Wall clock time and date at job start Wed Apr 1 2020 04:45:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09005 * 109.47177 * 2 1 4 4 O 1.42900 * 109.47548 * 120.00052 * 2 1 3 5 5 C 1.42902 * 114.00244 * 270.00360 * 4 2 1 6 6 C 1.50694 * 109.47138 * 179.97438 * 5 4 2 7 7 C 1.38648 * 120.79205 * 269.72118 * 6 5 4 8 8 C 1.38207 * 119.16293 * 179.80113 * 7 6 5 9 9 N 1.31862 * 120.76314 * 0.47932 * 8 7 6 10 10 C 1.31869 * 121.72676 * 359.74784 * 9 8 7 11 11 C 1.38202 * 120.76542 * 0.02562 * 10 9 8 12 12 C 1.50694 * 109.47129 * 240.00406 * 2 1 3 13 13 O 1.21286 * 120.00297 * 245.00091 * 12 2 1 14 14 N 1.34779 * 120.00275 * 64.99900 * 12 2 1 15 15 C 1.46494 * 120.00386 * 174.56223 * 14 12 2 16 16 C 1.53005 * 110.43455 * 302.95295 * 15 14 12 17 17 N 1.46496 * 109.46959 * 307.76511 * 16 15 14 18 18 C 1.36936 * 119.99991 * 174.95531 * 17 16 15 19 19 H 1.07998 * 120.00011 * 359.97438 * 18 17 16 20 20 C 1.38812 * 120.00042 * 179.97438 * 18 17 16 21 21 N 1.31612 * 120.00162 * 0.02562 * 20 18 17 22 22 Si 1.86807 * 119.99980 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.47081 * 90.00107 * 22 20 18 24 24 H 1.48495 * 109.46940 * 209.99887 * 22 20 18 25 25 H 1.48499 * 109.47144 * 330.00275 * 22 20 18 26 26 C 1.54895 * 110.48989 * 180.41125 * 15 14 12 27 27 C 1.55235 * 102.58523 * 279.18843 * 26 15 14 28 28 C 1.54268 * 104.23482 * 322.07962 * 27 26 15 29 29 C 1.53874 * 106.59500 * 23.61250 * 28 27 26 30 30 H 1.09005 * 109.47177 * 179.97438 * 1 2 3 31 31 H 1.09006 * 109.46914 * 299.99655 * 1 2 3 32 32 H 1.09001 * 109.47475 * 59.99497 * 1 2 3 33 33 H 1.09001 * 109.46776 * 299.99999 * 5 4 2 34 34 H 1.08998 * 109.47057 * 59.99267 * 5 4 2 35 35 H 1.07998 * 120.41847 * 359.97438 * 7 6 5 36 36 H 1.08000 * 119.61368 * 180.20100 * 8 7 6 37 37 H 1.07999 * 119.61862 * 179.97438 * 10 9 8 38 38 H 1.07999 * 120.41711 * 179.97438 * 11 10 9 39 39 H 0.97003 * 119.99530 * 354.55837 * 14 12 2 40 40 H 1.09006 * 109.46938 * 67.76433 * 16 15 14 41 41 H 1.08994 * 109.47070 * 187.76238 * 16 15 14 42 42 H 0.96998 * 120.00210 * 354.95007 * 17 16 15 43 43 H 0.97001 * 120.00351 * 180.02562 * 21 20 18 44 44 H 1.08998 * 110.75175 * 37.57901 * 26 15 14 45 45 H 1.08996 * 110.75253 * 160.94838 * 26 15 14 46 46 H 1.09000 * 110.46202 * 203.39297 * 27 26 15 47 47 H 1.08993 * 110.47483 * 80.77540 * 27 26 15 48 48 H 1.09002 * 110.03132 * 264.33386 * 28 27 26 49 49 H 1.08999 * 110.03294 * 142.89629 * 28 27 26 50 50 H 1.08997 * 110.03642 * 240.71495 * 29 28 27 51 51 H 1.09002 * 110.02887 * 119.28457 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0064 -0.6736 1.1667 5 6 2.2001 0.1829 2.2941 6 6 2.7004 -0.6285 3.4613 7 6 1.8131 -1.2040 4.3579 8 6 2.3086 -1.9449 5.4141 9 7 3.6078 -2.0990 5.5791 10 6 4.4807 -1.5623 4.7490 11 6 4.0591 -0.8123 3.6675 12 6 2.0323 -0.7103 -1.2305 13 8 2.6529 -1.7466 -1.1216 14 7 1.7918 -0.1940 -2.4520 15 6 2.3801 -0.8180 -3.6398 16 6 3.9038 -0.8757 -3.5136 17 7 4.4181 0.4578 -3.1921 18 6 5.7504 0.6326 -2.9285 19 1 6.4220 -0.2126 -2.9572 20 6 6.2378 1.8963 -2.6243 21 7 5.4193 2.9263 -2.5888 22 14 8.0552 2.1347 -2.2640 23 1 8.7754 2.4330 -3.5279 24 1 8.2279 3.2655 -1.3171 25 1 8.6069 0.8950 -1.6606 26 6 1.9709 -0.0442 -4.9177 27 6 0.5462 -0.5909 -5.2025 28 6 0.6356 -2.0884 -4.8426 29 6 1.8017 -2.2327 -3.8490 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8901 32 1 -0.3634 0.5139 -0.8899 33 1 2.9319 0.9513 2.0450 34 1 1.2538 0.6546 2.5588 35 1 0.7481 -1.0773 4.2309 36 1 1.6239 -2.3992 6.1150 37 1 5.5373 -1.7100 4.9167 38 1 4.7789 -0.3750 2.9914 39 1 1.2292 0.5907 -2.5447 40 1 4.1766 -1.5714 -2.7200 41 1 4.3339 -1.2134 -4.4565 42 1 3.8148 1.2170 -3.1660 43 1 5.7599 3.8095 -2.3767 44 1 1.9448 1.0288 -4.7277 45 1 2.6456 -0.2754 -5.7419 46 1 0.2936 -0.4661 -6.2555 47 1 -0.1877 -0.0901 -4.5713 48 1 0.8337 -2.6766 -5.7387 49 1 -0.2939 -2.4168 -4.3777 50 1 2.5656 -2.8910 -4.2628 51 1 1.4379 -2.6312 -2.9019 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001698633228.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:45:23 Heat of formation + Delta-G solvation = -61.615633 kcal Electronic energy + Delta-G solvation = -31537.734940 eV Core-core repulsion = 27436.216306 eV Total energy + Delta-G solvation = -4101.518634 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.51570 -41.12128 -39.50625 -38.14355 -36.20338 -34.71301 -34.26923 -33.14838 -32.18955 -31.86642 -29.76255 -29.47952 -27.91024 -26.38467 -25.19239 -24.45157 -23.98984 -23.01196 -21.90727 -21.31518 -20.33576 -19.15942 -18.63194 -18.07496 -17.51782 -17.42027 -17.06098 -16.57899 -16.51321 -16.31699 -15.97535 -15.72688 -15.42693 -15.24354 -15.07838 -14.80867 -14.58355 -14.40186 -14.24130 -14.05630 -13.77505 -13.60451 -13.30192 -13.20235 -12.98918 -12.83489 -12.54906 -12.51009 -12.39217 -12.24776 -12.19476 -12.04159 -11.91339 -11.76751 -11.63666 -11.27047 -11.09168 -10.91167 -10.78414 -10.52006 -10.32155 -10.13019 -9.88639 -8.96128 -7.96710 -5.22280 0.09374 0.15521 1.43165 1.43462 1.52300 1.71671 1.98959 2.53207 2.69865 3.07214 3.35665 3.50522 3.53821 3.65125 3.71143 3.72332 3.80226 3.93443 3.98626 4.07102 4.13309 4.16364 4.18197 4.34481 4.39305 4.41867 4.55488 4.60820 4.65346 4.69366 4.72187 4.81571 4.84053 4.84090 4.89904 4.93613 4.95146 5.08942 5.13998 5.17605 5.19355 5.31855 5.32338 5.35877 5.45356 5.53323 5.71097 5.75253 5.99970 6.26393 6.70349 6.94787 7.34147 7.41015 8.07242 8.38236 9.25928 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.007393 B = 0.003874 C = 0.002791 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3786.656186 B = 7226.228570 C =10031.501237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.070 3.930 3 H 0.092 0.908 4 O -0.378 6.378 5 C 0.096 3.904 6 C -0.057 4.057 7 C -0.149 4.149 8 C 0.088 3.912 9 N -0.505 5.505 10 C 0.086 3.914 11 C -0.168 4.168 12 C 0.516 3.484 13 O -0.564 6.564 14 N -0.695 5.695 15 C 0.173 3.827 16 C 0.147 3.853 17 N -0.726 5.726 18 C -0.245 4.245 19 H 0.058 0.942 20 C -0.062 4.062 21 N -0.959 5.959 22 Si 0.963 3.037 23 H -0.284 1.284 24 H -0.290 1.290 25 H -0.282 1.282 26 C -0.116 4.116 27 C -0.112 4.112 28 C -0.114 4.114 29 C -0.120 4.120 30 H 0.061 0.939 31 H 0.091 0.909 32 H 0.094 0.906 33 H 0.056 0.944 34 H 0.097 0.903 35 H 0.165 0.835 36 H 0.188 0.812 37 H 0.172 0.828 38 H 0.130 0.870 39 H 0.409 0.591 40 H 0.010 0.990 41 H 0.018 0.982 42 H 0.379 0.621 43 H 0.252 0.748 44 H 0.071 0.929 45 H 0.075 0.925 46 H 0.085 0.915 47 H 0.079 0.921 48 H 0.073 0.927 49 H 0.073 0.927 50 H 0.059 0.941 51 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.723 -4.266 6.081 19.217 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.009 3.991 3 H 0.110 0.890 4 O -0.297 6.297 5 C 0.020 3.980 6 C -0.065 4.065 7 C -0.168 4.168 8 C -0.068 4.068 9 N -0.215 5.215 10 C -0.070 4.070 11 C -0.188 4.188 12 C 0.303 3.697 13 O -0.442 6.442 14 N -0.348 5.348 15 C 0.086 3.914 16 C 0.019 3.981 17 N -0.369 5.369 18 C -0.377 4.377 19 H 0.076 0.924 20 C -0.255 4.255 21 N -0.610 5.610 22 Si 0.792 3.208 23 H -0.211 1.211 24 H -0.216 1.216 25 H -0.207 1.207 26 C -0.154 4.154 27 C -0.149 4.149 28 C -0.151 4.151 29 C -0.159 4.159 30 H 0.080 0.920 31 H 0.110 0.890 32 H 0.112 0.888 33 H 0.074 0.926 34 H 0.115 0.885 35 H 0.183 0.817 36 H 0.205 0.795 37 H 0.190 0.810 38 H 0.148 0.852 39 H 0.245 0.755 40 H 0.028 0.972 41 H 0.036 0.964 42 H 0.212 0.788 43 H 0.061 0.939 44 H 0.090 0.910 45 H 0.094 0.906 46 H 0.103 0.897 47 H 0.097 0.903 48 H 0.092 0.908 49 H 0.092 0.908 50 H 0.078 0.922 51 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -16.749 -5.750 6.889 19.002 hybrid contribution 1.142 1.494 -0.544 1.958 sum -15.608 -4.255 6.345 17.377 Atomic orbital electron populations 1.22195 0.90313 1.03721 1.05216 1.22057 0.97143 0.95994 0.83936 0.89009 1.88045 1.87212 1.34930 1.19478 1.21550 1.01469 0.91260 0.83684 1.20214 0.93849 0.97140 0.95306 1.22369 1.02082 0.97376 0.94990 1.23327 0.91839 0.95090 0.96590 1.67703 1.04415 1.20348 1.29071 1.23028 1.00644 0.92978 0.90303 1.22295 0.96687 1.00403 0.99435 1.20717 0.78836 0.84928 0.85240 1.90651 1.41190 1.25336 1.87042 1.45611 1.51790 1.32626 1.04740 1.21280 0.90715 0.93982 0.85375 1.21092 0.92855 0.87628 0.96541 1.42193 1.05784 1.04781 1.84104 1.19490 0.86532 0.93313 1.38399 0.92441 1.25313 1.01383 0.95415 1.03360 1.69750 1.34835 0.99085 1.57281 0.85308 0.81029 0.76919 0.77527 1.21130 1.21577 1.20718 1.22757 0.98214 0.99518 0.94879 1.22421 0.95081 0.94876 1.02560 1.22096 0.97297 0.97309 0.98418 1.22380 0.98543 0.95093 0.99906 0.91959 0.89044 0.88778 0.92577 0.88466 0.81728 0.79494 0.81049 0.85246 0.75453 0.97220 0.96431 0.78810 0.93918 0.91043 0.90599 0.89677 0.90252 0.90778 0.90828 0.92173 0.92594 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.79 9.47 71.98 0.68 -2.11 16 2 C 0.07 1.96 3.13 29.84 0.09 2.05 16 3 H 0.09 2.51 7.79 -2.38 -0.02 2.49 16 4 O -0.38 -12.09 9.51 -129.99 -1.24 -13.33 16 5 C 0.10 2.39 5.92 71.23 0.42 2.81 16 6 C -0.06 -1.45 5.55 -19.67 -0.11 -1.56 16 7 C -0.15 -3.01 9.82 22.36 0.22 -2.79 16 8 C 0.09 1.81 11.18 84.68 0.95 2.76 16 9 N -0.51 -12.96 10.36 -195.85 -2.03 -14.98 16 10 C 0.09 2.21 11.18 84.68 0.95 3.16 16 11 C -0.17 -4.63 9.82 22.36 0.22 -4.41 16 12 C 0.52 18.47 6.42 87.65 0.56 19.03 16 13 O -0.56 -25.77 13.47 15.94 0.21 -25.55 16 14 N -0.69 -21.17 4.51 -418.06 -1.88 -23.06 16 15 C 0.17 5.65 0.39 4.68 0.00 5.65 16 16 C 0.15 6.52 4.72 86.38 0.41 6.93 16 17 N -0.73 -37.47 5.30 -343.45 -1.82 -39.29 16 18 C -0.25 -14.30 9.99 84.03 0.84 -13.46 16 19 H 0.06 3.39 7.83 -2.91 -0.02 3.37 16 20 C -0.06 -3.57 5.50 84.86 0.47 -3.10 16 21 N -0.96 -56.85 13.06 21.65 0.28 -56.56 16 22 Si 0.96 47.09 29.55 68.60 2.03 49.12 16 23 H -0.28 -13.57 7.11 99.48 0.71 -12.86 16 24 H -0.29 -13.96 7.11 99.48 0.71 -13.25 16 25 H -0.28 -13.60 7.11 99.48 0.71 -12.89 16 26 C -0.12 -3.09 5.67 32.01 0.18 -2.91 16 27 C -0.11 -2.09 6.80 31.79 0.22 -1.87 16 28 C -0.11 -2.31 6.80 31.32 0.21 -2.10 16 29 C -0.12 -3.51 5.68 31.32 0.18 -3.33 16 30 H 0.06 1.22 8.14 -2.38 -0.02 1.20 16 31 H 0.09 1.19 7.87 -2.38 -0.02 1.17 16 32 H 0.09 1.25 7.76 -2.39 -0.02 1.23 16 33 H 0.06 1.49 8.05 -2.39 -0.02 1.47 16 34 H 0.10 1.66 7.83 -2.39 -0.02 1.65 16 35 H 0.17 2.23 8.06 -2.91 -0.02 2.20 16 36 H 0.19 2.44 8.06 -2.91 -0.02 2.42 16 37 H 0.17 3.58 8.06 -2.91 -0.02 3.56 16 38 H 0.13 3.68 8.06 -2.91 -0.02 3.65 16 39 H 0.41 9.80 8.10 -92.71 -0.75 9.05 16 40 H 0.01 0.51 6.49 -2.38 -0.02 0.49 16 41 H 0.02 0.80 8.02 -2.39 -0.02 0.78 16 42 H 0.38 19.66 7.27 -92.71 -0.67 18.98 16 43 H 0.25 14.45 8.31 -92.71 -0.77 13.68 16 44 H 0.07 1.98 8.10 -2.39 -0.02 1.96 16 45 H 0.08 2.15 7.97 -2.39 -0.02 2.13 16 46 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 47 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 48 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 49 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 50 H 0.06 1.84 7.84 -2.39 -0.02 1.83 16 51 H 0.06 1.84 6.62 -2.39 -0.02 1.82 16 Total: -1.00 -79.20 413.90 1.55 -77.65 By element: Atomic # 1 Polarization: 41.76 SS G_CDS: -0.49 Total: 41.27 kcal Atomic # 6 Polarization: -1.75 SS G_CDS: 6.49 Total: 4.74 kcal Atomic # 7 Polarization: -128.44 SS G_CDS: -5.45 Total: -133.90 kcal Atomic # 8 Polarization: -37.86 SS G_CDS: -1.02 Total: -38.88 kcal Atomic # 14 Polarization: 47.09 SS G_CDS: 2.03 Total: 49.12 kcal Total: -79.20 1.55 -77.65 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698633228.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.033 kcal (2) G-P(sol) polarization free energy of solvation -79.201 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.168 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.648 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.616 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds