Wall clock time and date at job start Wed Apr 1 2020 04:36:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.46940 * 2 1 4 4 O 1.42897 * 109.47166 * 239.99869 * 2 1 3 5 5 C 1.35675 * 117.00279 * 90.00244 * 4 2 1 6 6 C 1.38914 * 119.68349 * 180.02562 * 5 4 2 7 7 C 1.38380 * 119.11175 * 179.97438 * 6 5 4 8 8 C 1.38824 * 118.48386 * 359.97438 * 7 6 5 9 9 C 1.38048 * 119.29122 * 0.25552 * 8 7 6 10 10 N 1.31968 * 120.83298 * 359.45107 * 9 8 7 11 11 C 1.50703 * 109.46944 * 119.99313 * 2 1 3 12 12 O 1.21280 * 119.99650 * 108.64942 * 11 2 1 13 13 N 1.34774 * 119.99917 * 288.64851 * 11 2 1 14 14 C 1.46928 * 120.62644 * 184.56117 * 13 11 2 15 15 C 1.53622 * 108.54451 * 126.37049 * 14 13 11 16 16 C 1.53040 * 109.24347 * 54.85050 * 15 14 13 17 17 C 1.52995 * 109.44869 * 178.50056 * 16 15 14 18 18 N 1.46503 * 109.47028 * 295.06461 * 17 16 15 19 19 C 1.46505 * 120.00081 * 90.00181 * 18 17 16 20 20 C 1.36938 * 119.99903 * 269.99730 * 18 17 16 21 21 H 1.07999 * 120.00086 * 18.96904 * 20 18 17 22 22 C 1.38813 * 120.00288 * 198.96570 * 20 18 17 23 23 N 1.31619 * 119.99740 * 15.04225 * 22 20 18 24 24 Si 1.86798 * 120.00386 * 195.04213 * 22 20 18 25 25 H 1.48503 * 109.46845 * 59.99965 * 24 22 20 26 26 H 1.48495 * 109.47374 * 180.02562 * 24 22 20 27 27 H 1.48503 * 109.46896 * 300.00240 * 24 22 20 28 28 C 1.53039 * 109.53952 * 298.51463 * 16 15 14 29 29 C 1.46923 * 120.63490 * 4.83810 * 13 11 2 30 30 H 1.08996 * 109.47508 * 304.46082 * 1 2 3 31 31 H 1.09000 * 109.47247 * 64.46689 * 1 2 3 32 32 H 1.09000 * 109.46861 * 184.45943 * 1 2 3 33 33 H 1.08005 * 120.44983 * 359.97394 * 6 5 4 34 34 H 1.07998 * 120.75984 * 180.02562 * 7 6 5 35 35 H 1.08001 * 120.35826 * 179.97438 * 8 7 6 36 36 H 1.08002 * 119.58709 * 179.72912 * 9 8 7 37 37 H 1.09005 * 109.58492 * 246.20189 * 14 13 11 38 38 H 1.09003 * 109.58804 * 6.62359 * 14 13 11 39 39 H 1.09010 * 109.63177 * 294.86361 * 15 14 13 40 40 H 1.08995 * 109.43468 * 174.72821 * 15 14 13 41 41 H 1.08997 * 109.45558 * 58.53250 * 16 15 14 42 42 H 1.08999 * 109.47371 * 55.06460 * 17 16 15 43 43 H 1.08998 * 109.47372 * 175.06573 * 17 16 15 44 44 H 1.08999 * 109.46725 * 95.28644 * 19 18 17 45 45 H 1.08999 * 109.46837 * 215.27889 * 19 18 17 46 46 H 1.08993 * 109.46788 * 335.28234 * 19 18 17 47 47 H 0.97004 * 120.00301 * 180.02562 * 23 22 20 48 48 H 1.09005 * 109.49690 * 301.41028 * 28 16 15 49 49 H 1.08999 * 109.49857 * 181.31490 * 28 16 15 50 50 H 1.09005 * 109.58612 * 353.37314 * 29 13 11 51 51 H 1.08995 * 109.58553 * 113.65484 * 29 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0063 -0.6736 -1.1667 5 6 2.2117 0.0828 -2.2741 6 6 2.6738 -0.5151 -3.4397 7 6 2.8787 0.2675 -4.5624 8 6 2.6122 1.6274 -4.4790 9 6 2.1595 2.1551 -3.2864 10 7 1.9683 1.3821 -2.2341 11 6 2.0323 -0.7103 1.2306 12 8 2.5511 -1.8020 1.1312 13 7 1.9050 -0.1323 2.4414 14 6 2.4779 -0.7655 3.6371 15 6 3.3776 0.2570 4.3479 16 6 2.5709 1.5256 4.6342 17 6 3.4520 2.5330 5.3755 18 7 3.8099 1.9943 6.6901 19 6 5.0237 1.1889 6.8460 20 6 3.0098 2.2437 7.7731 21 1 1.9871 2.5588 7.6278 22 6 3.5133 2.0916 9.0577 23 7 4.8124 2.0010 9.2489 24 14 2.3473 2.0155 10.5151 25 1 1.4258 0.8624 10.3520 26 1 3.1293 1.8517 11.7668 27 1 1.5596 3.2725 10.5850 28 6 2.0950 2.1382 3.3150 29 6 1.1856 1.1399 2.5918 30 1 -0.3634 0.5815 0.8473 31 1 -0.3634 0.4430 -0.9273 32 1 -0.3633 -1.0246 0.0799 33 1 2.8705 -1.5767 -3.4695 34 1 3.2368 -0.1697 -5.4827 35 1 2.7619 2.2665 -5.3367 36 1 1.9549 3.2131 -3.2150 37 1 1.6753 -1.0771 4.3056 38 1 3.0692 -1.6329 3.3435 39 1 4.2275 0.5023 3.7108 40 1 3.7360 -0.1659 5.2863 41 1 1.7076 1.2754 5.2507 42 1 4.3586 2.7162 4.7989 43 1 2.9068 3.4683 5.5023 44 1 5.8427 1.8268 7.1782 45 1 4.8487 0.4076 7.5856 46 1 5.2825 0.7333 5.8903 47 1 5.1643 1.8943 10.1466 48 1 2.9569 2.3658 2.6877 49 1 1.5405 3.0543 3.5184 50 1 0.9239 1.5302 1.6082 51 1 0.2785 0.9800 3.1746 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001692026448.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:36:51 Heat of formation + Delta-G solvation = -4.789573 kcal Electronic energy + Delta-G solvation = -31006.946531 eV Core-core repulsion = 26907.892059 eV Total energy + Delta-G solvation = -4099.054471 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.15288 -40.19970 -38.37064 -37.40127 -35.53614 -33.39868 -32.84195 -32.35144 -30.93747 -30.64413 -29.99817 -27.20305 -25.92010 -25.19347 -24.08369 -23.59704 -23.21855 -22.53590 -20.82920 -20.11870 -19.06895 -18.83835 -17.37942 -16.89704 -16.56628 -16.26376 -16.07028 -15.82566 -15.05661 -14.98616 -14.83766 -14.36202 -14.26782 -13.87177 -13.78298 -13.62515 -13.54372 -13.42578 -13.12598 -12.89190 -12.64721 -12.45420 -12.38491 -12.23570 -11.89273 -11.73278 -11.43435 -11.17529 -11.05437 -10.90830 -10.74414 -10.65305 -10.32528 -10.31575 -10.22059 -9.99490 -9.92492 -9.80461 -9.76800 -9.59465 -8.84775 -8.65212 -8.46411 -6.73158 -5.68766 -3.11566 0.79748 0.90375 2.28365 2.51740 3.22937 3.39708 3.43063 3.45833 3.46351 3.91211 4.22313 4.48880 4.51780 4.61700 4.68850 4.70820 4.79909 4.85142 4.89753 5.04629 5.14467 5.28345 5.31065 5.34892 5.39331 5.43299 5.49239 5.49812 5.59258 5.65813 5.78658 5.82431 5.83132 5.94458 6.04213 6.07417 6.09754 6.19472 6.37393 6.44180 6.52820 6.68288 6.80908 6.86778 6.91375 6.99328 7.33901 7.43030 7.48595 7.75072 7.84126 8.07849 8.41610 9.27239 9.92256 10.39899 11.36063 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.022468 B = 0.002082 C = 0.002052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1245.928239 B =13445.142091 C =13639.760935 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.074 3.926 3 H 0.114 0.886 4 O -0.277 6.277 5 C 0.324 3.676 6 C -0.189 4.189 7 C -0.040 4.040 8 C -0.215 4.215 9 C 0.141 3.859 10 N -0.542 5.542 11 C 0.516 3.484 12 O -0.528 6.528 13 N -0.601 5.601 14 C 0.113 3.887 15 C -0.122 4.122 16 C -0.109 4.109 17 C 0.158 3.842 18 N -0.602 5.602 19 C 0.161 3.839 20 C -0.250 4.250 21 H 0.068 0.932 22 C -0.002 4.002 23 N -0.909 5.909 24 Si 0.902 3.098 25 H -0.285 1.285 26 H -0.291 1.291 27 H -0.284 1.284 28 C -0.129 4.129 29 C 0.100 3.900 30 H 0.084 0.916 31 H 0.073 0.927 32 H 0.069 0.931 33 H 0.143 0.857 34 H 0.141 0.859 35 H 0.137 0.863 36 H 0.160 0.840 37 H 0.069 0.931 38 H 0.087 0.913 39 H 0.056 0.944 40 H 0.090 0.910 41 H 0.072 0.928 42 H 0.033 0.967 43 H 0.046 0.954 44 H 0.025 0.975 45 H 0.042 0.958 46 H 0.002 0.998 47 H 0.252 0.748 48 H 0.063 0.937 49 H 0.075 0.925 50 H 0.083 0.917 51 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.566 -0.767 -27.217 28.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.014 3.986 3 H 0.132 0.868 4 O -0.182 6.182 5 C 0.145 3.855 6 C -0.210 4.210 7 C -0.066 4.066 8 C -0.236 4.236 9 C -0.015 4.015 10 N -0.266 5.266 11 C 0.303 3.697 12 O -0.404 6.404 13 N -0.336 5.336 14 C -0.009 4.009 15 C -0.160 4.160 16 C -0.130 4.130 17 C 0.030 3.970 18 N -0.325 5.325 19 C 0.017 3.983 20 C -0.380 4.380 21 H 0.086 0.914 22 C -0.200 4.200 23 N -0.555 5.555 24 Si 0.733 3.267 25 H -0.212 1.212 26 H -0.217 1.217 27 H -0.211 1.211 28 C -0.168 4.168 29 C -0.023 4.023 30 H 0.102 0.898 31 H 0.092 0.908 32 H 0.088 0.912 33 H 0.161 0.839 34 H 0.159 0.841 35 H 0.155 0.845 36 H 0.177 0.823 37 H 0.087 0.913 38 H 0.105 0.895 39 H 0.075 0.925 40 H 0.108 0.892 41 H 0.090 0.910 42 H 0.052 0.948 43 H 0.064 0.936 44 H 0.044 0.956 45 H 0.061 0.939 46 H 0.020 0.980 47 H 0.062 0.938 48 H 0.081 0.919 49 H 0.093 0.907 50 H 0.101 0.899 51 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -7.430 -1.320 -26.239 27.303 hybrid contribution -0.356 -0.119 0.226 0.439 sum -7.787 -1.438 -26.013 27.191 Atomic orbital electron populations 1.22282 0.92400 1.03817 1.04030 1.22094 0.95842 0.97974 0.82706 0.86848 1.86383 1.79747 1.34462 1.17642 1.19920 0.91057 0.87431 0.87060 1.21108 1.06170 1.02312 0.91395 1.21429 0.94022 0.93468 0.97655 1.21993 1.05362 0.96219 1.00000 1.22447 0.92476 0.99235 0.87296 1.67275 1.21892 1.04709 1.32721 1.20134 0.79504 0.86020 0.84089 1.90711 1.43778 1.20036 1.85833 1.48053 1.55252 1.23450 1.06813 1.21858 0.97506 0.96646 0.84853 1.22065 0.97466 0.95707 1.00729 1.21862 0.99942 0.96638 0.94559 1.20723 0.95641 0.93810 0.86803 1.43902 1.26548 1.58561 1.03473 1.20869 0.88517 0.94242 0.94706 1.19136 0.92782 1.41454 0.84636 0.91440 1.24932 0.95540 1.01968 0.97547 1.70092 1.10157 1.54646 1.20582 0.86365 0.80107 0.77986 0.82271 1.21207 1.21739 1.21068 1.21958 0.99326 0.97871 0.97609 1.22016 0.95330 0.83600 1.01333 0.89764 0.90813 0.91227 0.83950 0.84117 0.84519 0.82253 0.91308 0.89466 0.92544 0.89189 0.90959 0.94848 0.93608 0.95630 0.93878 0.97983 0.93802 0.91855 0.90657 0.89917 0.90834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.58 9.15 37.16 0.34 -1.24 16 2 C 0.07 0.89 2.05 -27.88 -0.06 0.83 16 3 H 0.11 1.29 6.15 -51.93 -0.32 0.97 16 4 O -0.28 -3.72 9.32 -38.37 -0.36 -4.07 16 5 C 0.32 3.70 7.45 -17.12 -0.13 3.57 16 6 C -0.19 -1.73 10.04 -39.28 -0.39 -2.12 16 7 C -0.04 -0.27 10.17 -39.31 -0.40 -0.67 16 8 C -0.22 -1.32 10.11 -39.43 -0.40 -1.72 16 9 C 0.14 1.06 11.18 -17.56 -0.20 0.86 16 10 N -0.54 -5.61 8.65 -13.33 -0.12 -5.73 16 11 C 0.52 7.58 7.06 -10.99 -0.08 7.51 16 12 O -0.53 -9.75 15.97 -14.09 -0.23 -9.98 16 13 N -0.60 -8.03 2.97 -172.50 -0.51 -8.54 16 14 C 0.11 1.65 6.45 -3.49 -0.02 1.63 16 15 C -0.12 -1.94 4.42 -26.39 -0.12 -2.06 16 16 C -0.11 -1.73 2.36 -90.58 -0.21 -1.95 16 17 C 0.16 3.08 5.14 -4.04 -0.02 3.06 16 18 N -0.60 -14.68 2.75 -181.12 -0.50 -15.18 16 19 C 0.16 3.92 7.86 59.85 0.47 4.39 16 20 C -0.25 -6.74 9.69 -15.06 -0.15 -6.88 16 21 H 0.07 1.76 7.87 -52.49 -0.41 1.35 16 22 C 0.00 -0.06 5.07 -17.43 -0.09 -0.15 16 23 N -0.91 -26.56 10.59 55.49 0.59 -25.97 16 24 Si 0.90 21.79 29.58 -169.99 -5.03 16.76 16 25 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 26 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 27 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16 28 C -0.13 -1.58 5.36 -26.61 -0.14 -1.72 16 29 C 0.10 1.07 5.31 -3.71 -0.02 1.05 16 30 H 0.08 0.65 5.79 -51.93 -0.30 0.35 16 31 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.14 1.15 8.06 -52.48 -0.42 0.73 16 34 H 0.14 0.52 8.06 -52.49 -0.42 0.10 16 35 H 0.14 0.47 8.06 -52.49 -0.42 0.05 16 36 H 0.16 0.75 8.06 -52.49 -0.42 0.33 16 37 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 38 H 0.09 1.36 7.03 -51.93 -0.37 1.00 16 39 H 0.06 0.92 8.14 -51.92 -0.42 0.49 16 40 H 0.09 1.64 5.87 -51.93 -0.31 1.33 16 41 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 42 H 0.03 0.63 8.07 -51.93 -0.42 0.21 16 43 H 0.05 0.90 8.04 -51.93 -0.42 0.48 16 44 H 0.03 0.68 7.43 -51.93 -0.39 0.30 16 45 H 0.04 1.13 7.13 -51.93 -0.37 0.76 16 46 H 0.00 0.04 6.20 -51.93 -0.32 -0.29 16 47 H 0.25 7.17 8.31 -40.82 -0.34 6.84 16 48 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 49 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 50 H 0.08 0.72 4.54 -51.93 -0.24 0.48 16 51 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 LS Contribution 399.82 15.07 6.03 6.03 Total: -1.00 -33.53 399.82 -9.80 -43.33 By element: Atomic # 1 Polarization: 7.02 SS G_CDS: -8.06 Total: -1.05 kcal Atomic # 6 Polarization: 6.01 SS G_CDS: -1.61 Total: 4.40 kcal Atomic # 7 Polarization: -54.88 SS G_CDS: -0.54 Total: -55.42 kcal Atomic # 8 Polarization: -13.47 SS G_CDS: -0.58 Total: -14.05 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.03 Total: 16.76 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -33.53 -9.80 -43.33 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001692026448.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.536 kcal (2) G-P(sol) polarization free energy of solvation -33.529 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.796 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.326 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.790 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds