Wall clock time and date at job start Wed Apr 1 2020 04:45:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09005 * 109.47177 * 2 1 4 4 O 1.42900 * 109.47548 * 120.00052 * 2 1 3 5 5 C 1.42902 * 114.00244 * 270.00360 * 4 2 1 6 6 C 1.50694 * 109.47138 * 179.97438 * 5 4 2 7 7 C 1.38648 * 120.79205 * 269.72118 * 6 5 4 8 8 C 1.38207 * 119.16293 * 179.80113 * 7 6 5 9 9 N 1.31862 * 120.76314 * 0.47932 * 8 7 6 10 10 C 1.31869 * 121.72676 * 359.74784 * 9 8 7 11 11 C 1.38202 * 120.76542 * 0.02562 * 10 9 8 12 12 C 1.50694 * 109.47129 * 240.00406 * 2 1 3 13 13 O 1.21286 * 120.00297 * 245.00091 * 12 2 1 14 14 N 1.34779 * 120.00275 * 64.99900 * 12 2 1 15 15 C 1.46494 * 120.00386 * 174.56223 * 14 12 2 16 16 C 1.53005 * 110.43455 * 302.95295 * 15 14 12 17 17 N 1.46496 * 109.46959 * 307.76511 * 16 15 14 18 18 C 1.36936 * 119.99991 * 174.95531 * 17 16 15 19 19 H 1.07998 * 120.00011 * 359.97438 * 18 17 16 20 20 C 1.38812 * 120.00042 * 179.97438 * 18 17 16 21 21 N 1.31612 * 120.00162 * 0.02562 * 20 18 17 22 22 Si 1.86807 * 119.99980 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.47081 * 90.00107 * 22 20 18 24 24 H 1.48495 * 109.46940 * 209.99887 * 22 20 18 25 25 H 1.48499 * 109.47144 * 330.00275 * 22 20 18 26 26 C 1.54895 * 110.48989 * 180.41125 * 15 14 12 27 27 C 1.55235 * 102.58523 * 279.18843 * 26 15 14 28 28 C 1.54268 * 104.23482 * 322.07962 * 27 26 15 29 29 C 1.53874 * 106.59500 * 23.61250 * 28 27 26 30 30 H 1.09005 * 109.47177 * 179.97438 * 1 2 3 31 31 H 1.09006 * 109.46914 * 299.99655 * 1 2 3 32 32 H 1.09001 * 109.47475 * 59.99497 * 1 2 3 33 33 H 1.09001 * 109.46776 * 299.99999 * 5 4 2 34 34 H 1.08998 * 109.47057 * 59.99267 * 5 4 2 35 35 H 1.07998 * 120.41847 * 359.97438 * 7 6 5 36 36 H 1.08000 * 119.61368 * 180.20100 * 8 7 6 37 37 H 1.07999 * 119.61862 * 179.97438 * 10 9 8 38 38 H 1.07999 * 120.41711 * 179.97438 * 11 10 9 39 39 H 0.97003 * 119.99530 * 354.55837 * 14 12 2 40 40 H 1.09006 * 109.46938 * 67.76433 * 16 15 14 41 41 H 1.08994 * 109.47070 * 187.76238 * 16 15 14 42 42 H 0.96998 * 120.00210 * 354.95007 * 17 16 15 43 43 H 0.97001 * 120.00351 * 180.02562 * 21 20 18 44 44 H 1.08998 * 110.75175 * 37.57901 * 26 15 14 45 45 H 1.08996 * 110.75253 * 160.94838 * 26 15 14 46 46 H 1.09000 * 110.46202 * 203.39297 * 27 26 15 47 47 H 1.08993 * 110.47483 * 80.77540 * 27 26 15 48 48 H 1.09002 * 110.03132 * 264.33386 * 28 27 26 49 49 H 1.08999 * 110.03294 * 142.89629 * 28 27 26 50 50 H 1.08997 * 110.03642 * 240.71495 * 29 28 27 51 51 H 1.09002 * 110.02887 * 119.28457 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0064 -0.6736 1.1667 5 6 2.2001 0.1829 2.2941 6 6 2.7004 -0.6285 3.4613 7 6 1.8131 -1.2040 4.3579 8 6 2.3086 -1.9449 5.4141 9 7 3.6078 -2.0990 5.5791 10 6 4.4807 -1.5623 4.7490 11 6 4.0591 -0.8123 3.6675 12 6 2.0323 -0.7103 -1.2305 13 8 2.6529 -1.7466 -1.1216 14 7 1.7918 -0.1940 -2.4520 15 6 2.3801 -0.8180 -3.6398 16 6 3.9038 -0.8757 -3.5136 17 7 4.4181 0.4578 -3.1921 18 6 5.7504 0.6326 -2.9285 19 1 6.4220 -0.2126 -2.9572 20 6 6.2378 1.8963 -2.6243 21 7 5.4193 2.9263 -2.5888 22 14 8.0552 2.1347 -2.2640 23 1 8.7754 2.4330 -3.5279 24 1 8.2279 3.2655 -1.3171 25 1 8.6069 0.8950 -1.6606 26 6 1.9709 -0.0442 -4.9177 27 6 0.5462 -0.5909 -5.2025 28 6 0.6356 -2.0884 -4.8426 29 6 1.8017 -2.2327 -3.8490 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8901 32 1 -0.3634 0.5139 -0.8899 33 1 2.9319 0.9513 2.0450 34 1 1.2538 0.6546 2.5588 35 1 0.7481 -1.0773 4.2309 36 1 1.6239 -2.3992 6.1150 37 1 5.5373 -1.7100 4.9167 38 1 4.7789 -0.3750 2.9914 39 1 1.2292 0.5907 -2.5447 40 1 4.1766 -1.5714 -2.7200 41 1 4.3339 -1.2134 -4.4565 42 1 3.8148 1.2170 -3.1660 43 1 5.7599 3.8095 -2.3767 44 1 1.9448 1.0288 -4.7277 45 1 2.6456 -0.2754 -5.7419 46 1 0.2936 -0.4661 -6.2555 47 1 -0.1877 -0.0901 -4.5713 48 1 0.8337 -2.6766 -5.7387 49 1 -0.2939 -2.4168 -4.3777 50 1 2.5656 -2.8910 -4.2628 51 1 1.4379 -2.6312 -2.9019 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001698633228.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:45:25 Heat of formation + Delta-G solvation = -38.528204 kcal Electronic energy + Delta-G solvation = -31536.733794 eV Core-core repulsion = 27436.216306 eV Total energy + Delta-G solvation = -4100.517488 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.32811 -40.06685 -38.35551 -36.87979 -34.30934 -33.57611 -33.05837 -31.43716 -31.28763 -30.54232 -28.60684 -28.02860 -26.94731 -24.61387 -24.04151 -23.53966 -22.18877 -22.06766 -20.69271 -20.25716 -18.91808 -17.50775 -17.14420 -16.92346 -16.53622 -16.36864 -15.71552 -15.67047 -15.25290 -14.79641 -14.60657 -14.42746 -14.13284 -13.91126 -13.83467 -13.69373 -13.21870 -13.12392 -12.95765 -12.75740 -12.67804 -12.32664 -12.10571 -11.99212 -11.63234 -11.43210 -11.30173 -11.20493 -11.03436 -10.90019 -10.82439 -10.69839 -10.36628 -10.31531 -10.02095 -9.91030 -9.78897 -9.67693 -9.58361 -9.22401 -9.09469 -8.76171 -8.50203 -6.84745 -5.74542 -3.00098 1.04097 1.07326 3.03636 3.16829 3.44397 3.50007 3.52241 3.70973 4.07857 4.37445 4.59068 4.59833 4.63642 4.73144 4.81540 4.87539 4.95547 4.97090 5.03892 5.05196 5.19153 5.21588 5.33967 5.48359 5.52622 5.54282 5.60282 5.63097 5.64017 5.70470 5.71374 5.76541 5.86995 5.92857 5.96387 6.00147 6.02743 6.20488 6.24795 6.32473 6.37145 6.43735 6.58127 6.60180 6.62472 6.91319 7.05190 7.16948 7.74969 7.86432 7.95127 8.45417 8.71656 9.57122 10.15148 10.51682 11.48757 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.007393 B = 0.003874 C = 0.002791 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3786.656186 B = 7226.228570 C =10031.501237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.069 3.931 3 H 0.091 0.909 4 O -0.347 6.347 5 C 0.097 3.903 6 C -0.040 4.040 7 C -0.154 4.154 8 C 0.091 3.909 9 N -0.485 5.485 10 C 0.096 3.904 11 C -0.145 4.145 12 C 0.528 3.472 13 O -0.513 6.513 14 N -0.707 5.707 15 C 0.172 3.828 16 C 0.144 3.856 17 N -0.724 5.724 18 C -0.227 4.227 19 H 0.068 0.932 20 C -0.016 4.016 21 N -0.938 5.938 22 Si 0.903 3.097 23 H -0.291 1.291 24 H -0.293 1.293 25 H -0.283 1.283 26 C -0.119 4.119 27 C -0.125 4.125 28 C -0.122 4.122 29 C -0.124 4.124 30 H 0.068 0.932 31 H 0.065 0.935 32 H 0.071 0.929 33 H 0.069 0.931 34 H 0.062 0.938 35 H 0.134 0.866 36 H 0.155 0.845 37 H 0.158 0.842 38 H 0.140 0.860 39 H 0.394 0.606 40 H 0.045 0.955 41 H 0.021 0.979 42 H 0.381 0.619 43 H 0.252 0.748 44 H 0.075 0.925 45 H 0.084 0.916 46 H 0.063 0.937 47 H 0.061 0.939 48 H 0.060 0.940 49 H 0.057 0.943 50 H 0.070 0.930 51 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.090 -4.870 6.161 17.012 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.008 3.992 3 H 0.109 0.891 4 O -0.265 6.265 5 C 0.020 3.980 6 C -0.048 4.048 7 C -0.174 4.174 8 C -0.066 4.066 9 N -0.194 5.194 10 C -0.061 4.061 11 C -0.165 4.165 12 C 0.312 3.688 13 O -0.387 6.387 14 N -0.359 5.359 15 C 0.086 3.914 16 C 0.016 3.984 17 N -0.368 5.368 18 C -0.359 4.359 19 H 0.086 0.914 20 C -0.211 4.211 21 N -0.588 5.588 22 Si 0.735 3.265 23 H -0.218 1.218 24 H -0.219 1.219 25 H -0.208 1.208 26 C -0.157 4.157 27 C -0.162 4.162 28 C -0.160 4.160 29 C -0.163 4.163 30 H 0.087 0.913 31 H 0.084 0.916 32 H 0.090 0.910 33 H 0.087 0.913 34 H 0.080 0.920 35 H 0.152 0.848 36 H 0.172 0.828 37 H 0.175 0.825 38 H 0.158 0.842 39 H 0.228 0.772 40 H 0.063 0.937 41 H 0.038 0.962 42 H 0.215 0.785 43 H 0.062 0.938 44 H 0.094 0.906 45 H 0.102 0.898 46 H 0.082 0.918 47 H 0.080 0.920 48 H 0.079 0.921 49 H 0.076 0.924 50 H 0.089 0.911 51 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -14.090 -6.370 6.992 16.970 hybrid contribution 0.274 1.732 -0.589 1.850 sum -13.816 -4.639 6.403 15.918 Atomic orbital electron populations 1.22227 0.94065 1.03422 1.02865 1.21951 0.94435 0.97078 0.85777 0.89130 1.88090 1.86666 1.33330 1.18418 1.21416 1.00057 0.91855 0.84635 1.19987 0.93669 0.96472 0.94654 1.22049 1.00829 0.98534 0.95943 1.22718 0.92019 0.95686 0.96165 1.67650 1.03340 1.19756 1.28673 1.22785 0.99705 0.93120 0.90481 1.22220 0.96135 0.99307 0.98866 1.19933 0.79699 0.85358 0.83804 1.90678 1.38841 1.22931 1.86211 1.45700 1.52331 1.32521 1.05386 1.21351 0.94173 0.91992 0.83863 1.21072 0.88836 0.90175 0.98319 1.42182 1.06791 1.03565 1.84280 1.19253 0.85068 0.93345 1.38185 0.91410 1.24641 0.97573 0.95687 1.03175 1.69640 1.33426 0.98974 1.56742 0.86234 0.85476 0.77170 0.77666 1.21837 1.21899 1.20833 1.22795 0.96047 1.00101 0.96737 1.22456 0.97252 0.95723 1.00807 1.22130 0.98416 0.96490 0.98934 1.22451 0.97495 0.96682 0.99718 0.91307 0.91567 0.90963 0.91311 0.92001 0.84782 0.82763 0.82495 0.84171 0.77241 0.93721 0.96182 0.78523 0.93793 0.90588 0.89789 0.91819 0.91977 0.92082 0.92397 0.91083 0.90806 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.71 9.47 37.16 0.35 -1.35 16 2 C 0.07 0.98 3.13 -27.89 -0.09 0.90 16 3 H 0.09 1.25 7.79 -51.93 -0.40 0.85 16 4 O -0.35 -5.51 9.51 -55.09 -0.52 -6.03 16 5 C 0.10 1.22 5.92 36.00 0.21 1.43 16 6 C -0.04 -0.51 5.55 -104.32 -0.58 -1.09 16 7 C -0.15 -1.69 9.82 -39.44 -0.39 -2.08 16 8 C 0.09 1.01 11.18 -17.55 -0.20 0.81 16 9 N -0.48 -6.32 10.36 -13.25 -0.14 -6.46 16 10 C 0.10 1.19 11.18 -17.55 -0.20 0.99 16 11 C -0.15 -1.91 9.82 -39.44 -0.39 -2.29 16 12 C 0.53 9.22 6.42 -10.99 -0.07 9.15 16 13 O -0.51 -11.10 13.47 -14.31 -0.19 -11.29 16 14 N -0.71 -10.82 4.51 -46.07 -0.21 -11.03 16 15 C 0.17 2.79 0.39 -130.16 -0.05 2.74 16 16 C 0.14 3.07 4.72 -4.04 -0.02 3.05 16 17 N -0.72 -18.12 5.30 -59.91 -0.32 -18.44 16 18 C -0.23 -6.43 9.99 -15.06 -0.15 -6.58 16 19 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 20 C -0.02 -0.45 5.50 -17.43 -0.10 -0.54 16 21 N -0.94 -27.62 13.06 55.49 0.72 -26.89 16 22 Si 0.90 22.63 29.55 -169.99 -5.02 17.61 16 23 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 24 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 25 H -0.28 -7.01 7.11 56.52 0.40 -6.60 16 26 C -0.12 -1.66 5.67 -24.55 -0.14 -1.80 16 27 C -0.12 -1.37 6.80 -24.88 -0.17 -1.54 16 28 C -0.12 -1.40 6.80 -25.61 -0.17 -1.57 16 29 C -0.12 -1.82 5.68 -25.61 -0.15 -1.97 16 30 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 31 H 0.07 0.55 7.87 -51.93 -0.41 0.15 16 32 H 0.07 0.60 7.76 -51.93 -0.40 0.20 16 33 H 0.07 0.88 8.05 -51.93 -0.42 0.46 16 34 H 0.06 0.60 7.83 -51.93 -0.41 0.19 16 35 H 0.13 1.13 8.06 -52.49 -0.42 0.71 16 36 H 0.16 1.23 8.06 -52.49 -0.42 0.80 16 37 H 0.16 1.57 8.06 -52.49 -0.42 1.14 16 38 H 0.14 1.80 8.06 -52.49 -0.42 1.38 16 39 H 0.39 4.99 8.10 -40.82 -0.33 4.66 16 40 H 0.04 1.08 6.49 -51.93 -0.34 0.74 16 41 H 0.02 0.43 8.02 -51.93 -0.42 0.02 16 42 H 0.38 9.69 7.27 -40.82 -0.30 9.39 16 43 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16 44 H 0.08 1.10 8.10 -51.93 -0.42 0.68 16 45 H 0.08 1.22 7.97 -51.93 -0.41 0.81 16 46 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 47 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 48 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 49 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 50 H 0.07 1.06 7.84 -51.93 -0.41 0.65 16 51 H 0.07 1.19 6.62 -51.93 -0.34 0.85 16 LS Contribution 413.90 15.07 6.24 6.24 Total: -1.00 -35.13 413.90 -10.08 -45.21 By element: Atomic # 1 Polarization: 21.18 SS G_CDS: -8.36 Total: 12.82 kcal Atomic # 6 Polarization: 0.54 SS G_CDS: -2.28 Total: -1.74 kcal Atomic # 7 Polarization: -62.88 SS G_CDS: 0.06 Total: -62.82 kcal Atomic # 8 Polarization: -16.60 SS G_CDS: -0.72 Total: -17.32 kcal Atomic # 14 Polarization: 22.63 SS G_CDS: -5.02 Total: 17.61 kcal Total LS contribution 6.24 Total: 6.24 kcal Total: -35.13 -10.08 -45.21 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698633228.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.679 kcal (2) G-P(sol) polarization free energy of solvation -35.126 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.446 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.082 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.208 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.528 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds