50 1 -0.2838 0.2149 4.1331 51 1 -0.1348 -1.3773 4.9177 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001690388840.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:10:03 Heat of formation + Delta-G solvation = -55.071899 kcal Electronic energy + Delta-G solvation = -29940.501043 eV Core-core repulsion = 25839.266167 eV Total energy + Delta-G solvation = -4101.234877 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.26799 -40.94033 -39.50096 -38.61349 -36.24725 -34.78459 -34.39103 -32.65413 -32.27279 -32.15262 -31.30681 -27.87526 -27.28347 -26.97782 -24.87439 -24.41725 -23.78526 -22.97638 -22.48970 -21.47672 -20.56229 -18.80029 -18.45653 -18.14321 -17.50914 -17.40047 -16.86569 -16.76342 -16.51072 -16.33111 -15.96937 -15.66010 -15.44231 -15.13545 -14.96788 -14.78227 -14.55811 -14.49452 -14.20864 -14.00270 -13.81389 -13.74095 -13.48111 -13.29991 -12.99975 -12.95967 -12.86586 -12.51002 -12.48003 -12.28317 -12.25073 -11.96907 -11.81106 -11.56615 -11.32772 -11.10405 -11.04513 -10.75864 -10.51717 -10.49209 -10.47247 -10.09634 -10.09197 -8.65643 -7.84795 -5.30583 0.13255 0.19234 1.48250 1.50459 1.56088 1.59290 1.90136 2.52841 2.70560 3.09151 3.30522 3.56664 3.59327 3.64637 3.76355 3.78181 3.95324 4.00227 4.01176 4.06473 4.09586 4.11745 4.19970 4.39658 4.41642 4.43416 4.58381 4.61979 4.68943 4.70794 4.77052 4.80762 4.88055 4.88940 4.92085 4.98361 5.01963 5.11979 5.21714 5.23994 5.34169 5.34352 5.38905 5.47870 5.58961 5.68731 5.74859 5.79951 6.00273 6.40936 6.54557 6.99416 7.16812 7.21115 7.88385 8.40923 9.21597 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.018455 B = 0.001860 C = 0.001733 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1516.873793 B =15048.428725 C =16150.475512 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.076 3.924 3 H 0.123 0.877 4 O -0.380 6.380 5 C 0.095 3.905 6 C -0.060 4.060 7 C -0.159 4.159 8 C 0.083 3.917 9 N -0.511 5.511 10 C 0.083 3.917 11 C -0.155 4.155 12 C 0.508 3.492 13 O -0.576 6.576 14 N -0.712 5.712 15 C 0.138 3.862 16 C -0.099 4.099 17 H 0.081 0.919 18 C -0.098 4.098 19 C -0.130 4.130 20 C 0.172 3.828 21 N -0.608 5.608 22 C -0.258 4.258 23 H 0.074 0.926 24 C -0.055 4.055 25 N -0.937 5.937 26 Si 0.966 3.034 27 H -0.286 1.286 28 H -0.298 1.298 29 H -0.266 1.266 30 C 0.152 3.848 31 H 0.051 0.949 32 H 0.086 0.914 33 H 0.094 0.906 34 H 0.090 0.910 35 H 0.081 0.919 36 H 0.149 0.851 37 H 0.176 0.824 38 H 0.178 0.822 39 H 0.157 0.843 40 H 0.414 0.586 41 H 0.071 0.929 42 H 0.053 0.947 43 H 0.052 0.948 44 H 0.079 0.921 45 H 0.067 0.933 46 H 0.055 0.945 47 H 0.051 0.949 48 H -0.010 1.010 49 H 0.248 0.752 50 H 0.061 0.939 51 H 0.003 0.997 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.545 3.121 -22.341 24.901 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.015 3.985 3 H 0.141 0.859 4 O -0.299 6.299 5 C 0.020 3.980 6 C -0.068 4.068 7 C -0.178 4.178 8 C -0.073 4.073 9 N -0.221 5.221 10 C -0.073 4.073 11 C -0.174 4.174 12 C 0.295 3.705 13 O -0.455 6.455 14 N -0.365 5.365 15 C 0.014 3.986 16 C -0.119 4.119 17 H 0.099 0.901 18 C -0.136 4.136 19 C -0.169 4.169 20 C 0.047 3.953 21 N -0.331 5.331 22 C -0.388 4.388 23 H 0.092 0.908 24 C -0.250 4.250 25 N -0.584 5.584 26 Si 0.794 3.206 27 H -0.213 1.213 28 H -0.224 1.224 29 H -0.191 1.191 30 C 0.026 3.974 31 H 0.071 0.929 32 H 0.105 0.895 33 H 0.113 0.887 34 H 0.108 0.892 35 H 0.099 0.901 36 H 0.167 0.833 37 H 0.193 0.807 38 H 0.195 0.805 39 H 0.174 0.826 40 H 0.251 0.749 41 H 0.089 0.911 42 H 0.071 0.929 43 H 0.071 0.929 44 H 0.098 0.902 45 H 0.086 0.914 46 H 0.074 0.926 47 H 0.069 0.931 48 H 0.008 0.992 49 H 0.057 0.943 50 H 0.080 0.920 51 H 0.021 0.979 Dipole moment (debyes) X Y Z Total from point charges 11.271 1.737 -22.993 25.666 hybrid contribution -1.427 1.258 1.482 2.412 sum 9.844 2.995 -21.511 23.845 Atomic orbital electron populations 1.22267 0.91925 1.03349 1.05123 1.22003 0.96044 0.97049 0.83422 0.85950 1.88084 1.86952 1.35358 1.19528 1.21619 1.01889 0.91298 0.83238 1.20271 0.94023 0.97175 0.95334 1.22346 0.96376 0.99886 0.99223 1.23152 1.00618 0.93027 0.90530 1.67690 1.04332 1.20583 1.29532 1.23210 0.91926 0.95449 0.96748 1.22365 1.02099 0.97638 0.95345 1.20995 0.79696 0.84423 0.85385 1.90699 1.39527 1.27961 1.87296 1.45923 1.53428 1.32367 1.04812 1.21258 0.98865 0.95628 0.82850 1.21709 0.96507 1.00271 0.93419 0.90077 1.21344 1.00164 0.98738 0.93399 1.21989 0.96765 1.00134 0.97965 1.20619 0.90253 0.95228 0.89226 1.44299 1.43714 1.43676 1.01448 1.19543 1.08709 1.06885 1.03671 0.90822 1.25836 0.99101 1.00342 0.99729 1.70207 1.41047 1.31868 1.15256 0.85300 0.78595 0.80304 0.76375 1.21276 1.22448 1.19089 1.21032 0.92593 0.95156 0.88594 0.92934 0.89516 0.88743 0.89228 0.90129 0.83302 0.80740 0.80493 0.82559 0.74913 0.91052 0.92904 0.92917 0.90212 0.91440 0.92610 0.93071 0.99160 0.94312 0.92028 0.97926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.42 9.42 71.98 0.68 -1.75 16 2 C 0.08 1.32 3.14 29.85 0.09 1.42 16 3 H 0.12 1.29 7.79 -2.38 -0.02 1.27 16 4 O -0.38 -8.12 9.50 -129.94 -1.23 -9.36 16 5 C 0.10 1.28 5.92 71.24 0.42 1.70 16 6 C -0.06 -0.97 5.55 -19.67 -0.11 -1.08 16 7 C -0.16 -2.57 9.82 22.36 0.22 -2.35 16 8 C 0.08 1.41 11.18 84.68 0.95 2.36 16 9 N -0.51 -10.18 10.36 -195.85 -2.03 -12.21 16 10 C 0.08 1.34 11.18 84.68 0.95 2.29 16 11 C -0.15 -2.29 9.82 22.36 0.22 -2.07 16 12 C 0.51 13.05 7.23 87.66 0.63 13.68 16 13 O -0.58 -20.55 16.50 15.98 0.26 -20.28 16 14 N -0.71 -16.23 5.22 -463.06 -2.42 -18.65 16 15 C 0.14 3.62 5.07 86.38 0.44 4.05 16 16 C -0.10 -2.88 2.37 -10.72 -0.03 -2.90 16 17 H 0.08 2.31 8.14 -2.39 -0.02 2.29 16 18 C -0.10 -2.92 5.17 30.62 0.16 -2.76 16 19 C -0.13 -4.56 6.08 30.66 0.19 -4.38 16 20 C 0.17 8.10 5.30 86.35 0.46 8.56 16 21 N -0.61 -28.88 2.99 -699.13 -2.09 -30.97 16 22 C -0.26 -13.38 9.58 84.04 0.81 -12.58 16 23 H 0.07 3.60 7.88 -2.91 -0.02 3.58 16 24 C -0.05 -2.98 4.92 84.86 0.42 -2.56 16 25 N -0.94 -54.69 11.20 21.65 0.24 -54.45 16 26 Si 0.97 43.19 29.59 68.60 2.03 45.22 16 27 H -0.29 -12.62 7.11 99.48 0.71 -11.91 16 28 H -0.30 -13.60 7.11 99.48 0.71 -12.89 16 29 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16 30 C 0.15 5.71 5.60 86.36 0.48 6.19 16 31 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 32 H 0.09 1.09 7.57 -2.38 -0.02 1.07 16 33 H 0.09 0.89 7.87 -2.39 -0.02 0.87 16 34 H 0.09 0.75 7.83 -2.39 -0.02 0.73 16 35 H 0.08 0.80 8.04 -2.39 -0.02 0.78 16 36 H 0.15 1.88 8.06 -2.91 -0.02 1.86 16 37 H 0.18 2.04 8.06 -2.91 -0.02 2.02 16 38 H 0.18 1.85 8.06 -2.91 -0.02 1.83 16 39 H 0.16 1.55 8.06 -2.91 -0.02 1.52 16 40 H 0.41 7.62 7.12 -92.71 -0.66 6.96 16 41 H 0.07 1.81 8.14 -2.38 -0.02 1.79 16 42 H 0.05 1.56 8.14 -2.38 -0.02 1.54 16 43 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 44 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 45 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 46 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 47 H 0.05 2.74 6.06 -2.39 -0.01 2.73 16 48 H -0.01 -0.50 8.14 -2.39 -0.02 -0.52 16 49 H 0.25 14.08 8.31 -92.71 -0.77 13.31 16 50 H 0.06 2.12 7.14 -2.38 -0.02 2.11 16 51 H 0.00 0.11 8.14 -2.39 -0.02 0.09 16 Total: -1.00 -75.78 413.31 1.99 -73.80 By element: Atomic # 1 Polarization: 18.82 SS G_CDS: 0.25 Total: 19.07 kcal Atomic # 6 Polarization: 0.85 SS G_CDS: 6.97 Total: 7.82 kcal Atomic # 7 Polarization: -109.98 SS G_CDS: -6.30 Total: -116.27 kcal Atomic # 8 Polarization: -28.67 SS G_CDS: -0.97 Total: -29.64 kcal Atomic # 14 Polarization: 43.19 SS G_CDS: 2.03 Total: 45.22 kcal Total: -75.78 1.99 -73.80 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690388840.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.726 kcal (2) G-P(sol) polarization free energy of solvation -75.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.987 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.798 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds