Wall clock time and date at job start Wed Apr 1 2020 05:10:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08996 * 109.47000 * 2 1 4 4 O 1.42907 * 109.47063 * 119.99756 * 2 1 3 5 5 C 1.42897 * 114.00121 * 270.00156 * 4 2 1 6 6 C 1.50701 * 109.47184 * 179.97438 * 5 4 2 7 7 C 1.38657 * 120.78975 * 269.72304 * 6 5 4 8 8 C 1.38204 * 119.15983 * 179.75438 * 7 6 5 9 9 N 1.31867 * 120.76207 * 0.53297 * 8 7 6 10 10 C 1.31868 * 121.72947 * 359.73398 * 9 8 7 11 11 C 1.38205 * 120.76360 * 359.97438 * 10 9 8 12 12 C 1.50696 * 109.47225 * 239.99846 * 2 1 3 13 13 O 1.21282 * 120.00250 * 244.99800 * 12 2 1 14 14 N 1.34777 * 119.99906 * 65.00527 * 12 2 1 15 15 C 1.46507 * 119.99806 * 180.27340 * 14 12 2 16 16 C 1.52999 * 109.46987 * 179.72178 * 15 14 12 17 17 H 1.09009 * 109.49612 * 305.00160 * 16 15 14 18 18 C 1.53041 * 109.49917 * 184.93992 * 16 15 14 19 19 C 1.53033 * 109.54079 * 178.71752 * 18 16 15 20 20 C 1.53196 * 109.34131 * 61.30867 * 19 18 16 21 21 N 1.46919 * 108.77811 * 305.38712 * 20 19 18 22 22 C 1.36943 * 120.62995 * 233.62971 * 21 20 19 23 23 H 1.07998 * 120.00029 * 152.59289 * 22 21 20 24 24 C 1.38817 * 119.99558 * 332.59930 * 22 21 20 25 25 N 1.31621 * 119.99694 * 159.36095 * 24 22 21 26 26 Si 1.86804 * 120.00048 * 339.36015 * 24 22 21 27 27 H 1.48503 * 109.46922 * 92.90492 * 26 24 22 28 28 H 1.48497 * 109.46661 * 212.90341 * 26 24 22 29 29 H 1.48496 * 109.47088 * 332.90245 * 26 24 22 30 30 C 1.46924 * 118.74471 * 53.60057 * 21 20 19 31 31 H 1.08996 * 109.47000 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.47183 * 300.00396 * 1 2 3 33 33 H 1.08999 * 109.46657 * 60.00063 * 1 2 3 34 34 H 1.08996 * 109.47059 * 299.99912 * 5 4 2 35 35 H 1.09005 * 109.46734 * 59.99882 * 5 4 2 36 36 H 1.07998 * 120.41436 * 359.97438 * 7 6 5 37 37 H 1.07993 * 119.61503 * 180.29109 * 8 7 6 38 38 H 1.07997 * 119.61816 * 180.02562 * 10 9 8 39 39 H 1.08001 * 120.42139 * 180.02562 * 11 10 9 40 40 H 0.96996 * 119.99865 * 359.97438 * 14 12 2 41 41 H 1.08998 * 109.47354 * 299.72318 * 15 14 12 42 42 H 1.09004 * 109.46754 * 59.72606 * 15 14 12 43 43 H 1.09005 * 109.45305 * 298.70084 * 18 16 15 44 44 H 1.08992 * 109.45933 * 58.65966 * 18 16 15 45 45 H 1.09001 * 109.46811 * 301.36077 * 19 18 16 46 46 H 1.08996 * 109.49563 * 181.27994 * 19 18 16 47 47 H 1.08999 * 109.58839 * 185.59411 * 20 19 18 48 48 H 1.09008 * 109.69995 * 65.24174 * 20 19 18 49 49 H 0.97001 * 119.99858 * 179.97438 * 25 24 22 50 50 H 1.09000 * 109.59013 * 186.60588 * 30 21 20 51 51 H 1.09003 * 109.69987 * 66.25367 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0063 -0.6736 1.1669 5 6 2.2001 0.1829 2.2941 6 6 2.7002 -0.6284 3.4615 7 6 1.8128 -1.2038 4.3580 8 6 2.3082 -1.9455 5.4138 9 7 3.6073 -2.0994 5.5789 10 6 4.4804 -1.5623 4.7493 11 6 4.0588 -0.8126 3.6675 12 6 2.0323 -0.7104 -1.2304 13 8 2.6530 -1.7467 -1.1214 14 7 1.7920 -0.1941 -2.4520 15 6 2.2752 -0.8880 -3.6484 16 6 1.8657 -0.1007 -4.8948 17 1 0.7868 0.0548 -4.8887 18 6 2.2616 -0.8854 -6.1476 19 6 1.8238 -0.1137 -7.3946 20 6 2.5353 1.2426 -7.4277 21 7 2.2766 1.9434 -6.1626 22 6 1.7641 3.2133 -6.1606 23 1 1.1769 3.5573 -5.3220 24 6 1.9991 4.0583 -7.2366 25 7 1.2114 5.0917 -7.4461 26 14 3.4335 3.7287 -8.3871 27 1 2.9698 2.9059 -9.5331 28 1 3.9716 5.0184 -8.8892 29 1 4.4991 2.9998 -7.6534 30 6 2.5777 1.2558 -4.8996 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5139 0.8899 33 1 -0.3632 0.5138 -0.8900 34 1 2.9319 0.9513 2.0451 35 1 1.2537 0.6547 2.5588 36 1 0.7478 -1.0771 4.2309 37 1 1.6234 -2.4009 6.1138 38 1 5.5369 -1.7106 4.9168 39 1 4.7786 -0.3755 2.9913 40 1 1.2954 0.6345 -2.5391 41 1 3.3616 -0.9666 -3.6090 42 1 1.8399 -1.8864 -3.6901 43 1 3.3432 -1.0195 -6.1653 44 1 1.7751 -1.8606 -6.1341 45 1 0.7454 0.0419 -7.3655 46 1 2.0858 -0.6839 -8.2858 47 1 2.1532 1.8355 -8.2587 48 1 3.6081 1.0919 -7.5492 49 1 1.3759 5.6824 -8.1977 50 1 2.2235 1.8574 -4.0625 51 1 3.6534 1.1041 -4.8111 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001690388841.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:10:08 Heat of formation + Delta-G solvation = -28.612309 kcal Electronic energy + Delta-G solvation = -29991.487987 eV Core-core repulsion = 25891.400484 eV Total energy + Delta-G solvation = -4100.087503 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -40.57754 -40.04296 -38.42593 -37.68981 -34.99897 -33.83937 -33.12544 -31.76036 -31.56171 -30.91900 -30.41038 -27.26985 -26.23474 -25.34038 -24.04327 -23.81000 -22.37052 -22.05765 -21.50040 -20.43000 -19.41167 -17.81086 -17.45053 -16.86641 -16.80184 -16.59909 -15.96810 -15.77219 -15.54810 -15.38946 -15.06967 -14.43005 -14.25646 -14.12124 -13.97376 -13.92590 -13.52202 -13.44635 -13.26859 -13.06571 -12.82722 -12.62258 -12.49473 -12.30726 -12.17206 -11.92411 -11.69017 -11.59984 -11.53289 -10.85971 -10.64638 -10.58465 -10.32609 -10.19504 -10.10962 -9.97947 -9.84249 -9.71031 -9.60242 -9.49477 -9.47746 -9.04969 -8.66951 -7.04110 -6.01607 -3.37593 0.76350 0.79398 2.55365 2.71799 3.27813 3.40719 3.44542 3.47296 3.74739 4.12153 4.29575 4.30552 4.47573 4.51081 4.62740 4.66896 4.72396 4.76352 4.78802 4.92074 4.97047 5.10057 5.17154 5.23035 5.25405 5.27484 5.35431 5.37899 5.42686 5.57460 5.58500 5.72949 5.76111 5.78448 5.93534 5.96956 6.05408 6.07196 6.24542 6.32474 6.32730 6.38413 6.50527 6.51532 6.62012 6.66086 6.68151 6.91544 7.46650 7.61102 7.88735 8.17544 8.24988 8.86745 9.65481 10.03534 11.14126 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.018757 B = 0.001866 C = 0.001814 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1492.455043 B =14999.666540 C =15431.107035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.069 3.931 3 H 0.090 0.910 4 O -0.349 6.349 5 C 0.097 3.903 6 C -0.043 4.043 7 C -0.152 4.152 8 C 0.095 3.905 9 N -0.483 5.483 10 C 0.096 3.904 11 C -0.149 4.149 12 C 0.513 3.487 13 O -0.525 6.525 14 N -0.722 5.722 15 C 0.129 3.871 16 C -0.119 4.119 17 H 0.078 0.922 18 C -0.101 4.101 19 C -0.134 4.134 20 C 0.123 3.877 21 N -0.605 5.605 22 C -0.262 4.262 23 H 0.085 0.915 24 C 0.024 3.976 25 N -0.907 5.907 26 Si 0.884 3.116 27 H -0.288 1.288 28 H -0.303 1.303 29 H -0.271 1.271 30 C 0.156 3.844 31 H 0.071 0.929 32 H 0.069 0.931 33 H 0.077 0.923 34 H 0.066 0.934 35 H 0.066 0.934 36 H 0.136 0.864 37 H 0.157 0.843 38 H 0.158 0.842 39 H 0.137 0.863 40 H 0.404 0.596 41 H 0.067 0.933 42 H 0.064 0.936 43 H 0.058 0.942 44 H 0.054 0.946 45 H 0.064 0.936 46 H 0.055 0.945 47 H 0.072 0.928 48 H 0.025 0.975 49 H 0.263 0.737 50 H 0.059 0.941 51 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.186 -11.143 19.754 22.681 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.008 3.992 3 H 0.108 0.892 4 O -0.267 6.267 5 C 0.021 3.979 6 C -0.051 4.051 7 C -0.171 4.171 8 C -0.062 4.062 9 N -0.193 5.193 10 C -0.061 4.061 11 C -0.169 4.169 12 C 0.298 3.702 13 O -0.400 6.400 14 N -0.375 5.375 15 C 0.005 3.995 16 C -0.140 4.140 17 H 0.097 0.903 18 C -0.139 4.139 19 C -0.173 4.173 20 C -0.002 4.002 21 N -0.329 5.329 22 C -0.390 4.390 23 H 0.102 0.898 24 C -0.175 4.175 25 N -0.550 5.550 26 Si 0.714 3.286 27 H -0.216 1.216 28 H -0.232 1.232 29 H -0.196 1.196 30 C 0.030 3.970 31 H 0.090 0.910 32 H 0.088 0.912 33 H 0.096 0.904 34 H 0.084 0.916 35 H 0.084 0.916 36 H 0.154 0.846 37 H 0.174 0.826 38 H 0.175 0.825 39 H 0.155 0.845 40 H 0.239 0.761 41 H 0.085 0.915 42 H 0.083 0.917 43 H 0.077 0.923 44 H 0.073 0.927 45 H 0.083 0.917 46 H 0.073 0.927 47 H 0.090 0.910 48 H 0.042 0.958 49 H 0.073 0.927 50 H 0.078 0.922 51 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges 0.578 -12.409 20.451 23.928 hybrid contribution 0.150 1.143 -1.610 1.980 sum 0.728 -11.265 18.841 21.964 Atomic orbital electron populations 1.22241 0.93247 1.03912 1.03478 1.21948 0.95308 0.96514 0.85418 0.89214 1.88116 1.86629 1.33533 1.18462 1.21433 1.00274 0.91657 0.84575 1.19969 0.93699 0.96737 0.94737 1.22089 1.01006 0.98253 0.95790 1.22775 0.91990 0.95371 0.96081 1.67668 1.03382 1.19636 1.28576 1.22792 0.99748 0.93066 0.90451 1.22131 0.95914 0.99767 0.99064 1.20260 0.80081 0.85624 0.84278 1.90721 1.39548 1.23216 1.86500 1.45998 1.58038 1.28017 1.05475 1.21450 0.99541 0.95521 0.82959 1.21952 1.01829 0.97402 0.92783 0.90324 1.21343 1.00745 0.97511 0.94309 1.21988 1.01406 0.97484 0.96421 1.21358 0.96624 0.92178 0.90043 1.44325 1.75172 1.13932 0.99434 1.18878 1.26072 0.87282 1.06737 0.89777 1.25275 0.98246 0.95788 0.98235 1.69834 1.37016 1.17714 1.30457 0.86941 0.84963 0.75917 0.80743 1.21617 1.23174 1.19620 1.20925 0.96039 0.90599 0.89466 0.91040 0.91184 0.90430 0.91557 0.91580 0.84576 0.82560 0.82491 0.84474 0.76101 0.91480 0.91739 0.92315 0.92729 0.91702 0.92664 0.91025 0.95762 0.92740 0.92249 0.95847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.32 9.48 37.16 0.35 -0.97 16 2 C 0.07 0.68 3.13 -27.88 -0.09 0.60 16 3 H 0.09 0.68 7.79 -51.93 -0.40 0.27 16 4 O -0.35 -3.99 9.51 -55.09 -0.52 -4.52 16 5 C 0.10 0.78 5.92 36.01 0.21 1.00 16 6 C -0.04 -0.38 5.55 -104.32 -0.58 -0.96 16 7 C -0.15 -1.21 9.82 -39.44 -0.39 -1.60 16 8 C 0.09 0.79 11.18 -17.55 -0.20 0.60 16 9 N -0.48 -4.89 10.36 -13.26 -0.14 -5.03 16 10 C 0.10 0.85 11.18 -17.55 -0.20 0.65 16 11 C -0.15 -1.29 9.82 -39.44 -0.39 -1.68 16 12 C 0.51 6.75 7.18 -10.99 -0.08 6.67 16 13 O -0.52 -9.20 16.51 -14.30 -0.24 -9.44 16 14 N -0.72 -8.54 5.29 -60.29 -0.32 -8.86 16 15 C 0.13 1.68 5.07 -4.04 -0.02 1.66 16 16 C -0.12 -1.72 2.37 -90.50 -0.21 -1.94 16 17 H 0.08 1.18 8.14 -51.92 -0.42 0.75 16 18 C -0.10 -1.45 5.17 -26.69 -0.14 -1.59 16 19 C -0.13 -2.23 6.08 -26.61 -0.16 -2.39 16 20 C 0.12 2.58 4.21 -3.71 -0.02 2.57 16 21 N -0.61 -13.55 2.77 -172.32 -0.48 -14.02 16 22 C -0.26 -6.95 10.04 -15.05 -0.15 -7.10 16 23 H 0.08 2.35 8.06 -52.49 -0.42 1.93 16 24 C 0.02 0.66 5.23 -17.43 -0.09 0.57 16 25 N -0.91 -27.01 13.97 55.49 0.78 -26.23 16 26 Si 0.88 21.92 24.34 -169.99 -4.14 17.79 16 27 H -0.29 -6.92 6.62 56.52 0.37 -6.54 16 28 H -0.30 -7.69 7.11 56.52 0.40 -7.29 16 29 H -0.27 -6.64 6.64 56.52 0.38 -6.27 16 30 C 0.16 2.79 5.60 -3.71 -0.02 2.76 16 31 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.07 0.42 7.87 -51.93 -0.41 0.01 16 33 H 0.08 0.52 7.92 -51.93 -0.41 0.11 16 34 H 0.07 0.45 8.05 -51.93 -0.42 0.04 16 35 H 0.07 0.39 7.83 -51.93 -0.41 -0.01 16 36 H 0.14 0.78 8.06 -52.49 -0.42 0.36 16 37 H 0.16 0.87 8.06 -52.49 -0.42 0.45 16 38 H 0.16 0.98 8.06 -52.49 -0.42 0.56 16 39 H 0.14 0.98 8.06 -52.49 -0.42 0.56 16 40 H 0.40 4.10 7.48 -40.82 -0.31 3.80 16 41 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 42 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 43 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 44 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 45 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 46 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 47 H 0.07 1.66 4.50 -51.93 -0.23 1.43 16 48 H 0.02 0.51 7.07 -51.92 -0.37 0.14 16 49 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 50 H 0.06 1.01 7.14 -51.93 -0.37 0.64 16 51 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 LS Contribution 407.65 15.07 6.14 6.14 Total: -1.00 -34.87 407.65 -9.51 -44.37 By element: Atomic # 1 Polarization: 9.39 SS G_CDS: -8.43 Total: 0.95 kcal Atomic # 6 Polarization: 1.00 SS G_CDS: -2.16 Total: -1.16 kcal Atomic # 7 Polarization: -53.98 SS G_CDS: -0.16 Total: -54.14 kcal Atomic # 8 Polarization: -13.20 SS G_CDS: -0.76 Total: -13.96 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -4.14 Total: 17.79 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -34.87 -9.51 -44.37 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690388841.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.760 kcal (2) G-P(sol) polarization free energy of solvation -34.865 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.372 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.612 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds