Wall clock time and date at job start Wed Apr 1 2020 04:45:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09007 * 109.47324 * 2 1 4 4 O 1.42903 * 109.47072 * 240.00864 * 2 1 3 5 5 C 1.42893 * 114.00333 * 89.99652 * 4 2 1 6 6 C 1.50706 * 109.47256 * 180.02562 * 5 4 2 7 7 C 1.38654 * 120.78734 * 269.71788 * 6 5 4 8 8 C 1.38209 * 119.15990 * 179.79481 * 7 6 5 9 9 N 1.31871 * 120.76052 * 0.49160 * 8 7 6 10 10 C 1.31867 * 121.73099 * 359.73825 * 9 8 7 11 11 C 1.38208 * 120.76306 * 0.02562 * 10 9 8 12 12 C 1.50700 * 109.47508 * 120.00497 * 2 1 3 13 13 O 1.21278 * 120.00135 * 115.00043 * 12 2 1 14 14 N 1.34776 * 119.99626 * 294.99828 * 12 2 1 15 15 C 1.46508 * 119.99573 * 174.90218 * 14 12 2 16 16 C 1.52999 * 110.01554 * 65.14592 * 15 14 12 17 17 N 1.46502 * 109.47354 * 55.07531 * 16 15 14 18 18 C 1.36934 * 120.00354 * 174.90218 * 17 16 15 19 19 H 1.07999 * 119.99820 * 0.02562 * 18 17 16 20 20 C 1.38812 * 120.00247 * 180.02562 * 18 17 16 21 21 N 1.31614 * 119.99801 * 359.72842 * 20 18 17 22 22 Si 1.86802 * 120.00030 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.47178 * 89.99944 * 22 20 18 24 24 H 1.48496 * 109.46881 * 210.00229 * 22 20 18 25 25 H 1.48496 * 109.46865 * 330.00075 * 22 20 18 26 26 C 1.54264 * 110.07205 * 186.56244 * 15 14 12 27 27 C 1.54887 * 104.19723 * 95.69711 * 26 15 14 28 28 C 1.54895 * 102.74794 * 37.94306 * 27 26 15 29 29 C 1.53876 * 110.03140 * 303.75440 * 15 14 12 30 30 H 1.08997 * 109.46694 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.46576 * 299.99423 * 1 2 3 32 32 H 1.08991 * 109.47378 * 59.99484 * 1 2 3 33 33 H 1.08995 * 109.47293 * 300.00137 * 5 4 2 34 34 H 1.09004 * 109.47224 * 59.99916 * 5 4 2 35 35 H 1.07997 * 120.42015 * 0.02562 * 7 6 5 36 36 H 1.07999 * 119.61846 * 180.20924 * 8 7 6 37 37 H 1.08001 * 119.61899 * 180.02562 * 10 9 8 38 38 H 1.07998 * 120.42019 * 180.02562 * 11 10 9 39 39 H 0.96993 * 120.00337 * 354.90755 * 14 12 2 40 40 H 1.09002 * 109.47480 * 295.07634 * 16 15 14 41 41 H 1.09002 * 109.47245 * 175.07696 * 16 15 14 42 42 H 0.97002 * 119.99595 * 354.90856 * 17 16 15 43 43 H 0.97001 * 120.00023 * 179.97438 * 21 20 18 44 44 H 1.09004 * 110.48450 * 214.37739 * 26 15 14 45 45 H 1.09007 * 110.48443 * 337.01862 * 26 15 14 46 46 H 1.08994 * 110.75793 * 279.63153 * 27 26 15 47 47 H 1.08992 * 110.75756 * 156.25284 * 27 26 15 48 48 H 1.09001 * 110.48740 * 203.38207 * 28 27 26 49 49 H 1.08996 * 110.48721 * 80.73286 * 28 27 26 50 50 H 1.08993 * 110.03704 * 359.95181 * 29 15 14 51 51 H 1.09000 * 110.02985 * 121.38511 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0063 -0.6735 -1.1669 5 6 2.2000 0.1831 -2.2941 6 6 2.7002 -0.6281 -3.4615 7 6 4.0590 -0.8072 -3.6711 8 6 4.4804 -1.5611 -4.7500 9 7 3.6074 -2.0983 -5.5796 10 6 2.3082 -1.9450 -5.4140 11 6 1.8126 -1.2082 -4.3549 12 6 2.0324 -0.7105 1.2304 13 8 2.6531 -1.7467 1.1213 14 7 1.7920 -0.1943 2.4519 15 6 2.1817 -0.9395 3.6516 16 6 3.7049 -1.0674 3.7169 17 7 4.3104 0.2647 3.6445 18 6 5.6642 0.4103 3.7898 19 1 6.2857 -0.4570 3.9574 20 6 6.2379 1.6725 3.7217 21 7 5.4812 2.7287 3.5121 22 14 8.0848 1.8709 3.9192 23 1 8.7381 1.7744 2.5891 24 1 8.3787 3.1967 4.5200 25 1 8.6058 0.7993 4.8054 26 6 1.6569 -0.2236 4.9133 27 6 0.3221 -0.9424 5.2305 28 6 0.6407 -2.4199 4.8916 29 6 1.5355 -2.3360 3.6378 30 1 -0.3632 -1.0277 -0.0005 31 1 -0.3632 0.5137 0.8900 32 1 -0.3633 0.5139 -0.8898 33 1 1.2537 0.6549 -2.5588 34 1 2.9319 0.9516 -2.0450 35 1 4.7790 -0.3663 -2.9975 36 1 5.5371 -1.7082 -4.9183 37 1 1.6234 -2.4005 -6.1140 38 1 0.7475 -1.0866 -4.2243 39 1 1.3610 0.6705 2.5368 40 1 4.0551 -1.6716 2.8800 41 1 3.9896 -1.5454 4.6543 42 1 3.7523 1.0435 3.4937 43 1 5.8820 3.6108 3.4648 44 1 2.3592 -0.3413 5.7386 45 1 1.4820 0.8325 4.7077 46 1 -0.4800 -0.5651 4.5965 47 1 0.0662 -0.8345 6.2845 48 1 -0.2759 -2.9667 4.6702 49 1 1.1788 -2.8923 5.7134 50 1 0.9314 -2.4590 2.7390 51 1 2.3072 -3.1048 3.6776 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001698633227.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:45:21 Heat of formation + Delta-G solvation = -37.628746 kcal Electronic energy + Delta-G solvation = -31286.449443 eV Core-core repulsion = 27185.970959 eV Total energy + Delta-G solvation = -4100.478485 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.39049 -40.12057 -38.42229 -36.94901 -34.29379 -33.64156 -33.16751 -31.45380 -31.34712 -30.57907 -28.62555 -27.91980 -27.02031 -24.64352 -24.00987 -23.60018 -22.19078 -22.12458 -20.82870 -20.34651 -18.88782 -17.52353 -17.15813 -16.96863 -16.60521 -16.41347 -15.78031 -15.73568 -15.31167 -14.88421 -14.56207 -14.44731 -14.17519 -13.90538 -13.80787 -13.73775 -13.23496 -13.17107 -13.00426 -12.84019 -12.69716 -12.45066 -12.11092 -11.86642 -11.70955 -11.54587 -11.31919 -11.11753 -10.94407 -10.88538 -10.81821 -10.67726 -10.44306 -10.40881 -10.03138 -9.99443 -9.86686 -9.67281 -9.63992 -9.28356 -9.15952 -8.77213 -8.53453 -6.83931 -5.74314 -2.99886 0.98097 1.00976 3.01673 3.05287 3.45099 3.50536 3.51927 3.65374 4.01438 4.32033 4.52689 4.55878 4.60243 4.69982 4.81699 4.84547 4.89915 4.91974 4.98099 5.06668 5.11157 5.14549 5.24736 5.43978 5.47875 5.54319 5.55837 5.60932 5.64781 5.65537 5.68959 5.79468 5.80634 5.90913 5.93224 5.98279 6.03912 6.17455 6.20586 6.30606 6.42002 6.50353 6.53997 6.54470 6.61272 6.88264 7.01018 7.16199 7.74399 7.80956 7.90770 8.45739 8.65821 9.57295 10.15814 10.52091 11.49087 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.007721 B = 0.003439 C = 0.002596 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3625.500898 B = 8140.210825 C =10782.938700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.068 3.932 3 H 0.088 0.912 4 O -0.347 6.347 5 C 0.097 3.903 6 C -0.041 4.041 7 C -0.146 4.146 8 C 0.096 3.904 9 N -0.484 5.484 10 C 0.092 3.908 11 C -0.153 4.153 12 C 0.521 3.479 13 O -0.511 6.511 14 N -0.709 5.709 15 C 0.172 3.828 16 C 0.144 3.856 17 N -0.726 5.726 18 C -0.229 4.229 19 H 0.068 0.932 20 C -0.016 4.016 21 N -0.938 5.938 22 Si 0.905 3.095 23 H -0.291 1.291 24 H -0.292 1.292 25 H -0.283 1.283 26 C -0.117 4.117 27 C -0.125 4.125 28 C -0.124 4.124 29 C -0.117 4.117 30 H 0.068 0.932 31 H 0.073 0.927 32 H 0.065 0.935 33 H 0.063 0.937 34 H 0.067 0.933 35 H 0.140 0.860 36 H 0.158 0.842 37 H 0.156 0.844 38 H 0.135 0.865 39 H 0.395 0.605 40 H 0.038 0.962 41 H 0.026 0.974 42 H 0.381 0.619 43 H 0.252 0.748 44 H 0.085 0.915 45 H 0.071 0.929 46 H 0.063 0.937 47 H 0.064 0.936 48 H 0.060 0.940 49 H 0.065 0.935 50 H 0.066 0.934 51 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.534 -4.466 -9.282 18.639 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.007 3.993 3 H 0.106 0.894 4 O -0.265 6.265 5 C 0.020 3.980 6 C -0.049 4.049 7 C -0.166 4.166 8 C -0.060 4.060 9 N -0.194 5.194 10 C -0.065 4.065 11 C -0.173 4.173 12 C 0.306 3.694 13 O -0.385 6.385 14 N -0.362 5.362 15 C 0.086 3.914 16 C 0.016 3.984 17 N -0.370 5.370 18 C -0.360 4.360 19 H 0.086 0.914 20 C -0.211 4.211 21 N -0.587 5.587 22 Si 0.736 3.264 23 H -0.219 1.219 24 H -0.219 1.219 25 H -0.208 1.208 26 C -0.155 4.155 27 C -0.162 4.162 28 C -0.162 4.162 29 C -0.156 4.156 30 H 0.087 0.913 31 H 0.092 0.908 32 H 0.084 0.916 33 H 0.081 0.919 34 H 0.086 0.914 35 H 0.157 0.843 36 H 0.175 0.825 37 H 0.173 0.827 38 H 0.153 0.847 39 H 0.229 0.771 40 H 0.055 0.945 41 H 0.044 0.956 42 H 0.215 0.785 43 H 0.062 0.938 44 H 0.104 0.896 45 H 0.090 0.910 46 H 0.081 0.919 47 H 0.083 0.917 48 H 0.079 0.921 49 H 0.084 0.916 50 H 0.085 0.915 51 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -14.561 -5.983 -10.046 18.675 hybrid contribution 0.401 1.760 0.802 1.975 sum -14.160 -4.223 -9.245 17.430 Atomic orbital electron populations 1.22205 0.93813 1.03530 1.02921 1.21959 0.94667 0.96884 0.85791 0.89397 1.88104 1.86661 1.33344 1.18412 1.21418 1.00059 0.91811 0.84673 1.19983 0.93676 0.96557 0.94671 1.22201 0.96068 0.99449 0.98912 1.22792 0.99725 0.93048 0.90483 1.67656 1.03344 1.19708 1.28661 1.22734 0.92016 0.95620 0.96130 1.22054 1.00865 0.98478 0.95907 1.19997 0.79716 0.85812 0.83922 1.90699 1.37890 1.23772 1.86171 1.45948 1.62499 1.22867 1.04869 1.21235 0.95769 0.90864 0.83497 1.21169 0.88654 0.89830 0.98722 1.42194 1.05072 1.02353 1.87342 1.19255 0.83994 0.92621 1.40156 0.91384 1.24659 0.97626 0.95524 1.03339 1.69641 1.33836 0.97751 1.57508 0.86211 0.85708 0.76853 0.77617 1.21884 1.21881 1.20825 1.22587 0.96560 0.99260 0.97073 1.22528 0.97429 0.95470 1.00798 1.22388 0.99152 0.96689 0.97977 1.22408 0.98875 0.96541 0.97764 0.91265 0.90815 0.91570 0.91916 0.91447 0.84253 0.82475 0.82715 0.84741 0.77069 0.94451 0.95645 0.78545 0.93773 0.89608 0.90997 0.91850 0.91681 0.92090 0.91593 0.91519 0.90959 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.60 9.48 37.16 0.35 -1.25 16 2 C 0.07 0.91 3.13 -27.88 -0.09 0.82 16 3 H 0.09 1.08 7.79 -51.93 -0.40 0.67 16 4 O -0.35 -5.18 9.51 -55.09 -0.52 -5.71 16 5 C 0.10 1.11 5.92 36.01 0.21 1.33 16 6 C -0.04 -0.48 5.55 -104.31 -0.58 -1.06 16 7 C -0.15 -1.78 9.82 -39.44 -0.39 -2.16 16 8 C 0.10 1.12 11.18 -17.55 -0.20 0.93 16 9 N -0.48 -6.02 10.36 -13.25 -0.14 -6.16 16 10 C 0.09 0.96 11.18 -17.55 -0.20 0.77 16 11 C -0.15 -1.58 9.82 -39.44 -0.39 -1.97 16 12 C 0.52 8.84 6.22 -10.99 -0.07 8.77 16 13 O -0.51 -10.86 13.78 -14.30 -0.20 -11.05 16 14 N -0.71 -10.79 4.46 -46.57 -0.21 -11.00 16 15 C 0.17 2.80 0.57 -130.70 -0.07 2.72 16 16 C 0.14 3.09 4.64 -4.04 -0.02 3.07 16 17 N -0.73 -18.28 5.27 -59.91 -0.32 -18.60 16 18 C -0.23 -6.51 9.99 -15.06 -0.15 -6.66 16 19 H 0.07 1.93 7.83 -52.49 -0.41 1.51 16 20 C -0.02 -0.47 5.50 -17.43 -0.10 -0.57 16 21 N -0.94 -27.82 13.06 55.49 0.72 -27.10 16 22 Si 0.90 22.72 29.55 -169.99 -5.02 17.69 16 23 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 24 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 25 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 26 C -0.12 -1.67 5.75 -25.07 -0.14 -1.81 16 27 C -0.12 -1.40 6.91 -24.74 -0.17 -1.57 16 28 C -0.12 -1.46 6.83 -25.07 -0.17 -1.63 16 29 C -0.12 -1.72 5.22 -25.61 -0.13 -1.86 16 30 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.07 0.59 8.10 -51.93 -0.42 0.17 16 32 H 0.07 0.51 7.87 -51.93 -0.41 0.10 16 33 H 0.06 0.55 7.83 -51.93 -0.41 0.14 16 34 H 0.07 0.76 8.04 -51.93 -0.42 0.34 16 35 H 0.14 1.61 8.06 -52.49 -0.42 1.19 16 36 H 0.16 1.45 8.06 -52.49 -0.42 1.03 16 37 H 0.16 1.15 8.06 -52.49 -0.42 0.73 16 38 H 0.13 1.05 8.06 -52.49 -0.42 0.63 16 39 H 0.40 5.06 8.19 -40.82 -0.33 4.73 16 40 H 0.04 0.91 6.56 -51.93 -0.34 0.57 16 41 H 0.03 0.55 8.04 -51.93 -0.42 0.13 16 42 H 0.38 9.74 7.19 -40.82 -0.29 9.45 16 43 H 0.25 7.29 8.31 -40.82 -0.34 6.95 16 44 H 0.09 1.36 7.78 -51.93 -0.40 0.95 16 45 H 0.07 1.01 7.70 -51.93 -0.40 0.61 16 46 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 47 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 48 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 49 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 50 H 0.07 1.02 6.99 -51.93 -0.36 0.65 16 51 H 0.07 1.15 7.67 -51.93 -0.40 0.75 16 LS Contribution 413.86 15.07 6.24 6.24 Total: -1.00 -35.52 413.86 -10.10 -45.62 By element: Atomic # 1 Polarization: 20.55 SS G_CDS: -8.36 Total: 12.18 kcal Atomic # 6 Polarization: 0.17 SS G_CDS: -2.30 Total: -2.13 kcal Atomic # 7 Polarization: -62.91 SS G_CDS: 0.06 Total: -62.85 kcal Atomic # 8 Polarization: -16.04 SS G_CDS: -0.72 Total: -16.76 kcal Atomic # 14 Polarization: 22.72 SS G_CDS: -5.02 Total: 17.69 kcal Total LS contribution 6.24 Total: 6.24 kcal Total: -35.52 -10.10 -45.62 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698633227.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.995 kcal (2) G-P(sol) polarization free energy of solvation -35.523 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.623 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.629 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds