Wall clock time and date at job start Wed Apr 1 2020 04:40:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.47024 * 2 1 4 4 O 1.42905 * 109.47477 * 119.99457 * 2 1 3 5 5 C 1.35674 * 117.00026 * 270.00536 * 4 2 1 6 6 C 1.38924 * 119.68336 * 179.97438 * 5 4 2 7 7 C 1.38368 * 119.11337 * 179.97438 * 6 5 4 8 8 C 1.38834 * 118.48586 * 359.97438 * 7 6 5 9 9 C 1.38047 * 119.28758 * 359.97438 * 8 7 6 10 10 N 1.31965 * 120.83683 * 359.74707 * 9 8 7 11 11 C 1.50701 * 109.47378 * 239.99813 * 2 1 3 12 12 O 1.21278 * 119.99691 * 244.99716 * 11 2 1 13 13 N 1.34776 * 119.99690 * 64.99960 * 11 2 1 14 14 C 1.46916 * 120.63127 * 5.13206 * 13 11 2 15 15 C 1.53202 * 108.76592 * 126.40902 * 14 13 11 16 16 C 1.53039 * 109.31162 * 54.65237 * 15 14 13 17 17 C 1.53047 * 109.52922 * 298.62129 * 16 15 14 18 18 C 1.46925 * 120.62514 * 185.15926 * 13 11 2 19 19 H 1.09002 * 109.70462 * 113.73329 * 18 13 11 20 20 C 1.52997 * 109.58905 * 353.37038 * 18 13 11 21 21 N 1.46505 * 109.47049 * 178.65701 * 20 18 13 22 22 C 1.46497 * 120.00204 * 276.11156 * 21 20 18 23 23 C 1.36936 * 119.99820 * 96.11243 * 21 20 18 24 24 H 1.08000 * 119.99827 * 7.53335 * 23 21 20 25 25 C 1.38817 * 120.00119 * 187.52900 * 23 21 20 26 26 N 1.31614 * 119.99743 * 7.72120 * 25 23 21 27 27 Si 1.86793 * 120.00010 * 187.72035 * 25 23 21 28 28 H 1.48500 * 109.47519 * 59.99747 * 27 25 23 29 29 H 1.48498 * 109.46968 * 180.02562 * 27 25 23 30 30 H 1.48503 * 109.47288 * 299.99982 * 27 25 23 31 31 H 1.08999 * 109.46720 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.47432 * 300.00023 * 1 2 3 33 33 H 1.08996 * 109.47420 * 60.00326 * 1 2 3 34 34 H 1.08004 * 120.44213 * 359.97438 * 6 5 4 35 35 H 1.08004 * 120.76222 * 179.97438 * 7 6 5 36 36 H 1.07997 * 120.35546 * 180.02562 * 8 7 6 37 37 H 1.08000 * 119.58054 * 179.97438 * 9 8 7 38 38 H 1.08997 * 109.59302 * 246.19965 * 14 13 11 39 39 H 1.08999 * 109.59487 * 6.48583 * 14 13 11 40 40 H 1.09001 * 109.50268 * 294.70096 * 15 14 13 41 41 H 1.08993 * 109.49173 * 174.60180 * 15 14 13 42 42 H 1.08997 * 109.46169 * 178.60284 * 16 15 14 43 43 H 1.09002 * 109.46124 * 58.62938 * 16 15 14 44 44 H 1.09002 * 109.49762 * 181.32410 * 17 16 15 45 45 H 1.08999 * 109.49172 * 301.38542 * 17 16 15 46 46 H 1.08996 * 109.47455 * 298.65695 * 20 18 13 47 47 H 1.09003 * 109.46987 * 58.65966 * 20 18 13 48 48 H 1.09001 * 109.47301 * 354.39084 * 22 21 20 49 49 H 1.09006 * 109.47078 * 114.38136 * 22 21 20 50 50 H 1.08990 * 109.47435 * 234.38340 * 22 21 20 51 51 H 0.97001 * 120.00235 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0064 -0.6735 1.1669 5 6 2.2117 0.0831 2.2742 6 6 2.6738 -0.5147 3.4399 7 6 2.8795 0.2682 4.5621 8 6 2.6149 1.6285 4.4781 9 6 2.1585 2.1553 3.2865 10 7 1.9771 1.3839 2.2313 11 6 2.0324 -0.7104 -1.2304 12 8 2.6531 -1.7466 -1.1213 13 7 1.7919 -0.1942 -2.4520 14 6 1.1407 1.1148 -2.5965 15 6 2.0141 2.0042 -3.4870 16 6 2.2825 1.2862 -4.8116 17 6 3.0373 -0.0178 -4.5430 18 6 2.1757 -0.9302 -3.6643 19 1 1.2815 -1.2271 -4.2125 20 6 2.9767 -2.1747 -3.2769 21 7 3.3305 -2.9235 -4.4854 22 6 2.3729 -3.8655 -5.0701 23 6 4.5563 -2.7429 -5.0685 24 1 5.3065 -2.1439 -4.5739 25 6 4.8346 -3.3299 -6.2953 26 7 3.8774 -3.9311 -6.9694 27 14 6.5677 -3.2664 -6.9893 28 1 7.5020 -3.9377 -6.0502 29 1 6.6010 -3.9601 -8.3018 30 1 6.9779 -1.8504 -7.1678 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3634 0.5138 0.8900 33 1 -0.3634 0.5138 -0.8900 34 1 2.8699 -1.5764 3.4699 35 1 3.2378 -0.1689 5.4825 36 1 2.7653 2.2677 5.3354 37 1 1.9508 3.2128 3.2160 38 1 0.1609 0.9867 -3.0566 39 1 1.0261 1.5763 -1.6157 40 1 2.9601 2.2055 -2.9842 41 1 1.4974 2.9441 -3.6808 42 1 2.8831 1.9272 -5.4569 43 1 1.3350 1.0629 -5.3020 44 1 3.2488 -0.5171 -5.4885 45 1 3.9737 0.2029 -4.0307 46 1 3.8861 -1.8742 -2.7566 47 1 2.3749 -2.8050 -2.6222 48 1 1.5021 -3.9490 -4.4199 49 1 2.0610 -3.5050 -6.0504 50 1 2.8430 -4.8432 -5.1752 51 1 4.0717 -4.3410 -7.8268 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001692260905.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:40:34 Heat of formation + Delta-G solvation = 18.554817 kcal Electronic energy + Delta-G solvation = -32004.123371 eV Core-core repulsion = 27906.081188 eV Total energy + Delta-G solvation = -4098.042183 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -41.04332 -40.20129 -38.21296 -36.86150 -35.49352 -33.28867 -32.72993 -32.20517 -31.34408 -30.22598 -29.78503 -26.58049 -25.81499 -24.98463 -24.25625 -23.75104 -23.11232 -22.19165 -20.54524 -20.37235 -18.91394 -18.65679 -17.12623 -16.71339 -16.40142 -16.09211 -15.85743 -15.64434 -15.02154 -14.74652 -14.67113 -14.35226 -14.14445 -13.91068 -13.61597 -13.43970 -13.30181 -13.12324 -13.01486 -12.67083 -12.55553 -12.36883 -12.24988 -12.14523 -11.85634 -11.40586 -11.36134 -11.10989 -10.87377 -10.68586 -10.63346 -10.51281 -10.35043 -10.21545 -10.15166 -10.01981 -9.87080 -9.77090 -9.65145 -8.88966 -8.66809 -8.38071 -8.16190 -6.73156 -5.50381 -2.94045 0.89735 1.00393 2.50303 2.80216 3.41489 3.46406 3.51428 3.52889 3.53906 4.01023 4.45177 4.57671 4.61963 4.72957 4.79307 4.83386 4.87873 4.94999 4.98514 5.04378 5.15765 5.40839 5.44005 5.46155 5.52517 5.55171 5.58941 5.59555 5.68817 5.79058 5.91902 5.92489 5.97376 6.00504 6.08716 6.15042 6.20957 6.24809 6.52612 6.57542 6.79472 6.91195 6.99439 7.05475 7.13776 7.37097 7.57936 7.67216 7.71283 7.87129 8.04477 8.41699 8.54723 9.40887 10.06012 10.49891 11.47647 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.014784 B = 0.002798 C = 0.002620 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1893.427638 B =10004.958768 C =10685.556239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.072 3.928 3 H 0.110 0.890 4 O -0.273 6.273 5 C 0.327 3.673 6 C -0.189 4.189 7 C -0.041 4.041 8 C -0.218 4.218 9 C 0.139 3.861 10 N -0.544 5.544 11 C 0.510 3.490 12 O -0.504 6.504 13 N -0.599 5.599 14 C 0.101 3.899 15 C -0.133 4.133 16 C -0.121 4.121 17 C -0.118 4.118 18 C 0.124 3.876 19 H 0.065 0.935 20 C 0.166 3.834 21 N -0.610 5.610 22 C 0.166 3.834 23 C -0.234 4.234 24 H 0.070 0.930 25 C -0.009 4.009 26 N -0.919 5.919 27 Si 0.904 3.096 28 H -0.287 1.287 29 H -0.292 1.292 30 H -0.286 1.286 31 H 0.069 0.931 32 H 0.070 0.930 33 H 0.081 0.919 34 H 0.144 0.856 35 H 0.140 0.860 36 H 0.136 0.864 37 H 0.158 0.842 38 H 0.069 0.931 39 H 0.080 0.920 40 H 0.064 0.936 41 H 0.069 0.931 42 H 0.060 0.940 43 H 0.059 0.941 44 H 0.097 0.903 45 H 0.056 0.944 46 H 0.057 0.943 47 H 0.060 0.940 48 H -0.010 1.010 49 H 0.051 0.949 50 H 0.030 0.970 51 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.806 15.696 19.464 26.510 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.011 3.989 3 H 0.128 0.872 4 O -0.179 6.179 5 C 0.148 3.852 6 C -0.209 4.209 7 C -0.066 4.066 8 C -0.238 4.238 9 C -0.016 4.016 10 N -0.268 5.268 11 C 0.296 3.704 12 O -0.378 6.378 13 N -0.335 5.335 14 C -0.022 4.022 15 C -0.171 4.171 16 C -0.159 4.159 17 C -0.156 4.156 18 C 0.020 3.980 19 H 0.083 0.917 20 C 0.038 3.962 21 N -0.333 5.333 22 C 0.022 3.978 23 C -0.363 4.363 24 H 0.088 0.912 25 C -0.205 4.205 26 N -0.568 5.568 27 Si 0.735 3.265 28 H -0.213 1.213 29 H -0.218 1.218 30 H -0.213 1.213 31 H 0.089 0.911 32 H 0.089 0.911 33 H 0.100 0.900 34 H 0.161 0.839 35 H 0.158 0.842 36 H 0.153 0.847 37 H 0.176 0.824 38 H 0.087 0.913 39 H 0.098 0.902 40 H 0.083 0.917 41 H 0.088 0.912 42 H 0.078 0.922 43 H 0.078 0.922 44 H 0.116 0.884 45 H 0.075 0.925 46 H 0.075 0.925 47 H 0.078 0.922 48 H 0.009 0.991 49 H 0.069 0.931 50 H 0.048 0.952 51 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -8.702 15.055 18.506 25.394 hybrid contribution 1.125 0.083 0.164 1.140 sum -7.577 15.138 18.670 25.202 Atomic orbital electron populations 1.22253 0.92682 1.03852 1.03645 1.22173 0.95611 0.97919 0.83151 0.87243 1.86411 1.79551 1.34315 1.17596 1.19949 0.90771 0.87320 0.87173 1.21132 1.05947 1.02428 0.91426 1.21423 0.94074 0.93440 0.97664 1.21964 1.05627 0.96221 1.00004 1.22407 0.92724 0.99160 0.87339 1.67270 1.22151 1.04772 1.32583 1.20083 0.80667 0.85776 0.83885 1.90830 1.38648 1.22980 1.85337 1.48308 1.59870 1.19648 1.05703 1.21881 0.96194 0.83705 1.00442 1.21915 1.00201 0.97962 0.97051 1.21573 1.00732 0.97554 0.96010 1.21864 0.97602 0.94148 1.02022 1.22608 0.98170 0.93858 0.83366 0.91747 1.21462 0.97557 0.89787 0.87374 1.44360 1.15066 1.45135 1.28764 1.21004 0.88469 0.93233 0.95124 1.19268 0.89774 1.27083 1.00196 0.91212 1.24834 0.97458 1.01156 0.97004 1.70153 1.29778 1.42302 1.14544 0.86329 0.84694 0.77448 0.78075 1.21350 1.21779 1.21277 0.91149 0.91135 0.90001 0.83857 0.84175 0.84656 0.82441 0.91298 0.90160 0.91700 0.91248 0.92153 0.92200 0.88412 0.92516 0.92507 0.92161 0.99134 0.93071 0.95166 0.94101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.78 9.17 37.16 0.34 -1.44 16 2 C 0.07 0.96 2.06 -27.88 -0.06 0.91 16 3 H 0.11 1.37 6.04 -51.93 -0.31 1.05 16 4 O -0.27 -4.10 9.30 -38.59 -0.36 -4.46 16 5 C 0.33 4.14 7.46 -17.12 -0.13 4.01 16 6 C -0.19 -1.97 10.04 -39.28 -0.39 -2.37 16 7 C -0.04 -0.31 10.17 -39.31 -0.40 -0.71 16 8 C -0.22 -1.52 10.11 -39.43 -0.40 -1.92 16 9 C 0.14 1.15 11.18 -17.56 -0.20 0.95 16 10 N -0.54 -6.12 8.64 -13.33 -0.12 -6.23 16 11 C 0.51 8.62 7.01 -10.98 -0.08 8.54 16 12 O -0.50 -10.67 11.91 -14.30 -0.17 -10.84 16 13 N -0.60 -9.33 2.97 -165.22 -0.49 -9.83 16 14 C 0.10 1.14 4.91 -3.71 -0.02 1.12 16 15 C -0.13 -1.51 6.08 -26.61 -0.16 -1.67 16 16 C -0.12 -1.69 5.88 -26.69 -0.16 -1.85 16 17 C -0.12 -2.18 4.74 -26.61 -0.13 -2.30 16 18 C 0.12 2.36 3.18 -67.60 -0.22 2.14 16 19 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 20 C 0.17 3.82 3.53 -4.04 -0.01 3.81 16 21 N -0.61 -16.08 2.66 -181.12 -0.48 -16.56 16 22 C 0.17 4.36 9.00 59.85 0.54 4.90 16 23 C -0.23 -6.57 8.35 -15.06 -0.13 -6.70 16 24 H 0.07 1.95 7.77 -52.49 -0.41 1.54 16 25 C -0.01 -0.25 5.38 -17.43 -0.09 -0.35 16 26 N -0.92 -27.18 9.65 55.49 0.54 -26.65 16 27 Si 0.90 22.61 29.56 -169.99 -5.02 17.59 16 28 H -0.29 -7.20 7.11 56.52 0.40 -6.79 16 29 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 30 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 31 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 32 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.08 0.74 5.79 -51.93 -0.30 0.43 16 34 H 0.14 1.38 8.06 -52.48 -0.42 0.96 16 35 H 0.14 0.67 8.06 -52.48 -0.42 0.25 16 36 H 0.14 0.57 8.06 -52.49 -0.42 0.14 16 37 H 0.16 0.82 8.06 -52.49 -0.42 0.40 16 38 H 0.07 0.70 8.13 -51.93 -0.42 0.27 16 39 H 0.08 0.74 4.98 -51.93 -0.26 0.49 16 40 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 41 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 42 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 43 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 44 H 0.10 2.16 7.03 -51.93 -0.37 1.80 16 45 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 46 H 0.06 1.41 6.94 -51.93 -0.36 1.05 16 47 H 0.06 1.46 6.20 -51.93 -0.32 1.14 16 48 H -0.01 -0.24 7.85 -51.93 -0.41 -0.65 16 49 H 0.05 1.42 6.74 -51.93 -0.35 1.07 16 50 H 0.03 0.85 7.42 -51.93 -0.39 0.47 16 51 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 LS Contribution 394.82 15.07 5.95 5.95 Total: -1.00 -33.59 394.82 -9.94 -43.53 By element: Atomic # 1 Polarization: 8.53 SS G_CDS: -8.10 Total: 0.42 kcal Atomic # 6 Polarization: 8.76 SS G_CDS: -1.68 Total: 7.07 kcal Atomic # 7 Polarization: -58.72 SS G_CDS: -0.55 Total: -59.27 kcal Atomic # 8 Polarization: -14.77 SS G_CDS: -0.53 Total: -15.30 kcal Atomic # 14 Polarization: 22.61 SS G_CDS: -5.02 Total: 17.59 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -33.59 -9.94 -43.53 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001692260905.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.088 kcal (2) G-P(sol) polarization free energy of solvation -33.591 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.942 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.533 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.555 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds