Wall clock time and date at job start Wed Apr 1 2020 04:36:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.46940 * 2 1 4 4 O 1.42897 * 109.47166 * 239.99869 * 2 1 3 5 5 C 1.35675 * 117.00279 * 90.00244 * 4 2 1 6 6 C 1.38914 * 119.68349 * 180.02562 * 5 4 2 7 7 C 1.38380 * 119.11175 * 179.97438 * 6 5 4 8 8 C 1.38824 * 118.48386 * 359.97438 * 7 6 5 9 9 C 1.38048 * 119.29122 * 0.25552 * 8 7 6 10 10 N 1.31968 * 120.83298 * 359.45107 * 9 8 7 11 11 C 1.50703 * 109.46944 * 119.99313 * 2 1 3 12 12 O 1.21280 * 119.99650 * 108.64942 * 11 2 1 13 13 N 1.34774 * 119.99917 * 288.64851 * 11 2 1 14 14 C 1.46928 * 120.62644 * 184.56117 * 13 11 2 15 15 C 1.53622 * 108.54451 * 126.37049 * 14 13 11 16 16 C 1.53040 * 109.24347 * 54.85050 * 15 14 13 17 17 C 1.52995 * 109.44869 * 178.50056 * 16 15 14 18 18 N 1.46503 * 109.47028 * 295.06461 * 17 16 15 19 19 C 1.46505 * 120.00081 * 90.00181 * 18 17 16 20 20 C 1.36938 * 119.99903 * 269.99730 * 18 17 16 21 21 H 1.07999 * 120.00086 * 18.96904 * 20 18 17 22 22 C 1.38813 * 120.00288 * 198.96570 * 20 18 17 23 23 N 1.31619 * 119.99740 * 15.04225 * 22 20 18 24 24 Si 1.86798 * 120.00386 * 195.04213 * 22 20 18 25 25 H 1.48503 * 109.46845 * 59.99965 * 24 22 20 26 26 H 1.48495 * 109.47374 * 180.02562 * 24 22 20 27 27 H 1.48503 * 109.46896 * 300.00240 * 24 22 20 28 28 C 1.53039 * 109.53952 * 298.51463 * 16 15 14 29 29 C 1.46923 * 120.63490 * 4.83810 * 13 11 2 30 30 H 1.08996 * 109.47508 * 304.46082 * 1 2 3 31 31 H 1.09000 * 109.47247 * 64.46689 * 1 2 3 32 32 H 1.09000 * 109.46861 * 184.45943 * 1 2 3 33 33 H 1.08005 * 120.44983 * 359.97394 * 6 5 4 34 34 H 1.07998 * 120.75984 * 180.02562 * 7 6 5 35 35 H 1.08001 * 120.35826 * 179.97438 * 8 7 6 36 36 H 1.08002 * 119.58709 * 179.72912 * 9 8 7 37 37 H 1.09005 * 109.58492 * 246.20189 * 14 13 11 38 38 H 1.09003 * 109.58804 * 6.62359 * 14 13 11 39 39 H 1.09010 * 109.63177 * 294.86361 * 15 14 13 40 40 H 1.08995 * 109.43468 * 174.72821 * 15 14 13 41 41 H 1.08997 * 109.45558 * 58.53250 * 16 15 14 42 42 H 1.08999 * 109.47371 * 55.06460 * 17 16 15 43 43 H 1.08998 * 109.47372 * 175.06573 * 17 16 15 44 44 H 1.08999 * 109.46725 * 95.28644 * 19 18 17 45 45 H 1.08999 * 109.46837 * 215.27889 * 19 18 17 46 46 H 1.08993 * 109.46788 * 335.28234 * 19 18 17 47 47 H 0.97004 * 120.00301 * 180.02562 * 23 22 20 48 48 H 1.09005 * 109.49690 * 301.41028 * 28 16 15 49 49 H 1.08999 * 109.49857 * 181.31490 * 28 16 15 50 50 H 1.09005 * 109.58612 * 353.37314 * 29 13 11 51 51 H 1.08995 * 109.58553 * 113.65484 * 29 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0063 -0.6736 -1.1667 5 6 2.2117 0.0828 -2.2741 6 6 2.6738 -0.5151 -3.4397 7 6 2.8787 0.2675 -4.5624 8 6 2.6122 1.6274 -4.4790 9 6 2.1595 2.1551 -3.2864 10 7 1.9683 1.3821 -2.2341 11 6 2.0323 -0.7103 1.2306 12 8 2.5511 -1.8020 1.1312 13 7 1.9050 -0.1323 2.4414 14 6 2.4779 -0.7655 3.6371 15 6 3.3776 0.2570 4.3479 16 6 2.5709 1.5256 4.6342 17 6 3.4520 2.5330 5.3755 18 7 3.8099 1.9943 6.6901 19 6 5.0237 1.1889 6.8460 20 6 3.0098 2.2437 7.7731 21 1 1.9871 2.5588 7.6278 22 6 3.5133 2.0916 9.0577 23 7 4.8124 2.0010 9.2489 24 14 2.3473 2.0155 10.5151 25 1 1.4258 0.8624 10.3520 26 1 3.1293 1.8517 11.7668 27 1 1.5596 3.2725 10.5850 28 6 2.0950 2.1382 3.3150 29 6 1.1856 1.1399 2.5918 30 1 -0.3634 0.5815 0.8473 31 1 -0.3634 0.4430 -0.9273 32 1 -0.3633 -1.0246 0.0799 33 1 2.8705 -1.5767 -3.4695 34 1 3.2368 -0.1697 -5.4827 35 1 2.7619 2.2665 -5.3367 36 1 1.9549 3.2131 -3.2150 37 1 1.6753 -1.0771 4.3056 38 1 3.0692 -1.6329 3.3435 39 1 4.2275 0.5023 3.7108 40 1 3.7360 -0.1659 5.2863 41 1 1.7076 1.2754 5.2507 42 1 4.3586 2.7162 4.7989 43 1 2.9068 3.4683 5.5023 44 1 5.8427 1.8268 7.1782 45 1 4.8487 0.4076 7.5856 46 1 5.2825 0.7333 5.8903 47 1 5.1643 1.8943 10.1466 48 1 2.9569 2.3658 2.6877 49 1 1.5405 3.0543 3.5184 50 1 0.9239 1.5302 1.6082 51 1 0.2785 0.9800 3.1746 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001692026448.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:36:49 Heat of formation + Delta-G solvation = -25.028609 kcal Electronic energy + Delta-G solvation = -31007.824161 eV Core-core repulsion = 26907.892059 eV Total energy + Delta-G solvation = -4099.932102 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -41.98263 -41.13334 -39.37068 -38.55000 -37.17795 -34.78047 -33.56296 -33.33714 -32.49439 -31.74510 -30.82937 -28.70392 -27.84887 -26.25566 -25.01032 -24.46442 -24.27876 -23.54387 -22.39087 -21.40763 -20.19029 -19.62231 -18.62694 -18.30077 -17.71237 -17.04879 -16.90334 -16.79373 -16.69622 -16.07490 -15.69036 -15.53768 -15.43226 -15.30684 -15.15065 -14.83112 -14.59412 -14.25429 -14.21510 -13.98718 -13.88828 -13.68698 -13.44855 -13.26641 -12.94923 -12.82874 -12.77718 -12.69076 -12.50175 -12.37727 -12.21613 -12.14542 -11.96087 -11.86619 -11.83724 -11.37803 -11.19966 -10.90549 -10.79303 -10.57196 -10.55706 -9.77023 -9.49133 -8.74076 -7.78161 -5.22714 0.21271 0.33348 1.32042 1.46657 1.47553 1.50299 1.56315 2.32167 2.54043 2.83562 3.24454 3.30674 3.34105 3.66853 3.82743 3.87600 3.93973 3.94534 4.05748 4.07894 4.13303 4.16202 4.23723 4.34132 4.37221 4.44330 4.58448 4.62488 4.67224 4.75009 4.77718 4.81379 4.81945 4.93233 4.97220 5.02801 5.08422 5.10375 5.12958 5.18120 5.27432 5.30615 5.39803 5.52361 5.57718 5.63699 5.66403 5.74771 6.15074 6.30356 6.35451 6.85267 6.97726 7.18971 7.93466 8.36492 9.25085 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.022468 B = 0.002082 C = 0.002052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1245.928239 B =13445.142091 C =13639.760935 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.081 3.919 3 H 0.121 0.879 4 O -0.305 6.305 5 C 0.292 3.708 6 C -0.207 4.207 7 C -0.037 4.037 8 C -0.204 4.204 9 C 0.128 3.872 10 N -0.558 5.558 11 C 0.512 3.488 12 O -0.575 6.575 13 N -0.598 5.598 14 C 0.119 3.881 15 C -0.114 4.114 16 C -0.096 4.096 17 C 0.154 3.846 18 N -0.617 5.617 19 C 0.180 3.820 20 C -0.251 4.251 21 H 0.076 0.924 22 C -0.062 4.062 23 N -0.944 5.944 24 Si 0.966 3.034 25 H -0.280 1.280 26 H -0.300 1.300 27 H -0.274 1.274 28 C -0.121 4.121 29 C 0.099 3.901 30 H 0.105 0.895 31 H 0.081 0.919 32 H 0.059 0.941 33 H 0.142 0.858 34 H 0.172 0.828 35 H 0.171 0.829 36 H 0.188 0.812 37 H 0.075 0.925 38 H 0.072 0.928 39 H 0.052 0.948 40 H 0.064 0.936 41 H 0.061 0.939 42 H 0.038 0.962 43 H 0.048 0.952 44 H -0.005 1.005 45 H 0.014 0.986 46 H 0.031 0.969 47 H 0.245 0.755 48 H 0.064 0.936 49 H 0.097 0.903 50 H 0.111 0.889 51 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.612 1.009 -29.891 31.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.021 3.979 3 H 0.139 0.861 4 O -0.213 6.213 5 C 0.114 3.886 6 C -0.227 4.227 7 C -0.062 4.062 8 C -0.224 4.224 9 C -0.027 4.027 10 N -0.282 5.282 11 C 0.300 3.700 12 O -0.455 6.455 13 N -0.331 5.331 14 C -0.003 4.003 15 C -0.152 4.152 16 C -0.117 4.117 17 C 0.029 3.971 18 N -0.341 5.341 19 C 0.034 3.966 20 C -0.381 4.381 21 H 0.094 0.906 22 C -0.256 4.256 23 N -0.592 5.592 24 Si 0.795 3.205 25 H -0.206 1.206 26 H -0.226 1.226 27 H -0.200 1.200 28 C -0.159 4.159 29 C -0.022 4.022 30 H 0.123 0.877 31 H 0.099 0.901 32 H 0.078 0.922 33 H 0.159 0.841 34 H 0.189 0.811 35 H 0.188 0.812 36 H 0.204 0.796 37 H 0.094 0.906 38 H 0.090 0.910 39 H 0.070 0.930 40 H 0.082 0.918 41 H 0.079 0.921 42 H 0.057 0.943 43 H 0.067 0.933 44 H 0.013 0.987 45 H 0.033 0.967 46 H 0.049 0.951 47 H 0.054 0.946 48 H 0.083 0.917 49 H 0.115 0.885 50 H 0.129 0.871 51 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -9.519 0.499 -28.956 30.484 hybrid contribution 0.325 -0.599 0.896 1.126 sum -9.195 -0.100 -28.059 29.528 Atomic orbital electron populations 1.22259 0.90407 1.03716 1.05302 1.22079 0.97153 0.97373 0.81315 0.86108 1.86336 1.80626 1.35806 1.18485 1.20166 0.93196 0.88170 0.87042 1.21340 1.06729 1.02825 0.91822 1.21850 0.92891 0.93703 0.97796 1.22417 1.03153 0.96331 1.00497 1.23048 0.92161 1.00298 0.87216 1.67228 1.22466 1.04385 1.34110 1.20739 0.78620 0.85576 0.85098 1.90682 1.45969 1.22253 1.86559 1.48116 1.54822 1.24125 1.06019 1.21654 0.97371 0.95824 0.85454 1.21916 0.97669 0.96117 0.99475 1.21624 0.98514 0.95488 0.96091 1.20937 0.96534 0.94721 0.84937 1.44145 1.26174 1.58876 1.04859 1.20558 0.87862 0.92946 0.95184 1.19510 0.93342 1.39821 0.85418 0.90641 1.25715 0.96888 1.02800 1.00223 1.70270 1.11843 1.56587 1.20476 0.85348 0.78134 0.78300 0.78737 1.20631 1.22633 1.19966 1.21897 0.99979 0.98799 0.95273 1.22245 0.95096 0.81818 1.03056 0.87670 0.90057 0.92175 0.84056 0.81061 0.81177 0.79553 0.90628 0.90981 0.92954 0.91780 0.92059 0.94341 0.93335 0.98673 0.96680 0.95065 0.94581 0.91724 0.88463 0.87128 0.89100 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.71 9.15 71.98 0.66 -2.05 16 2 C 0.08 1.86 2.05 29.85 0.06 1.92 16 3 H 0.12 2.55 6.15 -2.39 -0.01 2.53 16 4 O -0.31 -8.32 9.32 -71.14 -0.66 -8.98 16 5 C 0.29 6.55 7.45 84.79 0.63 7.18 16 6 C -0.21 -3.64 10.04 22.47 0.23 -3.42 16 7 C -0.04 -0.40 10.17 22.44 0.23 -0.17 16 8 C -0.20 -1.81 10.11 22.36 0.23 -1.58 16 9 C 0.13 1.57 11.18 84.63 0.95 2.52 16 10 N -0.56 -10.66 8.65 -308.95 -2.67 -13.33 16 11 C 0.51 14.90 7.06 87.66 0.62 15.52 16 12 O -0.58 -21.95 15.97 15.76 0.25 -21.69 16 13 N -0.60 -15.21 2.97 -818.06 -2.43 -17.64 16 14 C 0.12 3.47 6.45 86.51 0.56 4.03 16 15 C -0.11 -3.60 4.42 30.82 0.14 -3.47 16 16 C -0.10 -2.92 2.36 -10.77 -0.03 -2.95 16 17 C 0.15 5.87 5.14 86.38 0.44 6.31 16 18 N -0.62 -30.25 2.75 -726.94 -2.00 -32.25 16 19 C 0.18 8.99 7.86 127.77 1.00 10.00 16 20 C -0.25 -13.47 9.69 84.03 0.81 -12.65 16 21 H 0.08 3.86 7.87 -2.91 -0.02 3.84 16 22 C -0.06 -3.49 5.07 84.86 0.43 -3.06 16 23 N -0.94 -56.69 10.59 21.65 0.23 -56.46 16 24 Si 0.97 45.16 29.58 68.60 2.03 47.19 16 25 H -0.28 -12.71 7.11 99.48 0.71 -12.01 16 26 H -0.30 -14.30 7.11 99.48 0.71 -13.60 16 27 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 28 C -0.12 -2.60 5.36 30.67 0.16 -2.43 16 29 C 0.10 1.82 5.31 86.36 0.46 2.28 16 30 H 0.10 1.28 5.79 -2.39 -0.01 1.27 16 31 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 32 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 33 H 0.14 2.34 8.06 -2.91 -0.02 2.32 16 34 H 0.17 0.68 8.06 -2.91 -0.02 0.65 16 35 H 0.17 0.34 8.06 -2.91 -0.02 0.32 16 36 H 0.19 1.09 8.06 -2.91 -0.02 1.06 16 37 H 0.08 2.10 8.14 -2.38 -0.02 2.08 16 38 H 0.07 2.33 7.03 -2.39 -0.02 2.32 16 39 H 0.05 1.69 8.14 -2.38 -0.02 1.67 16 40 H 0.06 2.37 5.87 -2.39 -0.01 2.36 16 41 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 42 H 0.04 1.42 8.07 -2.39 -0.02 1.40 16 43 H 0.05 1.81 8.04 -2.39 -0.02 1.79 16 44 H -0.01 -0.28 7.43 -2.39 -0.02 -0.30 16 45 H 0.01 0.80 7.13 -2.39 -0.02 0.78 16 46 H 0.03 1.34 6.20 -2.39 -0.01 1.33 16 47 H 0.25 14.42 8.31 -92.70 -0.77 13.65 16 48 H 0.06 1.42 8.14 -2.38 -0.02 1.40 16 49 H 0.10 1.74 8.14 -2.39 -0.02 1.72 16 50 H 0.11 1.48 4.54 -2.38 -0.01 1.47 16 51 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 Total: -1.00 -76.09 399.82 3.25 -72.84 By element: Atomic # 1 Polarization: 11.44 SS G_CDS: 0.92 Total: 12.36 kcal Atomic # 6 Polarization: 10.38 SS G_CDS: 7.58 Total: 17.96 kcal Atomic # 7 Polarization: -112.81 SS G_CDS: -6.87 Total: -119.68 kcal Atomic # 8 Polarization: -30.26 SS G_CDS: -0.41 Total: -30.67 kcal Atomic # 14 Polarization: 45.16 SS G_CDS: 2.03 Total: 47.19 kcal Total: -76.09 3.25 -72.84 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001692026448.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.814 kcal (2) G-P(sol) polarization free energy of solvation -76.092 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.249 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.843 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds