Wall clock time and date at job start Wed Apr 1 2020 04:41:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08998 * 109.47166 * 2 1 4 4 O 1.42901 * 109.46881 * 120.00355 * 2 1 3 5 5 C 1.35913 * 116.99769 * 266.86391 * 4 2 1 6 6 C 1.39133 * 120.47401 * 5.33197 * 5 4 2 7 7 C 1.38539 * 118.37394 * 180.02562 * 6 5 4 8 8 C 1.38257 * 119.21864 * 359.97438 * 7 6 5 9 9 N 1.31839 * 120.88948 * 0.02562 * 8 7 6 10 10 C 1.31848 * 121.77856 * 359.69940 * 9 8 7 11 11 C 1.50705 * 109.47250 * 240.00134 * 2 1 3 12 12 O 1.21275 * 120.00201 * 248.16482 * 11 2 1 13 13 N 1.34780 * 119.99600 * 68.44057 * 11 2 1 14 14 C 1.46926 * 120.63194 * 3.66226 * 13 11 2 15 15 C 1.52760 * 109.00515 * 233.58040 * 14 13 11 16 16 C 1.53039 * 109.38705 * 305.59095 * 15 14 13 17 17 C 1.53038 * 109.53892 * 61.24202 * 16 15 14 18 18 H 1.08998 * 109.50164 * 58.58385 * 17 16 15 19 19 C 1.52996 * 109.49827 * 178.68599 * 17 16 15 20 20 C 1.53004 * 109.47084 * 294.83369 * 19 17 16 21 21 N 1.46497 * 109.47322 * 179.97438 * 20 19 17 22 22 C 1.36936 * 120.00134 * 179.97438 * 21 20 19 23 23 H 1.07996 * 119.99446 * 0.02562 * 22 21 20 24 24 C 1.38808 * 120.00059 * 180.02562 * 22 21 20 25 25 N 1.31618 * 120.00018 * 0.02562 * 24 22 21 26 26 Si 1.86793 * 120.00052 * 180.02562 * 24 22 21 27 27 H 1.48500 * 109.47128 * 89.99977 * 26 24 22 28 28 H 1.48500 * 109.47150 * 209.99819 * 26 24 22 29 29 H 1.48498 * 109.47229 * 330.00104 * 26 24 22 30 30 C 1.46927 * 120.62824 * 183.93946 * 13 11 2 31 31 H 1.09003 * 109.47532 * 185.59253 * 1 2 3 32 32 H 1.08999 * 109.47331 * 305.59628 * 1 2 3 33 33 H 1.09008 * 109.47258 * 65.59893 * 1 2 3 34 34 H 1.07996 * 120.81322 * 0.02562 * 6 5 4 35 35 H 1.08000 * 120.38768 * 179.97438 * 7 6 5 36 36 H 1.08001 * 119.55213 * 179.97438 * 8 7 6 37 37 H 1.07997 * 119.65537 * 180.29658 * 10 9 8 38 38 H 1.08997 * 109.58533 * 353.41670 * 14 13 11 39 39 H 1.08997 * 109.58558 * 113.84430 * 14 13 11 40 40 H 1.09000 * 109.56241 * 185.54670 * 15 14 13 41 41 H 1.09004 * 109.38080 * 65.51878 * 15 14 13 42 42 H 1.09000 * 109.45842 * 301.21976 * 16 15 14 43 43 H 1.09000 * 109.46012 * 181.26341 * 16 15 14 44 44 H 1.09001 * 109.46939 * 54.83478 * 19 17 16 45 45 H 1.09003 * 109.47137 * 174.83182 * 19 17 16 46 46 H 1.08997 * 109.46691 * 300.00213 * 20 19 17 47 47 H 1.09004 * 109.46559 * 59.99744 * 20 19 17 48 48 H 0.97000 * 119.99919 * 0.02562 * 21 20 19 49 49 H 0.97007 * 120.00195 * 180.02562 * 25 24 22 50 50 H 1.08993 * 109.58872 * 246.15662 * 30 13 11 51 51 H 1.09008 * 109.58486 * 6.44319 * 30 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0062 -0.6737 1.1668 5 6 2.2743 0.0936 2.2561 6 6 1.9820 1.4539 2.2502 7 6 2.2739 2.1949 3.3838 8 6 2.8410 1.5635 4.4753 9 7 3.1056 0.2723 4.4483 10 6 2.8384 -0.4693 3.3913 11 6 2.0323 -0.7104 -1.2305 12 8 2.6028 -1.7754 -1.1254 13 7 1.8525 -0.1593 -2.4473 14 6 1.2407 1.1694 -2.5843 15 6 0.0608 1.0766 -3.5501 16 6 0.5318 0.4619 -4.8701 17 6 1.0626 -0.9509 -4.6162 18 1 0.2770 -1.5598 -4.1689 19 6 1.5029 -1.5767 -5.9410 20 6 0.2840 -1.7632 -6.8469 21 7 0.7056 -2.3619 -8.1158 22 6 -0.2201 -2.6242 -9.0902 23 1 -1.2609 -2.3892 -8.9233 24 6 0.1793 -3.1920 -10.2922 25 7 1.4477 -3.4788 -10.4952 26 14 -1.0833 -3.5490 -11.6216 27 1 -1.2149 -2.3663 -12.5098 28 1 -0.6434 -4.7212 -12.4202 29 1 -2.3955 -3.8435 -10.9918 30 6 2.2591 -0.8786 -3.6622 31 1 -0.3634 -1.0228 0.1001 32 1 -0.3634 0.5982 0.8356 33 1 -0.3634 0.4246 -0.9359 34 1 1.5384 1.9206 1.3832 35 1 2.0609 3.2532 3.4145 36 1 3.0711 2.1361 5.3616 37 1 3.0650 -1.5251 3.4082 38 1 0.8887 1.5117 -1.6112 39 1 1.9762 1.8716 -2.9769 40 1 -0.3388 2.0737 -3.7351 41 1 -0.7158 0.4489 -3.1130 42 1 1.3252 1.0771 -5.2944 43 1 -0.3042 0.4157 -5.5679 44 1 2.2229 -0.9212 -6.4310 45 1 1.9649 -2.5453 -5.7495 46 1 -0.4359 -2.4186 -6.3569 47 1 -0.1779 -0.7946 -7.0383 48 1 1.6404 -2.5733 -8.2654 49 1 1.7269 -3.8752 -11.3354 50 1 3.0793 -0.3469 -4.1445 51 1 2.5812 -1.8864 -3.3997 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001698697361.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:41:43 Heat of formation + Delta-G solvation = -25.660636 kcal Electronic energy + Delta-G solvation = -30187.279976 eV Core-core repulsion = 26087.320467 eV Total energy + Delta-G solvation = -4099.959509 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.43891 -40.47552 -38.79952 -37.69573 -35.53225 -33.85706 -32.72827 -32.52238 -32.15616 -30.82880 -30.35667 -27.66353 -26.29452 -25.03703 -24.27168 -23.92392 -23.02432 -22.44727 -21.47399 -20.18887 -19.35640 -19.08155 -17.62006 -17.24711 -17.03224 -16.76889 -16.18750 -16.07124 -15.27904 -15.00486 -14.98760 -14.86421 -14.54310 -14.32681 -14.23425 -13.96834 -13.74768 -13.49315 -13.31969 -13.12329 -13.06358 -13.01771 -12.68406 -12.57170 -12.19471 -12.07007 -11.71267 -11.52005 -11.31370 -11.09073 -11.01809 -10.79538 -10.62789 -10.53373 -10.32924 -10.23553 -10.07701 -10.05112 -9.92256 -9.68778 -8.92788 -8.89665 -8.83306 -6.90920 -5.75988 -3.04638 0.65123 0.74268 2.07189 2.20746 2.95772 3.32511 3.43318 3.48252 3.50325 3.84870 3.99103 4.05952 4.22923 4.28842 4.33203 4.38317 4.58511 4.60455 4.62562 4.68371 4.72115 4.84861 4.95850 5.01958 5.03229 5.07422 5.25409 5.30614 5.45062 5.49804 5.51553 5.54173 5.55031 5.59199 5.65425 5.68664 5.83532 5.88583 5.92760 6.04536 6.11823 6.18772 6.29371 6.39604 6.43000 6.68581 6.84993 6.89682 7.02751 7.50190 7.69710 7.80312 8.43109 9.53929 10.12937 10.47152 11.46967 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.032561 B = 0.001660 C = 0.001625 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 859.706400 B =16859.470248 C =17228.748836 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.065 3.935 3 H 0.098 0.902 4 O -0.276 6.276 5 C 0.083 3.917 6 C -0.172 4.172 7 C -0.129 4.129 8 C 0.055 3.945 9 N -0.446 5.446 10 C 0.078 3.922 11 C 0.516 3.484 12 O -0.514 6.514 13 N -0.605 5.605 14 C 0.098 3.902 15 C -0.137 4.137 16 C -0.118 4.118 17 C -0.095 4.095 18 H 0.074 0.926 19 C -0.120 4.120 20 C 0.155 3.845 21 N -0.734 5.734 22 C -0.240 4.240 23 H 0.070 0.930 24 C -0.015 4.015 25 N -0.933 5.933 26 Si 0.907 3.093 27 H -0.290 1.290 28 H -0.291 1.291 29 H -0.282 1.282 30 C 0.117 3.883 31 H 0.080 0.920 32 H 0.074 0.926 33 H 0.087 0.913 34 H 0.140 0.860 35 H 0.139 0.861 36 H 0.159 0.841 37 H 0.166 0.834 38 H 0.081 0.919 39 H 0.075 0.925 40 H 0.077 0.923 41 H 0.068 0.932 42 H 0.066 0.934 43 H 0.078 0.922 44 H 0.064 0.936 45 H 0.065 0.935 46 H 0.016 0.984 47 H 0.020 0.980 48 H 0.383 0.617 49 H 0.255 0.745 50 H 0.071 0.929 51 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.179 16.991 28.627 33.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.005 3.995 3 H 0.116 0.884 4 O -0.187 6.187 5 C 0.035 3.965 6 C -0.198 4.198 7 C -0.149 4.149 8 C -0.102 4.102 9 N -0.155 5.155 10 C -0.081 4.081 11 C 0.302 3.698 12 O -0.388 6.388 13 N -0.340 5.340 14 C -0.025 4.025 15 C -0.175 4.175 16 C -0.156 4.156 17 C -0.115 4.115 18 H 0.093 0.907 19 C -0.158 4.158 20 C 0.027 3.973 21 N -0.378 5.378 22 C -0.371 4.371 23 H 0.088 0.912 24 C -0.211 4.211 25 N -0.582 5.582 26 Si 0.738 3.262 27 H -0.217 1.217 28 H -0.217 1.217 29 H -0.208 1.208 30 C -0.004 4.004 31 H 0.099 0.901 32 H 0.093 0.907 33 H 0.106 0.894 34 H 0.158 0.842 35 H 0.157 0.843 36 H 0.176 0.824 37 H 0.183 0.817 38 H 0.099 0.901 39 H 0.093 0.907 40 H 0.096 0.904 41 H 0.087 0.913 42 H 0.084 0.916 43 H 0.096 0.904 44 H 0.083 0.917 45 H 0.084 0.916 46 H 0.034 0.966 47 H 0.038 0.962 48 H 0.217 0.783 49 H 0.065 0.935 50 H 0.090 0.910 51 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 0.377 15.777 29.304 33.283 hybrid contribution -0.887 0.489 -1.763 2.033 sum -0.510 16.266 27.541 31.990 Atomic orbital electron populations 1.22410 0.91923 1.05082 1.04128 1.22308 0.96218 0.96954 0.84067 0.88431 1.86271 1.79883 1.34002 1.18531 1.20288 0.96311 0.90711 0.89156 1.21743 1.04188 0.93316 1.00557 1.22013 0.98322 1.01299 0.93259 1.22714 0.97951 0.90837 0.98652 1.67768 1.14865 1.07128 1.25734 1.22302 0.97859 1.01072 0.86859 1.20046 0.79896 0.85930 0.83913 1.90760 1.40688 1.21723 1.85646 1.48025 1.61485 1.18827 1.05635 1.21882 0.96089 0.83920 1.00603 1.21894 0.97213 1.01958 0.96417 1.21657 1.01884 0.95608 0.96429 1.21457 0.97332 0.96872 0.95807 0.90722 1.21704 0.99544 1.00760 0.93833 1.20658 0.93875 0.95739 0.87002 1.42376 1.08340 1.74480 1.12646 1.19231 0.90177 1.33734 0.93963 0.91247 1.24746 0.96189 1.01919 0.98216 1.69663 1.14096 1.49085 1.25370 0.86186 0.80462 0.77511 0.82015 1.21738 1.21744 1.20788 1.21801 0.96903 0.98445 0.83280 0.90121 0.90724 0.89395 0.84197 0.84331 0.82398 0.81674 0.90053 0.90714 0.90401 0.91325 0.91557 0.90385 0.91699 0.91630 0.96649 0.96240 0.78320 0.93523 0.91028 0.88740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.09 9.04 37.15 0.34 -0.76 16 2 C 0.06 0.53 1.77 -27.88 -0.05 0.48 16 3 H 0.10 0.55 5.00 -51.93 -0.26 0.29 16 4 O -0.28 -2.93 9.33 -39.24 -0.37 -3.29 16 5 C 0.08 0.75 6.70 -39.08 -0.26 0.49 16 6 C -0.17 -1.11 8.91 -39.14 -0.35 -1.46 16 7 C -0.13 -0.71 10.11 -39.46 -0.40 -1.11 16 8 C 0.06 0.38 11.18 -17.54 -0.20 0.18 16 9 N -0.45 -4.22 10.36 -13.13 -0.14 -4.36 16 10 C 0.08 0.74 11.14 -17.37 -0.19 0.54 16 11 C 0.52 5.99 7.06 -10.98 -0.08 5.91 16 12 O -0.51 -8.33 15.95 -14.21 -0.23 -8.56 16 13 N -0.60 -5.90 2.98 -173.03 -0.52 -6.41 16 14 C 0.10 0.61 5.45 -3.93 -0.02 0.59 16 15 C -0.14 -0.94 5.90 -26.83 -0.16 -1.10 16 16 C -0.12 -1.18 4.96 -26.69 -0.13 -1.31 16 17 C -0.09 -1.13 2.34 -90.50 -0.21 -1.34 16 18 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 19 C -0.12 -1.85 4.80 -26.73 -0.13 -1.98 16 20 C 0.15 3.05 6.02 -4.04 -0.02 3.02 16 21 N -0.73 -18.78 5.60 -59.91 -0.34 -19.12 16 22 C -0.24 -6.79 9.99 -15.06 -0.15 -6.94 16 23 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 24 C -0.01 -0.43 5.50 -17.43 -0.10 -0.53 16 25 N -0.93 -28.49 13.06 55.49 0.72 -27.76 16 26 Si 0.91 22.51 29.55 -169.99 -5.02 17.48 16 27 H -0.29 -7.13 7.11 56.52 0.40 -6.72 16 28 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 29 H -0.28 -6.81 7.11 56.52 0.40 -6.40 16 30 C 0.12 1.34 5.71 -3.71 -0.02 1.31 16 31 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.07 0.34 7.93 -51.93 -0.41 -0.07 16 33 H 0.09 0.43 5.21 -51.92 -0.27 0.16 16 34 H 0.14 0.56 5.94 -52.49 -0.31 0.25 16 35 H 0.14 0.35 8.06 -52.49 -0.42 -0.07 16 36 H 0.16 0.65 8.06 -52.49 -0.42 0.23 16 37 H 0.17 1.40 8.06 -52.49 -0.42 0.97 16 38 H 0.08 0.32 4.54 -51.93 -0.24 0.08 16 39 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 40 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 41 H 0.07 0.49 7.57 -51.93 -0.39 0.10 16 42 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 43 H 0.08 0.88 6.51 -51.93 -0.34 0.54 16 44 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 45 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 46 H 0.02 0.32 8.14 -51.93 -0.42 -0.11 16 47 H 0.02 0.38 6.54 -51.93 -0.34 0.04 16 48 H 0.38 10.31 7.67 -40.82 -0.31 9.99 16 49 H 0.25 7.51 8.31 -40.82 -0.34 7.17 16 50 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 51 H 0.09 1.27 7.03 -51.92 -0.36 0.90 16 LS Contribution 402.25 15.07 6.06 6.06 Total: -1.00 -35.67 402.25 -9.81 -45.48 By element: Atomic # 1 Polarization: 12.32 SS G_CDS: -7.86 Total: 4.46 kcal Atomic # 6 Polarization: -1.84 SS G_CDS: -2.13 Total: -3.98 kcal Atomic # 7 Polarization: -57.39 SS G_CDS: -0.26 Total: -57.65 kcal Atomic # 8 Polarization: -11.26 SS G_CDS: -0.59 Total: -11.85 kcal Atomic # 14 Polarization: 22.51 SS G_CDS: -5.02 Total: 17.48 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -35.67 -9.81 -45.48 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698697361.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.819 kcal (2) G-P(sol) polarization free energy of solvation -35.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.809 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.480 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.661 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds