Wall clock time and date at job start Wed Apr 1 2020 05:10:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08996 * 109.47000 * 2 1 4 4 O 1.42907 * 109.47063 * 119.99756 * 2 1 3 5 5 C 1.42897 * 114.00121 * 270.00156 * 4 2 1 6 6 C 1.50701 * 109.47184 * 179.97438 * 5 4 2 7 7 C 1.38657 * 120.78975 * 269.72304 * 6 5 4 8 8 C 1.38204 * 119.15983 * 179.75438 * 7 6 5 9 9 N 1.31867 * 120.76207 * 0.53297 * 8 7 6 10 10 C 1.31868 * 121.72947 * 359.73398 * 9 8 7 11 11 C 1.38205 * 120.76360 * 359.97438 * 10 9 8 12 12 C 1.50696 * 109.47225 * 239.99846 * 2 1 3 13 13 O 1.21282 * 120.00250 * 244.99800 * 12 2 1 14 14 N 1.34777 * 119.99906 * 65.00527 * 12 2 1 15 15 C 1.46507 * 119.99806 * 180.27340 * 14 12 2 16 16 C 1.52999 * 109.46987 * 179.72178 * 15 14 12 17 17 H 1.09009 * 109.49612 * 305.00160 * 16 15 14 18 18 C 1.53041 * 109.49917 * 184.93992 * 16 15 14 19 19 C 1.53033 * 109.54079 * 178.71752 * 18 16 15 20 20 C 1.53196 * 109.34131 * 61.30867 * 19 18 16 21 21 N 1.46919 * 108.77811 * 305.38712 * 20 19 18 22 22 C 1.36943 * 120.62995 * 233.62971 * 21 20 19 23 23 H 1.07998 * 120.00029 * 152.59289 * 22 21 20 24 24 C 1.38817 * 119.99558 * 332.59930 * 22 21 20 25 25 N 1.31621 * 119.99694 * 159.36095 * 24 22 21 26 26 Si 1.86804 * 120.00048 * 339.36015 * 24 22 21 27 27 H 1.48503 * 109.46922 * 92.90492 * 26 24 22 28 28 H 1.48497 * 109.46661 * 212.90341 * 26 24 22 29 29 H 1.48496 * 109.47088 * 332.90245 * 26 24 22 30 30 C 1.46924 * 118.74471 * 53.60057 * 21 20 19 31 31 H 1.08996 * 109.47000 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.47183 * 300.00396 * 1 2 3 33 33 H 1.08999 * 109.46657 * 60.00063 * 1 2 3 34 34 H 1.08996 * 109.47059 * 299.99912 * 5 4 2 35 35 H 1.09005 * 109.46734 * 59.99882 * 5 4 2 36 36 H 1.07998 * 120.41436 * 359.97438 * 7 6 5 37 37 H 1.07993 * 119.61503 * 180.29109 * 8 7 6 38 38 H 1.07997 * 119.61816 * 180.02562 * 10 9 8 39 39 H 1.08001 * 120.42139 * 180.02562 * 11 10 9 40 40 H 0.96996 * 119.99865 * 359.97438 * 14 12 2 41 41 H 1.08998 * 109.47354 * 299.72318 * 15 14 12 42 42 H 1.09004 * 109.46754 * 59.72606 * 15 14 12 43 43 H 1.09005 * 109.45305 * 298.70084 * 18 16 15 44 44 H 1.08992 * 109.45933 * 58.65966 * 18 16 15 45 45 H 1.09001 * 109.46811 * 301.36077 * 19 18 16 46 46 H 1.08996 * 109.49563 * 181.27994 * 19 18 16 47 47 H 1.08999 * 109.58839 * 185.59411 * 20 19 18 48 48 H 1.09008 * 109.69995 * 65.24174 * 20 19 18 49 49 H 0.97001 * 119.99858 * 179.97438 * 25 24 22 50 50 H 1.09000 * 109.59013 * 186.60588 * 30 21 20 51 51 H 1.09003 * 109.69987 * 66.25367 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0063 -0.6736 1.1669 5 6 2.2001 0.1829 2.2941 6 6 2.7002 -0.6284 3.4615 7 6 1.8128 -1.2038 4.3580 8 6 2.3082 -1.9455 5.4138 9 7 3.6073 -2.0994 5.5789 10 6 4.4804 -1.5623 4.7493 11 6 4.0588 -0.8126 3.6675 12 6 2.0323 -0.7104 -1.2304 13 8 2.6530 -1.7467 -1.1214 14 7 1.7920 -0.1941 -2.4520 15 6 2.2752 -0.8880 -3.6484 16 6 1.8657 -0.1007 -4.8948 17 1 0.7868 0.0548 -4.8887 18 6 2.2616 -0.8854 -6.1476 19 6 1.8238 -0.1137 -7.3946 20 6 2.5353 1.2426 -7.4277 21 7 2.2766 1.9434 -6.1626 22 6 1.7641 3.2133 -6.1606 23 1 1.1769 3.5573 -5.3220 24 6 1.9991 4.0583 -7.2366 25 7 1.2114 5.0917 -7.4461 26 14 3.4335 3.7287 -8.3871 27 1 2.9698 2.9059 -9.5331 28 1 3.9716 5.0184 -8.8892 29 1 4.4991 2.9998 -7.6534 30 6 2.5777 1.2558 -4.8996 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5139 0.8899 33 1 -0.3632 0.5138 -0.8900 34 1 2.9319 0.9513 2.0451 35 1 1.2537 0.6547 2.5588 36 1 0.7478 -1.0771 4.2309 37 1 1.6234 -2.4009 6.1138 38 1 5.5369 -1.7106 4.9168 39 1 4.7786 -0.3755 2.9913 40 1 1.2954 0.6345 -2.5391 41 1 3.3616 -0.9666 -3.6090 42 1 1.8399 -1.8864 -3.6901 43 1 3.3432 -1.0195 -6.1653 44 1 1.7751 -1.8606 -6.1341 45 1 0.7454 0.0419 -7.3655 46 1 2.0858 -0.6839 -8.2858 47 1 2.1532 1.8355 -8.2587 48 1 3.6081 1.0919 -7.5492 49 1 1.3759 5.6824 -8.1977 50 1 2.2235 1.8574 -4.0625 51 1 3.6534 1.1041 -4.8111 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001690388841.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:10:07 Heat of formation + Delta-G solvation = -51.695362 kcal Electronic energy + Delta-G solvation = -29992.488943 eV Core-core repulsion = 25891.400484 eV Total energy + Delta-G solvation = -4101.088459 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -41.27618 -40.95306 -39.67736 -38.65603 -36.31916 -34.79873 -34.41848 -32.97344 -32.52718 -32.15819 -31.50534 -27.88742 -27.52729 -26.98852 -24.94004 -24.42310 -23.66534 -23.00937 -22.82197 -21.48214 -20.72709 -18.81867 -18.52337 -18.15916 -17.51456 -17.43774 -17.21516 -16.76234 -16.57087 -16.50665 -16.03868 -15.60265 -15.47080 -15.24395 -15.05287 -14.84398 -14.78634 -14.55610 -14.23233 -14.19690 -13.97446 -13.76071 -13.57824 -13.34777 -13.26106 -13.17002 -12.96841 -12.55595 -12.50497 -12.30286 -12.16777 -12.09588 -11.68848 -11.58781 -11.33565 -11.25186 -11.08102 -10.76318 -10.65654 -10.50356 -10.47850 -10.10233 -10.09833 -8.91190 -8.15341 -5.45865 0.12637 0.18747 1.29896 1.41626 1.49546 1.56274 1.87979 2.42384 2.70063 3.06427 3.08389 3.32832 3.56571 3.61820 3.75363 3.77489 3.86248 3.95213 3.96171 4.02968 4.08008 4.11077 4.19337 4.25566 4.38874 4.39637 4.42343 4.54683 4.64962 4.68574 4.70655 4.77664 4.79360 4.83542 4.85460 4.87582 4.97815 5.00164 5.09204 5.15066 5.20588 5.26541 5.29880 5.33656 5.42607 5.58417 5.74324 5.88344 5.98232 6.14387 6.52704 6.93279 6.98948 7.19841 7.64330 8.05713 9.04039 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.018757 B = 0.001866 C = 0.001814 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1492.455043 B =14999.666540 C =15431.107035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.072 3.928 3 H 0.115 0.885 4 O -0.379 6.379 5 C 0.095 3.905 6 C -0.060 4.060 7 C -0.153 4.153 8 C 0.084 3.916 9 N -0.511 5.511 10 C 0.083 3.917 11 C -0.160 4.160 12 C 0.510 3.490 13 O -0.574 6.574 14 N -0.714 5.714 15 C 0.138 3.862 16 C -0.103 4.103 17 H 0.077 0.923 18 C -0.099 4.099 19 C -0.126 4.126 20 C 0.115 3.885 21 N -0.619 5.619 22 C -0.242 4.242 23 H 0.061 0.939 24 C -0.035 4.035 25 N -0.955 5.955 26 Si 0.941 3.059 27 H -0.277 1.277 28 H -0.314 1.314 29 H -0.265 1.265 30 C 0.151 3.849 31 H 0.056 0.944 32 H 0.092 0.908 33 H 0.087 0.913 34 H 0.077 0.923 35 H 0.091 0.909 36 H 0.159 0.841 37 H 0.180 0.820 38 H 0.175 0.825 39 H 0.147 0.853 40 H 0.413 0.587 41 H 0.060 0.940 42 H 0.070 0.930 43 H 0.064 0.936 44 H 0.082 0.918 45 H 0.056 0.944 46 H 0.080 0.920 47 H 0.046 0.954 48 H 0.028 0.972 49 H 0.260 0.740 50 H 0.062 0.938 51 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.340 -12.451 20.277 23.797 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.011 3.989 3 H 0.133 0.867 4 O -0.298 6.298 5 C 0.019 3.981 6 C -0.068 4.068 7 C -0.173 4.173 8 C -0.073 4.073 9 N -0.221 5.221 10 C -0.073 4.073 11 C -0.180 4.180 12 C 0.297 3.703 13 O -0.453 6.453 14 N -0.367 5.367 15 C 0.014 3.986 16 C -0.123 4.123 17 H 0.095 0.905 18 C -0.137 4.137 19 C -0.165 4.165 20 C -0.010 4.010 21 N -0.343 5.343 22 C -0.372 4.372 23 H 0.079 0.921 24 C -0.230 4.230 25 N -0.601 5.601 26 Si 0.771 3.229 27 H -0.204 1.204 28 H -0.243 1.243 29 H -0.190 1.190 30 C 0.026 3.974 31 H 0.076 0.924 32 H 0.110 0.890 33 H 0.106 0.894 34 H 0.095 0.905 35 H 0.109 0.891 36 H 0.176 0.824 37 H 0.197 0.803 38 H 0.192 0.808 39 H 0.164 0.836 40 H 0.250 0.750 41 H 0.079 0.921 42 H 0.088 0.912 43 H 0.083 0.917 44 H 0.101 0.899 45 H 0.075 0.925 46 H 0.098 0.902 47 H 0.064 0.936 48 H 0.046 0.954 49 H 0.069 0.931 50 H 0.081 0.919 51 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges 0.426 -13.743 20.981 25.085 hybrid contribution 0.174 1.517 -1.687 2.276 sum 0.601 -12.226 19.294 22.849 Atomic orbital electron populations 1.22234 0.91492 1.03505 1.05114 1.22032 0.96465 0.96842 0.83576 0.86698 1.88076 1.86992 1.35217 1.19476 1.21609 1.01847 0.91293 0.83339 1.20261 0.94000 0.97168 0.95352 1.22366 1.02103 0.97565 0.95256 1.23228 0.91898 0.95398 0.96729 1.67687 1.04369 1.20579 1.29447 1.23131 1.00614 0.93059 0.90472 1.22338 0.96441 0.99943 0.99284 1.20923 0.79024 0.85040 0.85336 1.90696 1.41905 1.25492 1.87217 1.45952 1.57571 1.28125 1.05086 1.21282 0.99186 0.95558 0.82622 1.21732 1.01143 0.95515 0.93895 0.90471 1.21367 1.01440 0.98285 0.92657 1.21895 1.00315 0.95442 0.98872 1.21433 0.97166 0.93948 0.88449 1.44477 1.75259 1.12951 1.01629 1.18896 1.24201 0.88846 1.05211 0.92133 1.25851 1.00475 0.96192 1.00479 1.69951 1.38945 1.19456 1.31776 0.85996 0.82141 0.75243 0.79478 1.20433 1.24340 1.18991 1.21112 0.96576 0.92078 0.87590 0.92441 0.88961 0.89397 0.90531 0.89143 0.82373 0.80334 0.80822 0.83563 0.74984 0.92124 0.91151 0.91706 0.89896 0.92495 0.90180 0.93612 0.95395 0.93115 0.91926 0.95611 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.13 9.48 71.98 0.68 -1.45 16 2 C 0.07 1.26 3.13 29.85 0.09 1.35 16 3 H 0.12 1.40 7.79 -2.39 -0.02 1.38 16 4 O -0.38 -8.07 9.51 -129.99 -1.24 -9.30 16 5 C 0.09 1.34 5.92 71.24 0.42 1.76 16 6 C -0.06 -0.99 5.55 -19.67 -0.11 -1.10 16 7 C -0.15 -2.22 9.82 22.36 0.22 -2.00 16 8 C 0.08 1.32 11.18 84.68 0.95 2.27 16 9 N -0.51 -10.16 10.36 -195.85 -2.03 -12.19 16 10 C 0.08 1.45 11.18 84.68 0.95 2.40 16 11 C -0.16 -2.71 9.82 22.36 0.22 -2.49 16 12 C 0.51 12.69 7.18 87.66 0.63 13.32 16 13 O -0.57 -19.83 16.51 15.95 0.26 -19.57 16 14 N -0.71 -15.48 5.29 -463.05 -2.45 -17.93 16 15 C 0.14 3.26 5.07 86.38 0.44 3.70 16 16 C -0.10 -2.70 2.37 -10.72 -0.03 -2.73 16 17 H 0.08 2.10 8.14 -2.38 -0.02 2.09 16 18 C -0.10 -2.51 5.17 30.62 0.16 -2.35 16 19 C -0.13 -3.85 6.08 30.67 0.19 -3.66 16 20 C 0.11 4.60 4.21 86.37 0.36 4.97 16 21 N -0.62 -27.01 2.77 -699.09 -1.94 -28.95 16 22 C -0.24 -12.91 10.04 84.03 0.84 -12.06 16 23 H 0.06 3.45 8.06 -2.91 -0.02 3.43 16 24 C -0.04 -1.99 5.23 84.86 0.44 -1.55 16 25 N -0.95 -58.22 13.97 21.65 0.30 -57.92 16 26 Si 0.94 45.69 24.34 68.60 1.67 47.36 16 27 H -0.28 -12.80 6.62 99.48 0.66 -12.14 16 28 H -0.31 -15.64 7.11 99.48 0.71 -14.94 16 29 H -0.27 -12.41 6.64 99.48 0.66 -11.75 16 30 C 0.15 5.13 5.60 86.36 0.48 5.61 16 31 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 32 H 0.09 0.79 7.87 -2.39 -0.02 0.77 16 33 H 0.09 0.94 7.92 -2.39 -0.02 0.92 16 34 H 0.08 0.89 8.05 -2.39 -0.02 0.87 16 35 H 0.09 0.80 7.83 -2.38 -0.02 0.78 16 36 H 0.16 1.45 8.06 -2.91 -0.02 1.43 16 37 H 0.18 1.75 8.06 -2.91 -0.02 1.73 16 38 H 0.17 2.13 8.06 -2.91 -0.02 2.11 16 39 H 0.15 2.04 8.06 -2.91 -0.02 2.01 16 40 H 0.41 7.46 7.48 -92.71 -0.69 6.76 16 41 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 42 H 0.07 1.65 8.14 -2.38 -0.02 1.63 16 43 H 0.06 1.60 8.14 -2.38 -0.02 1.58 16 44 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 45 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 46 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 47 H 0.05 2.07 4.50 -2.39 -0.01 2.06 16 48 H 0.03 1.11 7.07 -2.38 -0.02 1.09 16 49 H 0.26 15.19 8.31 -92.71 -0.77 14.41 16 50 H 0.06 2.05 7.14 -2.39 -0.02 2.03 16 51 H 0.03 0.88 8.14 -2.39 -0.02 0.86 16 Total: -1.00 -77.10 407.65 1.66 -75.44 By element: Atomic # 1 Polarization: 16.94 SS G_CDS: 0.13 Total: 17.07 kcal Atomic # 6 Polarization: -0.95 SS G_CDS: 6.94 Total: 6.00 kcal Atomic # 7 Polarization: -110.88 SS G_CDS: -6.11 Total: -116.99 kcal Atomic # 8 Polarization: -27.90 SS G_CDS: -0.97 Total: -28.87 kcal Atomic # 14 Polarization: 45.69 SS G_CDS: 1.67 Total: 47.36 kcal Total: -77.10 1.66 -75.44 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690388841.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.745 kcal (2) G-P(sol) polarization free energy of solvation -77.097 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.352 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.441 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.695 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds