Wall clock time and date at job start Wed Apr 1 2020 04:40:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.47024 * 2 1 4 4 O 1.42905 * 109.47477 * 119.99457 * 2 1 3 5 5 C 1.35674 * 117.00026 * 270.00536 * 4 2 1 6 6 C 1.38924 * 119.68336 * 179.97438 * 5 4 2 7 7 C 1.38368 * 119.11337 * 179.97438 * 6 5 4 8 8 C 1.38834 * 118.48586 * 359.97438 * 7 6 5 9 9 C 1.38047 * 119.28758 * 359.97438 * 8 7 6 10 10 N 1.31965 * 120.83683 * 359.74707 * 9 8 7 11 11 C 1.50701 * 109.47378 * 239.99813 * 2 1 3 12 12 O 1.21278 * 119.99691 * 244.99716 * 11 2 1 13 13 N 1.34776 * 119.99690 * 64.99960 * 11 2 1 14 14 C 1.46916 * 120.63127 * 5.13206 * 13 11 2 15 15 C 1.53202 * 108.76592 * 126.40902 * 14 13 11 16 16 C 1.53039 * 109.31162 * 54.65237 * 15 14 13 17 17 C 1.53047 * 109.52922 * 298.62129 * 16 15 14 18 18 C 1.46925 * 120.62514 * 185.15926 * 13 11 2 19 19 H 1.09002 * 109.70462 * 113.73329 * 18 13 11 20 20 C 1.52997 * 109.58905 * 353.37038 * 18 13 11 21 21 N 1.46505 * 109.47049 * 178.65701 * 20 18 13 22 22 C 1.46497 * 120.00204 * 276.11156 * 21 20 18 23 23 C 1.36936 * 119.99820 * 96.11243 * 21 20 18 24 24 H 1.08000 * 119.99827 * 7.53335 * 23 21 20 25 25 C 1.38817 * 120.00119 * 187.52900 * 23 21 20 26 26 N 1.31614 * 119.99743 * 7.72120 * 25 23 21 27 27 Si 1.86793 * 120.00010 * 187.72035 * 25 23 21 28 28 H 1.48500 * 109.47519 * 59.99747 * 27 25 23 29 29 H 1.48498 * 109.46968 * 180.02562 * 27 25 23 30 30 H 1.48503 * 109.47288 * 299.99982 * 27 25 23 31 31 H 1.08999 * 109.46720 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.47432 * 300.00023 * 1 2 3 33 33 H 1.08996 * 109.47420 * 60.00326 * 1 2 3 34 34 H 1.08004 * 120.44213 * 359.97438 * 6 5 4 35 35 H 1.08004 * 120.76222 * 179.97438 * 7 6 5 36 36 H 1.07997 * 120.35546 * 180.02562 * 8 7 6 37 37 H 1.08000 * 119.58054 * 179.97438 * 9 8 7 38 38 H 1.08997 * 109.59302 * 246.19965 * 14 13 11 39 39 H 1.08999 * 109.59487 * 6.48583 * 14 13 11 40 40 H 1.09001 * 109.50268 * 294.70096 * 15 14 13 41 41 H 1.08993 * 109.49173 * 174.60180 * 15 14 13 42 42 H 1.08997 * 109.46169 * 178.60284 * 16 15 14 43 43 H 1.09002 * 109.46124 * 58.62938 * 16 15 14 44 44 H 1.09002 * 109.49762 * 181.32410 * 17 16 15 45 45 H 1.08999 * 109.49172 * 301.38542 * 17 16 15 46 46 H 1.08996 * 109.47455 * 298.65695 * 20 18 13 47 47 H 1.09003 * 109.46987 * 58.65966 * 20 18 13 48 48 H 1.09001 * 109.47301 * 354.39084 * 22 21 20 49 49 H 1.09006 * 109.47078 * 114.38136 * 22 21 20 50 50 H 1.08990 * 109.47435 * 234.38340 * 22 21 20 51 51 H 0.97001 * 120.00235 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0064 -0.6735 1.1669 5 6 2.2117 0.0831 2.2742 6 6 2.6738 -0.5147 3.4399 7 6 2.8795 0.2682 4.5621 8 6 2.6149 1.6285 4.4781 9 6 2.1585 2.1553 3.2865 10 7 1.9771 1.3839 2.2313 11 6 2.0324 -0.7104 -1.2304 12 8 2.6531 -1.7466 -1.1213 13 7 1.7919 -0.1942 -2.4520 14 6 1.1407 1.1148 -2.5965 15 6 2.0141 2.0042 -3.4870 16 6 2.2825 1.2862 -4.8116 17 6 3.0373 -0.0178 -4.5430 18 6 2.1757 -0.9302 -3.6643 19 1 1.2815 -1.2271 -4.2125 20 6 2.9767 -2.1747 -3.2769 21 7 3.3305 -2.9235 -4.4854 22 6 2.3729 -3.8655 -5.0701 23 6 4.5563 -2.7429 -5.0685 24 1 5.3065 -2.1439 -4.5739 25 6 4.8346 -3.3299 -6.2953 26 7 3.8774 -3.9311 -6.9694 27 14 6.5677 -3.2664 -6.9893 28 1 7.5020 -3.9377 -6.0502 29 1 6.6010 -3.9601 -8.3018 30 1 6.9779 -1.8504 -7.1678 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3634 0.5138 0.8900 33 1 -0.3634 0.5138 -0.8900 34 1 2.8699 -1.5764 3.4699 35 1 3.2378 -0.1689 5.4825 36 1 2.7653 2.2677 5.3354 37 1 1.9508 3.2128 3.2160 38 1 0.1609 0.9867 -3.0566 39 1 1.0261 1.5763 -1.6157 40 1 2.9601 2.2055 -2.9842 41 1 1.4974 2.9441 -3.6808 42 1 2.8831 1.9272 -5.4569 43 1 1.3350 1.0629 -5.3020 44 1 3.2488 -0.5171 -5.4885 45 1 3.9737 0.2029 -4.0307 46 1 3.8861 -1.8742 -2.7566 47 1 2.3749 -2.8050 -2.6222 48 1 1.5021 -3.9490 -4.4199 49 1 2.0610 -3.5050 -6.0504 50 1 2.8430 -4.8432 -5.1752 51 1 4.0717 -4.3410 -7.8268 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001692260905.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:40:33 Heat of formation + Delta-G solvation = -2.538527 kcal Electronic energy + Delta-G solvation = -32005.038047 eV Core-core repulsion = 27906.081188 eV Total energy + Delta-G solvation = -4098.956859 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -42.06931 -41.27083 -39.21655 -38.16659 -37.40424 -34.58872 -33.76483 -33.41752 -32.65442 -31.59688 -30.81497 -28.14635 -27.97634 -26.26669 -25.31561 -24.54119 -24.22520 -23.52862 -22.19053 -21.67942 -20.19113 -19.54941 -18.79607 -18.09574 -17.50973 -17.12684 -16.90991 -16.74421 -16.52907 -16.23304 -15.66209 -15.49410 -15.42663 -15.25964 -14.98875 -14.65837 -14.54824 -14.31806 -14.13494 -13.99353 -13.96861 -13.79198 -13.43273 -13.09038 -12.98609 -12.82587 -12.77713 -12.72600 -12.59968 -12.28081 -12.14261 -12.12388 -12.00021 -11.85330 -11.69640 -11.54379 -11.36923 -10.88933 -10.70114 -10.58176 -10.21641 -9.55081 -9.47059 -8.88421 -7.71245 -5.17811 0.22231 0.33851 1.42966 1.44167 1.47443 1.49613 1.52995 2.33205 2.53102 2.84406 3.28278 3.30241 3.39934 3.75017 3.84934 3.87284 3.95375 3.97872 4.02993 4.06726 4.13575 4.15015 4.24720 4.35462 4.38516 4.44442 4.59802 4.63977 4.65475 4.72741 4.78345 4.80890 4.82507 4.99097 5.03825 5.06870 5.09922 5.11803 5.16886 5.29293 5.31021 5.35261 5.47054 5.51145 5.54845 5.59479 5.71477 5.82063 6.19699 6.30977 6.42688 6.86799 7.11658 7.19625 7.91566 8.31715 9.25435 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.014784 B = 0.002798 C = 0.002620 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1893.427638 B =10004.958768 C =10685.556239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.083 3.917 3 H 0.123 0.877 4 O -0.306 6.306 5 C 0.293 3.707 6 C -0.210 4.210 7 C -0.037 4.037 8 C -0.205 4.205 9 C 0.129 3.871 10 N -0.557 5.557 11 C 0.502 3.498 12 O -0.560 6.560 13 N -0.596 5.596 14 C 0.094 3.906 15 C -0.126 4.126 16 C -0.115 4.115 17 C -0.109 4.109 18 C 0.137 3.863 19 H 0.062 0.938 20 C 0.178 3.822 21 N -0.624 5.624 22 C 0.185 3.815 23 C -0.241 4.241 24 H 0.064 0.936 25 C -0.059 4.059 26 N -0.944 5.944 27 Si 0.967 3.033 28 H -0.286 1.286 29 H -0.291 1.291 30 H -0.275 1.275 31 H 0.055 0.945 32 H 0.083 0.917 33 H 0.104 0.896 34 H 0.137 0.863 35 H 0.171 0.829 36 H 0.172 0.828 37 H 0.191 0.809 38 H 0.093 0.907 39 H 0.109 0.891 40 H 0.057 0.943 41 H 0.110 0.890 42 H 0.068 0.932 43 H 0.069 0.931 44 H 0.055 0.945 45 H 0.037 0.963 46 H 0.030 0.970 47 H 0.046 0.954 48 H 0.013 0.987 49 H 0.034 0.966 50 H 0.001 0.999 51 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.823 19.513 21.417 30.593 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.024 3.976 3 H 0.140 0.860 4 O -0.213 6.213 5 C 0.116 3.884 6 C -0.230 4.230 7 C -0.063 4.063 8 C -0.224 4.224 9 C -0.026 4.026 10 N -0.281 5.281 11 C 0.289 3.711 12 O -0.438 6.438 13 N -0.330 5.330 14 C -0.027 4.027 15 C -0.164 4.164 16 C -0.153 4.153 17 C -0.148 4.148 18 C 0.032 3.968 19 H 0.080 0.920 20 C 0.052 3.948 21 N -0.349 5.349 22 C 0.040 3.960 23 C -0.371 4.371 24 H 0.082 0.918 25 C -0.252 4.252 26 N -0.593 5.593 27 Si 0.795 3.205 28 H -0.213 1.213 29 H -0.217 1.217 30 H -0.201 1.201 31 H 0.074 0.926 32 H 0.102 0.898 33 H 0.123 0.877 34 H 0.155 0.845 35 H 0.188 0.812 36 H 0.190 0.810 37 H 0.208 0.792 38 H 0.111 0.889 39 H 0.127 0.873 40 H 0.075 0.925 41 H 0.129 0.871 42 H 0.087 0.913 43 H 0.087 0.913 44 H 0.074 0.926 45 H 0.056 0.944 46 H 0.049 0.951 47 H 0.064 0.936 48 H 0.031 0.969 49 H 0.052 0.948 50 H 0.020 0.980 51 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -9.749 18.943 20.496 29.563 hybrid contribution 1.457 -1.039 -0.250 1.807 sum -8.292 17.904 20.245 28.270 Atomic orbital electron populations 1.22228 0.90400 1.03507 1.05330 1.22090 0.97019 0.97277 0.81256 0.86000 1.86359 1.80546 1.35874 1.18558 1.20173 0.93076 0.88192 0.86995 1.21337 1.06852 1.02775 0.92080 1.21840 0.92941 0.93817 0.97661 1.22417 1.03212 0.96163 1.00641 1.23079 0.92090 1.00362 0.87093 1.67228 1.22633 1.04199 1.34050 1.20879 0.79678 0.85310 0.85199 1.90796 1.41163 1.25588 1.86224 1.48275 1.59566 1.21011 1.04151 1.22296 0.96758 0.81182 1.02492 1.21908 1.00425 0.99142 0.94929 1.21533 1.00457 0.95133 0.98153 1.21674 0.97467 0.96294 0.99340 1.21979 0.97331 0.92692 0.84780 0.91969 1.21266 0.96719 0.91227 0.85575 1.44536 1.14962 1.46105 1.29306 1.20683 0.88817 0.91645 0.94836 1.19415 0.90472 1.26828 1.00359 0.91805 1.25559 1.01102 1.01218 0.97362 1.70331 1.31337 1.43052 1.14594 0.85335 0.80268 0.77784 0.77063 1.21283 1.21673 1.20106 0.92555 0.89830 0.87734 0.84461 0.81171 0.81037 0.79248 0.88879 0.87304 0.92451 0.87123 0.91284 0.91275 0.92613 0.94394 0.95120 0.93557 0.96882 0.94772 0.98024 0.94544 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.10 9.17 71.98 0.66 -2.44 16 2 C 0.08 2.20 2.06 29.85 0.06 2.26 16 3 H 0.12 2.85 6.04 -2.39 -0.01 2.84 16 4 O -0.31 -9.50 9.30 -70.93 -0.66 -10.16 16 5 C 0.29 7.41 7.46 84.79 0.63 8.05 16 6 C -0.21 -4.36 10.04 22.47 0.23 -4.14 16 7 C -0.04 -0.49 10.17 22.44 0.23 -0.26 16 8 C -0.20 -2.10 10.11 22.37 0.23 -1.88 16 9 C 0.13 1.72 11.18 84.63 0.95 2.66 16 10 N -0.56 -11.57 8.64 -308.95 -2.67 -14.24 16 11 C 0.50 17.32 7.01 87.66 0.61 17.94 16 12 O -0.56 -25.27 11.91 15.97 0.19 -25.08 16 13 N -0.60 -18.29 2.97 -795.04 -2.36 -20.65 16 14 C 0.09 1.81 4.91 86.37 0.42 2.24 16 15 C -0.13 -2.42 6.08 30.67 0.19 -2.23 16 16 C -0.12 -3.02 5.88 30.62 0.18 -2.84 16 17 C -0.11 -4.13 4.74 30.67 0.15 -3.99 16 18 C 0.14 5.35 3.18 44.97 0.14 5.50 16 19 H 0.06 2.47 8.14 -2.39 -0.02 2.45 16 20 C 0.18 8.72 3.53 86.38 0.30 9.02 16 21 N -0.62 -34.68 2.66 -726.94 -1.93 -36.61 16 22 C 0.18 10.17 9.00 127.77 1.15 11.32 16 23 C -0.24 -14.17 8.35 84.03 0.70 -13.47 16 24 H 0.06 3.75 7.77 -2.91 -0.02 3.72 16 25 C -0.06 -3.49 5.38 84.86 0.46 -3.04 16 26 N -0.94 -57.70 9.65 21.65 0.21 -57.50 16 27 Si 0.97 47.67 29.56 68.60 2.03 49.69 16 28 H -0.29 -14.00 7.11 99.48 0.71 -13.30 16 29 H -0.29 -14.21 7.11 99.48 0.71 -13.51 16 30 H -0.28 -12.98 7.11 99.48 0.71 -12.28 16 31 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 32 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 33 H 0.10 1.53 5.79 -2.39 -0.01 1.51 16 34 H 0.14 2.83 8.06 -2.91 -0.02 2.81 16 35 H 0.17 1.08 8.06 -2.91 -0.02 1.06 16 36 H 0.17 0.52 8.06 -2.91 -0.02 0.50 16 37 H 0.19 1.15 8.06 -2.91 -0.02 1.13 16 38 H 0.09 1.45 8.13 -2.39 -0.02 1.43 16 39 H 0.11 1.56 4.98 -2.39 -0.01 1.54 16 40 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 41 H 0.11 1.35 8.14 -2.39 -0.02 1.33 16 42 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 43 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 44 H 0.06 2.58 7.03 -2.39 -0.02 2.56 16 45 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 46 H 0.03 1.64 6.94 -2.39 -0.02 1.62 16 47 H 0.05 2.39 6.20 -2.39 -0.01 2.38 16 48 H 0.01 0.63 7.85 -2.39 -0.02 0.61 16 49 H 0.03 1.98 6.74 -2.38 -0.02 1.97 16 50 H 0.00 0.07 7.42 -2.39 -0.02 0.05 16 51 H 0.24 14.57 8.31 -92.71 -0.77 13.80 16 Total: -1.00 -79.84 394.82 3.01 -76.83 By element: Atomic # 1 Polarization: 12.09 SS G_CDS: 0.92 Total: 13.01 kcal Atomic # 6 Polarization: 17.43 SS G_CDS: 7.29 Total: 24.71 kcal Atomic # 7 Polarization: -122.25 SS G_CDS: -6.76 Total: -129.00 kcal Atomic # 8 Polarization: -34.78 SS G_CDS: -0.47 Total: -35.25 kcal Atomic # 14 Polarization: 47.67 SS G_CDS: 2.03 Total: 49.69 kcal Total: -79.84 3.01 -76.83 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001692260905.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.291 kcal (2) G-P(sol) polarization free energy of solvation -79.835 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.544 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.829 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds