Wall clock time and date at job start Wed Apr 1 2020 04:45:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09007 * 109.47324 * 2 1 4 4 O 1.42903 * 109.47072 * 240.00864 * 2 1 3 5 5 C 1.42893 * 114.00333 * 89.99652 * 4 2 1 6 6 C 1.50706 * 109.47256 * 180.02562 * 5 4 2 7 7 C 1.38654 * 120.78734 * 269.71788 * 6 5 4 8 8 C 1.38209 * 119.15990 * 179.79481 * 7 6 5 9 9 N 1.31871 * 120.76052 * 0.49160 * 8 7 6 10 10 C 1.31867 * 121.73099 * 359.73825 * 9 8 7 11 11 C 1.38208 * 120.76306 * 0.02562 * 10 9 8 12 12 C 1.50700 * 109.47508 * 120.00497 * 2 1 3 13 13 O 1.21278 * 120.00135 * 115.00043 * 12 2 1 14 14 N 1.34776 * 119.99626 * 294.99828 * 12 2 1 15 15 C 1.46508 * 119.99573 * 174.90218 * 14 12 2 16 16 C 1.52999 * 110.01554 * 65.14592 * 15 14 12 17 17 N 1.46502 * 109.47354 * 55.07531 * 16 15 14 18 18 C 1.36934 * 120.00354 * 174.90218 * 17 16 15 19 19 H 1.07999 * 119.99820 * 0.02562 * 18 17 16 20 20 C 1.38812 * 120.00247 * 180.02562 * 18 17 16 21 21 N 1.31614 * 119.99801 * 359.72842 * 20 18 17 22 22 Si 1.86802 * 120.00030 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.47178 * 89.99944 * 22 20 18 24 24 H 1.48496 * 109.46881 * 210.00229 * 22 20 18 25 25 H 1.48496 * 109.46865 * 330.00075 * 22 20 18 26 26 C 1.54264 * 110.07205 * 186.56244 * 15 14 12 27 27 C 1.54887 * 104.19723 * 95.69711 * 26 15 14 28 28 C 1.54895 * 102.74794 * 37.94306 * 27 26 15 29 29 C 1.53876 * 110.03140 * 303.75440 * 15 14 12 30 30 H 1.08997 * 109.46694 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.46576 * 299.99423 * 1 2 3 32 32 H 1.08991 * 109.47378 * 59.99484 * 1 2 3 33 33 H 1.08995 * 109.47293 * 300.00137 * 5 4 2 34 34 H 1.09004 * 109.47224 * 59.99916 * 5 4 2 35 35 H 1.07997 * 120.42015 * 0.02562 * 7 6 5 36 36 H 1.07999 * 119.61846 * 180.20924 * 8 7 6 37 37 H 1.08001 * 119.61899 * 180.02562 * 10 9 8 38 38 H 1.07998 * 120.42019 * 180.02562 * 11 10 9 39 39 H 0.96993 * 120.00337 * 354.90755 * 14 12 2 40 40 H 1.09002 * 109.47480 * 295.07634 * 16 15 14 41 41 H 1.09002 * 109.47245 * 175.07696 * 16 15 14 42 42 H 0.97002 * 119.99595 * 354.90856 * 17 16 15 43 43 H 0.97001 * 120.00023 * 179.97438 * 21 20 18 44 44 H 1.09004 * 110.48450 * 214.37739 * 26 15 14 45 45 H 1.09007 * 110.48443 * 337.01862 * 26 15 14 46 46 H 1.08994 * 110.75793 * 279.63153 * 27 26 15 47 47 H 1.08992 * 110.75756 * 156.25284 * 27 26 15 48 48 H 1.09001 * 110.48740 * 203.38207 * 28 27 26 49 49 H 1.08996 * 110.48721 * 80.73286 * 28 27 26 50 50 H 1.08993 * 110.03704 * 359.95181 * 29 15 14 51 51 H 1.09000 * 110.02985 * 121.38511 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0063 -0.6735 -1.1669 5 6 2.2000 0.1831 -2.2941 6 6 2.7002 -0.6281 -3.4615 7 6 4.0590 -0.8072 -3.6711 8 6 4.4804 -1.5611 -4.7500 9 7 3.6074 -2.0983 -5.5796 10 6 2.3082 -1.9450 -5.4140 11 6 1.8126 -1.2082 -4.3549 12 6 2.0324 -0.7105 1.2304 13 8 2.6531 -1.7467 1.1213 14 7 1.7920 -0.1943 2.4519 15 6 2.1817 -0.9395 3.6516 16 6 3.7049 -1.0674 3.7169 17 7 4.3104 0.2647 3.6445 18 6 5.6642 0.4103 3.7898 19 1 6.2857 -0.4570 3.9574 20 6 6.2379 1.6725 3.7217 21 7 5.4812 2.7287 3.5121 22 14 8.0848 1.8709 3.9192 23 1 8.7381 1.7744 2.5891 24 1 8.3787 3.1967 4.5200 25 1 8.6058 0.7993 4.8054 26 6 1.6569 -0.2236 4.9133 27 6 0.3221 -0.9424 5.2305 28 6 0.6407 -2.4199 4.8916 29 6 1.5355 -2.3360 3.6378 30 1 -0.3632 -1.0277 -0.0005 31 1 -0.3632 0.5137 0.8900 32 1 -0.3633 0.5139 -0.8898 33 1 1.2537 0.6549 -2.5588 34 1 2.9319 0.9516 -2.0450 35 1 4.7790 -0.3663 -2.9975 36 1 5.5371 -1.7082 -4.9183 37 1 1.6234 -2.4005 -6.1140 38 1 0.7475 -1.0866 -4.2243 39 1 1.3610 0.6705 2.5368 40 1 4.0551 -1.6716 2.8800 41 1 3.9896 -1.5454 4.6543 42 1 3.7523 1.0435 3.4937 43 1 5.8820 3.6108 3.4648 44 1 2.3592 -0.3413 5.7386 45 1 1.4820 0.8325 4.7077 46 1 -0.4800 -0.5651 4.5965 47 1 0.0662 -0.8345 6.2845 48 1 -0.2759 -2.9667 4.6702 49 1 1.1788 -2.8923 5.7134 50 1 0.9314 -2.4590 2.7390 51 1 2.3072 -3.1048 3.6776 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001698633227.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:45:20 Heat of formation + Delta-G solvation = -61.047451 kcal Electronic energy + Delta-G solvation = -31287.464955 eV Core-core repulsion = 27185.970959 eV Total energy + Delta-G solvation = -4101.493996 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.54580 -41.12000 -39.53337 -38.17603 -36.18517 -34.76548 -34.31742 -33.12595 -32.18394 -31.89863 -29.78702 -29.39254 -27.90279 -26.39176 -25.14262 -24.44768 -23.98687 -23.00502 -21.98341 -21.44499 -20.29161 -19.16358 -18.58353 -18.08637 -17.52468 -17.41723 -17.09192 -16.58814 -16.54769 -16.30943 -15.99821 -15.67557 -15.51678 -15.16094 -15.00992 -14.80652 -14.60823 -14.52280 -14.21776 -14.06383 -13.69582 -13.56560 -13.30206 -13.20166 -12.97932 -12.83631 -12.67379 -12.52006 -12.33329 -12.20231 -12.14666 -11.97111 -11.89400 -11.76714 -11.71981 -11.38872 -11.10477 -10.91971 -10.78251 -10.51224 -10.34116 -10.12519 -9.93170 -8.96497 -7.97082 -5.22986 0.09985 0.16014 1.43406 1.44815 1.53079 1.71382 1.94596 2.53368 2.69850 3.07450 3.35145 3.50066 3.54391 3.64879 3.71861 3.73178 3.79253 3.92653 3.98540 4.07676 4.12036 4.16615 4.17859 4.35527 4.39614 4.41112 4.53750 4.57204 4.65980 4.69885 4.73142 4.81755 4.82410 4.84624 4.88190 4.93522 4.95513 5.10560 5.11015 5.19665 5.21656 5.27096 5.32261 5.36259 5.45602 5.51156 5.71634 5.74184 6.00131 6.25976 6.67785 6.95584 7.33548 7.38349 8.07028 8.37541 9.25734 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.007721 B = 0.003439 C = 0.002596 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3625.500898 B = 8140.210825 C =10782.938700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.070 3.930 3 H 0.098 0.902 4 O -0.379 6.379 5 C 0.095 3.905 6 C -0.058 4.058 7 C -0.167 4.167 8 C 0.085 3.915 9 N -0.507 5.507 10 C 0.087 3.913 11 C -0.149 4.149 12 C 0.511 3.489 13 O -0.564 6.564 14 N -0.699 5.699 15 C 0.175 3.825 16 C 0.148 3.852 17 N -0.728 5.728 18 C -0.247 4.247 19 H 0.060 0.940 20 C -0.065 4.065 21 N -0.960 5.960 22 Si 0.966 3.034 23 H -0.291 1.291 24 H -0.288 1.288 25 H -0.275 1.275 26 C -0.114 4.114 27 C -0.111 4.111 28 C -0.117 4.117 29 C -0.112 4.112 30 H 0.059 0.941 31 H 0.093 0.907 32 H 0.092 0.908 33 H 0.097 0.903 34 H 0.061 0.939 35 H 0.133 0.867 36 H 0.172 0.828 37 H 0.186 0.814 38 H 0.164 0.836 39 H 0.409 0.591 40 H 0.003 0.997 41 H 0.021 0.979 42 H 0.378 0.622 43 H 0.252 0.748 44 H 0.066 0.934 45 H 0.075 0.925 46 H 0.082 0.918 47 H 0.084 0.916 48 H 0.083 0.917 49 H 0.068 0.932 50 H 0.061 0.939 51 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.082 -3.781 -9.257 20.663 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.009 3.991 3 H 0.116 0.884 4 O -0.297 6.297 5 C 0.020 3.980 6 C -0.066 4.066 7 C -0.187 4.187 8 C -0.071 4.071 9 N -0.217 5.217 10 C -0.070 4.070 11 C -0.169 4.169 12 C 0.297 3.703 13 O -0.442 6.442 14 N -0.352 5.352 15 C 0.089 3.911 16 C 0.020 3.980 17 N -0.371 5.371 18 C -0.379 4.379 19 H 0.078 0.922 20 C -0.258 4.258 21 N -0.611 5.611 22 Si 0.795 3.205 23 H -0.219 1.219 24 H -0.214 1.214 25 H -0.200 1.200 26 C -0.152 4.152 27 C -0.148 4.148 28 C -0.155 4.155 29 C -0.151 4.151 30 H 0.078 0.922 31 H 0.111 0.889 32 H 0.111 0.889 33 H 0.115 0.885 34 H 0.079 0.921 35 H 0.151 0.849 36 H 0.190 0.810 37 H 0.203 0.797 38 H 0.182 0.818 39 H 0.246 0.754 40 H 0.021 0.979 41 H 0.039 0.961 42 H 0.211 0.789 43 H 0.061 0.939 44 H 0.085 0.915 45 H 0.093 0.907 46 H 0.101 0.899 47 H 0.103 0.897 48 H 0.102 0.898 49 H 0.087 0.913 50 H 0.080 0.920 51 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -17.135 -5.284 -10.007 20.535 hybrid contribution 1.241 1.501 0.756 2.090 sum -15.894 -3.783 -9.250 18.775 Atomic orbital electron populations 1.22178 0.90354 1.03657 1.05206 1.22058 0.97106 0.96176 0.83730 0.88434 1.88060 1.87185 1.35023 1.19482 1.21577 1.01626 0.91261 0.83571 1.20233 0.93848 0.97166 0.95338 1.22309 0.96660 1.00340 0.99398 1.23050 1.00630 0.92986 0.90395 1.67700 1.04418 1.20385 1.29166 1.23312 0.91840 0.95171 0.96628 1.22371 1.02110 0.97382 0.95027 1.20846 0.78735 0.85358 0.85330 1.90673 1.40273 1.26232 1.87010 1.45886 1.61771 1.23241 1.04307 1.21145 0.92218 0.92661 0.85105 1.21181 0.92494 0.87527 0.96811 1.42227 1.04210 1.03558 1.87059 1.19529 0.85542 0.92652 1.40186 0.92151 1.25373 1.01696 0.95234 1.03474 1.69757 1.35287 0.97893 1.58137 0.85254 0.80851 0.76938 0.77422 1.21887 1.21409 1.20015 1.22537 0.98025 0.99619 0.95044 1.22491 0.95748 0.94120 1.02448 1.22379 0.99297 0.97662 0.96158 1.22326 0.98635 0.94675 0.99431 0.92158 0.88851 0.88945 0.88479 0.92055 0.84885 0.81046 0.79669 0.81817 0.75441 0.97912 0.96124 0.78860 0.93915 0.91495 0.90677 0.89909 0.89720 0.89826 0.91329 0.91987 0.93212 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.57 9.48 71.98 0.68 -1.89 16 2 C 0.07 1.81 3.13 29.85 0.09 1.91 16 3 H 0.10 2.29 7.79 -2.38 -0.02 2.27 16 4 O -0.38 -11.24 9.51 -129.99 -1.24 -12.48 16 5 C 0.10 2.12 5.92 71.24 0.42 2.54 16 6 C -0.06 -1.35 5.55 -19.66 -0.11 -1.46 16 7 C -0.17 -4.23 9.82 22.36 0.22 -4.01 16 8 C 0.09 2.05 11.18 84.68 0.95 2.99 16 9 N -0.51 -12.43 10.36 -195.84 -2.03 -14.46 16 10 C 0.09 1.70 11.18 84.68 0.95 2.65 16 11 C -0.15 -2.83 9.82 22.36 0.22 -2.61 16 12 C 0.51 17.61 6.22 87.66 0.55 18.16 16 13 O -0.56 -25.17 13.78 15.96 0.22 -24.95 16 14 N -0.70 -21.16 4.46 -419.64 -1.87 -23.03 16 15 C 0.17 5.75 0.57 4.33 0.00 5.75 16 16 C 0.15 6.61 4.64 86.38 0.40 7.01 16 17 N -0.73 -37.79 5.27 -343.45 -1.81 -39.60 16 18 C -0.25 -14.40 9.99 84.03 0.84 -13.56 16 19 H 0.06 3.53 7.83 -2.91 -0.02 3.51 16 20 C -0.06 -3.76 5.50 84.86 0.47 -3.30 16 21 N -0.96 -57.30 13.06 21.65 0.28 -57.02 16 22 Si 0.97 47.08 29.55 68.60 2.03 49.11 16 23 H -0.29 -14.16 7.11 99.48 0.71 -13.45 16 24 H -0.29 -13.77 7.11 99.48 0.71 -13.06 16 25 H -0.27 -12.95 7.11 99.48 0.71 -12.24 16 26 C -0.11 -3.14 5.75 31.67 0.18 -2.96 16 27 C -0.11 -2.14 6.91 31.89 0.22 -1.92 16 28 C -0.12 -2.50 6.83 31.67 0.22 -2.28 16 29 C -0.11 -3.30 5.22 31.32 0.16 -3.13 16 30 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 31 H 0.09 1.16 8.10 -2.39 -0.02 1.14 16 32 H 0.09 1.06 7.87 -2.39 -0.02 1.04 16 33 H 0.10 1.43 7.83 -2.39 -0.02 1.41 16 34 H 0.06 1.39 8.04 -2.38 -0.02 1.37 16 35 H 0.13 3.36 8.06 -2.91 -0.02 3.34 16 36 H 0.17 3.31 8.06 -2.91 -0.02 3.29 16 37 H 0.19 2.29 8.06 -2.91 -0.02 2.27 16 38 H 0.16 2.03 8.06 -2.91 -0.02 2.01 16 39 H 0.41 9.96 8.19 -92.71 -0.76 9.20 16 40 H 0.00 0.15 6.56 -2.39 -0.02 0.14 16 41 H 0.02 0.94 8.04 -2.39 -0.02 0.92 16 42 H 0.38 19.75 7.19 -92.71 -0.67 19.08 16 43 H 0.25 14.54 8.31 -92.71 -0.77 13.77 16 44 H 0.07 2.10 7.78 -2.39 -0.02 2.08 16 45 H 0.07 2.01 7.70 -2.38 -0.02 1.99 16 46 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 47 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 48 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 49 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 50 H 0.06 1.88 6.99 -2.39 -0.02 1.87 16 51 H 0.05 1.66 7.67 -2.39 -0.02 1.65 16 Total: -1.00 -79.82 413.86 1.55 -78.27 By element: Atomic # 1 Polarization: 40.75 SS G_CDS: -0.49 Total: 40.25 kcal Atomic # 6 Polarization: -2.58 SS G_CDS: 6.46 Total: 3.88 kcal Atomic # 7 Polarization: -128.67 SS G_CDS: -5.43 Total: -134.10 kcal Atomic # 8 Polarization: -36.41 SS G_CDS: -1.02 Total: -37.42 kcal Atomic # 14 Polarization: 47.08 SS G_CDS: 2.03 Total: 49.11 kcal Total: -79.82 1.55 -78.27 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698633227.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.226 kcal (2) G-P(sol) polarization free energy of solvation -79.824 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.598 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.274 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds