Wall clock time and date at job start Wed Apr 1 2020 04:41:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08998 * 109.47166 * 2 1 4 4 O 1.42901 * 109.46881 * 120.00355 * 2 1 3 5 5 C 1.35913 * 116.99769 * 266.86391 * 4 2 1 6 6 C 1.39133 * 120.47401 * 5.33197 * 5 4 2 7 7 C 1.38539 * 118.37394 * 180.02562 * 6 5 4 8 8 C 1.38257 * 119.21864 * 359.97438 * 7 6 5 9 9 N 1.31839 * 120.88948 * 0.02562 * 8 7 6 10 10 C 1.31848 * 121.77856 * 359.69940 * 9 8 7 11 11 C 1.50705 * 109.47250 * 240.00134 * 2 1 3 12 12 O 1.21275 * 120.00201 * 248.16482 * 11 2 1 13 13 N 1.34780 * 119.99600 * 68.44057 * 11 2 1 14 14 C 1.46926 * 120.63194 * 3.66226 * 13 11 2 15 15 C 1.52760 * 109.00515 * 233.58040 * 14 13 11 16 16 C 1.53039 * 109.38705 * 305.59095 * 15 14 13 17 17 C 1.53038 * 109.53892 * 61.24202 * 16 15 14 18 18 H 1.08998 * 109.50164 * 58.58385 * 17 16 15 19 19 C 1.52996 * 109.49827 * 178.68599 * 17 16 15 20 20 C 1.53004 * 109.47084 * 294.83369 * 19 17 16 21 21 N 1.46497 * 109.47322 * 179.97438 * 20 19 17 22 22 C 1.36936 * 120.00134 * 179.97438 * 21 20 19 23 23 H 1.07996 * 119.99446 * 0.02562 * 22 21 20 24 24 C 1.38808 * 120.00059 * 180.02562 * 22 21 20 25 25 N 1.31618 * 120.00018 * 0.02562 * 24 22 21 26 26 Si 1.86793 * 120.00052 * 180.02562 * 24 22 21 27 27 H 1.48500 * 109.47128 * 89.99977 * 26 24 22 28 28 H 1.48500 * 109.47150 * 209.99819 * 26 24 22 29 29 H 1.48498 * 109.47229 * 330.00104 * 26 24 22 30 30 C 1.46927 * 120.62824 * 183.93946 * 13 11 2 31 31 H 1.09003 * 109.47532 * 185.59253 * 1 2 3 32 32 H 1.08999 * 109.47331 * 305.59628 * 1 2 3 33 33 H 1.09008 * 109.47258 * 65.59893 * 1 2 3 34 34 H 1.07996 * 120.81322 * 0.02562 * 6 5 4 35 35 H 1.08000 * 120.38768 * 179.97438 * 7 6 5 36 36 H 1.08001 * 119.55213 * 179.97438 * 8 7 6 37 37 H 1.07997 * 119.65537 * 180.29658 * 10 9 8 38 38 H 1.08997 * 109.58533 * 353.41670 * 14 13 11 39 39 H 1.08997 * 109.58558 * 113.84430 * 14 13 11 40 40 H 1.09000 * 109.56241 * 185.54670 * 15 14 13 41 41 H 1.09004 * 109.38080 * 65.51878 * 15 14 13 42 42 H 1.09000 * 109.45842 * 301.21976 * 16 15 14 43 43 H 1.09000 * 109.46012 * 181.26341 * 16 15 14 44 44 H 1.09001 * 109.46939 * 54.83478 * 19 17 16 45 45 H 1.09003 * 109.47137 * 174.83182 * 19 17 16 46 46 H 1.08997 * 109.46691 * 300.00213 * 20 19 17 47 47 H 1.09004 * 109.46559 * 59.99744 * 20 19 17 48 48 H 0.97000 * 119.99919 * 0.02562 * 21 20 19 49 49 H 0.97007 * 120.00195 * 180.02562 * 25 24 22 50 50 H 1.08993 * 109.58872 * 246.15662 * 30 13 11 51 51 H 1.09008 * 109.58486 * 6.44319 * 30 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0062 -0.6737 1.1668 5 6 2.2743 0.0936 2.2561 6 6 1.9820 1.4539 2.2502 7 6 2.2739 2.1949 3.3838 8 6 2.8410 1.5635 4.4753 9 7 3.1056 0.2723 4.4483 10 6 2.8384 -0.4693 3.3913 11 6 2.0323 -0.7104 -1.2305 12 8 2.6028 -1.7754 -1.1254 13 7 1.8525 -0.1593 -2.4473 14 6 1.2407 1.1694 -2.5843 15 6 0.0608 1.0766 -3.5501 16 6 0.5318 0.4619 -4.8701 17 6 1.0626 -0.9509 -4.6162 18 1 0.2770 -1.5598 -4.1689 19 6 1.5029 -1.5767 -5.9410 20 6 0.2840 -1.7632 -6.8469 21 7 0.7056 -2.3619 -8.1158 22 6 -0.2201 -2.6242 -9.0902 23 1 -1.2609 -2.3892 -8.9233 24 6 0.1793 -3.1920 -10.2922 25 7 1.4477 -3.4788 -10.4952 26 14 -1.0833 -3.5490 -11.6216 27 1 -1.2149 -2.3663 -12.5098 28 1 -0.6434 -4.7212 -12.4202 29 1 -2.3955 -3.8435 -10.9918 30 6 2.2591 -0.8786 -3.6622 31 1 -0.3634 -1.0228 0.1001 32 1 -0.3634 0.5982 0.8356 33 1 -0.3634 0.4246 -0.9359 34 1 1.5384 1.9206 1.3832 35 1 2.0609 3.2532 3.4145 36 1 3.0711 2.1361 5.3616 37 1 3.0650 -1.5251 3.4082 38 1 0.8887 1.5117 -1.6112 39 1 1.9762 1.8716 -2.9769 40 1 -0.3388 2.0737 -3.7351 41 1 -0.7158 0.4489 -3.1130 42 1 1.3252 1.0771 -5.2944 43 1 -0.3042 0.4157 -5.5679 44 1 2.2229 -0.9212 -6.4310 45 1 1.9649 -2.5453 -5.7495 46 1 -0.4359 -2.4186 -6.3569 47 1 -0.1779 -0.7946 -7.0383 48 1 1.6404 -2.5733 -8.2654 49 1 1.7269 -3.8752 -11.3354 50 1 3.0793 -0.3469 -4.1445 51 1 2.5812 -1.8864 -3.3997 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001698697361.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:41:42 Heat of formation + Delta-G solvation = -48.758711 kcal Electronic energy + Delta-G solvation = -30188.281583 eV Core-core repulsion = 26087.320467 eV Total energy + Delta-G solvation = -4100.961116 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -42.10299 -41.18424 -39.51426 -38.61771 -37.00162 -35.25411 -33.53696 -33.19668 -33.06449 -32.27602 -31.00448 -29.10953 -27.03992 -25.97510 -25.49331 -24.60551 -23.90892 -23.37975 -22.73082 -21.27800 -20.10499 -19.66830 -19.13847 -18.28082 -17.82447 -17.48103 -16.92781 -16.79387 -16.63387 -16.06636 -16.00986 -15.71196 -15.45521 -15.26361 -15.19482 -14.90058 -14.79354 -14.56958 -14.44757 -14.19713 -13.97429 -13.73886 -13.36818 -13.30728 -13.06012 -12.98214 -12.86592 -12.68225 -12.43731 -12.42950 -12.30608 -12.11321 -11.95477 -11.83606 -11.68411 -11.55565 -11.27412 -10.93156 -10.89071 -10.70473 -10.58042 -9.74276 -9.48591 -9.00977 -7.96613 -5.26039 0.13771 0.22622 1.35250 1.40046 1.46344 1.48592 1.57097 2.29067 2.55237 2.79028 3.19304 3.37013 3.46913 3.56038 3.67780 3.73741 3.74371 3.78407 3.87143 3.89910 4.04370 4.10986 4.14671 4.29625 4.33983 4.37262 4.48674 4.52895 4.54563 4.61846 4.65231 4.75441 4.76741 4.81417 4.85171 4.87193 4.97614 5.02258 5.07430 5.11901 5.15293 5.24958 5.34010 5.39446 5.44846 5.46996 5.48829 5.53882 6.10370 6.25802 6.28593 6.96096 6.97553 7.31479 8.08355 8.30883 9.27084 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.032561 B = 0.001660 C = 0.001625 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 859.706400 B =16859.470248 C =17228.748836 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.068 3.932 3 H 0.133 0.867 4 O -0.307 6.307 5 C 0.066 3.934 6 C -0.166 4.166 7 C -0.118 4.118 8 C 0.046 3.954 9 N -0.475 5.475 10 C 0.049 3.951 11 C 0.508 3.492 12 O -0.575 6.575 13 N -0.599 5.599 14 C 0.091 3.909 15 C -0.130 4.130 16 C -0.118 4.118 17 C -0.082 4.082 18 H 0.064 0.936 19 C -0.109 4.109 20 C 0.155 3.845 21 N -0.750 5.750 22 C -0.248 4.248 23 H 0.076 0.924 24 C -0.077 4.077 25 N -0.970 5.970 26 Si 0.976 3.024 27 H -0.284 1.284 28 H -0.296 1.296 29 H -0.269 1.269 30 C 0.121 3.879 31 H 0.057 0.943 32 H 0.098 0.902 33 H 0.106 0.894 34 H 0.172 0.828 35 H 0.178 0.822 36 H 0.183 0.817 37 H 0.155 0.845 38 H 0.115 0.885 39 H 0.093 0.907 40 H 0.107 0.893 41 H 0.068 0.932 42 H 0.071 0.929 43 H 0.064 0.936 44 H 0.066 0.934 45 H 0.049 0.951 46 H 0.010 0.990 47 H 0.032 0.968 48 H 0.372 0.628 49 H 0.251 0.749 50 H 0.081 0.919 51 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.053 21.061 29.600 36.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.009 3.991 3 H 0.150 0.850 4 O -0.219 6.219 5 C 0.019 3.981 6 C -0.192 4.192 7 C -0.137 4.137 8 C -0.111 4.111 9 N -0.185 5.185 10 C -0.108 4.108 11 C 0.295 3.705 12 O -0.454 6.454 13 N -0.332 5.332 14 C -0.030 4.030 15 C -0.168 4.168 16 C -0.156 4.156 17 C -0.102 4.102 18 H 0.082 0.918 19 C -0.147 4.147 20 C 0.028 3.972 21 N -0.392 5.392 22 C -0.380 4.380 23 H 0.094 0.906 24 C -0.269 4.269 25 N -0.621 5.621 26 Si 0.805 3.195 27 H -0.211 1.211 28 H -0.222 1.222 29 H -0.194 1.194 30 C -0.002 4.002 31 H 0.076 0.924 32 H 0.117 0.883 33 H 0.124 0.876 34 H 0.189 0.811 35 H 0.196 0.804 36 H 0.200 0.800 37 H 0.172 0.828 38 H 0.133 0.867 39 H 0.111 0.889 40 H 0.125 0.875 41 H 0.087 0.913 42 H 0.090 0.910 43 H 0.083 0.917 44 H 0.085 0.915 45 H 0.068 0.932 46 H 0.028 0.972 47 H 0.050 0.950 48 H 0.204 0.796 49 H 0.060 0.940 50 H 0.099 0.901 51 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -1.544 19.896 30.302 36.282 hybrid contribution -0.295 -0.714 -1.995 2.139 sum -1.839 19.182 28.307 34.244 Atomic orbital electron populations 1.22432 0.90079 1.04416 1.06087 1.22450 0.97343 0.97549 0.81785 0.85024 1.86238 1.80526 1.35603 1.19493 1.20362 0.97285 0.91957 0.88510 1.22116 1.03209 0.91970 1.01946 1.22439 0.96341 1.02969 0.91970 1.23292 0.97392 0.90155 1.00266 1.67740 1.16012 1.08679 1.26063 1.22258 0.99525 1.01126 0.87907 1.20819 0.78948 0.85380 0.85316 1.90731 1.43549 1.24524 1.86605 1.48106 1.60812 1.19841 1.04456 1.22248 0.96209 0.82009 1.02506 1.21880 0.97332 1.03201 0.94410 1.21645 1.01481 0.94107 0.98318 1.21293 0.97178 0.98127 0.93622 0.91751 1.21565 0.97706 1.00451 0.94990 1.20824 0.95512 0.95410 0.85413 1.42640 1.07536 1.74881 1.14185 1.19664 0.90928 1.32808 0.94621 0.90582 1.25619 0.98158 1.02488 1.00683 1.69828 1.16079 1.50430 1.25780 0.85102 0.78412 0.77039 0.78979 1.21053 1.22218 1.19428 1.21575 0.96876 0.97622 0.84123 0.92384 0.88276 0.87583 0.81080 0.80429 0.79968 0.82805 0.86694 0.88927 0.87469 0.91350 0.90985 0.91698 0.91505 0.93222 0.97180 0.95012 0.79607 0.93986 0.90068 0.91644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.63 9.04 71.98 0.65 -0.98 16 2 C 0.07 0.99 1.77 29.85 0.05 1.04 16 3 H 0.13 0.92 5.00 -2.39 -0.01 0.90 16 4 O -0.31 -6.51 9.33 -73.66 -0.69 -7.19 16 5 C 0.07 1.15 6.70 22.60 0.15 1.30 16 6 C -0.17 -1.57 8.91 22.56 0.20 -1.37 16 7 C -0.12 -0.84 10.11 22.35 0.23 -0.61 16 8 C 0.05 0.54 11.18 84.70 0.95 1.48 16 9 N -0.48 -8.98 10.36 -195.44 -2.02 -11.01 16 10 C 0.05 0.98 11.14 84.80 0.94 1.93 16 11 C 0.51 11.60 7.06 87.66 0.62 12.22 16 12 O -0.58 -19.80 15.95 15.89 0.25 -19.55 16 13 N -0.60 -10.78 2.98 -819.73 -2.44 -13.22 16 14 C 0.09 0.77 5.45 86.22 0.47 1.24 16 15 C -0.13 -1.28 5.90 30.53 0.18 -1.10 16 16 C -0.12 -2.09 4.96 30.62 0.15 -1.94 16 17 C -0.08 -1.93 2.34 -10.72 -0.03 -1.96 16 18 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 19 C -0.11 -3.42 4.80 30.59 0.15 -3.27 16 20 C 0.15 6.13 6.02 86.38 0.52 6.65 16 21 N -0.75 -39.05 5.60 -343.46 -1.92 -40.98 16 22 C -0.25 -14.14 9.99 84.03 0.84 -13.30 16 23 H 0.08 4.13 7.83 -2.91 -0.02 4.10 16 24 C -0.08 -4.51 5.50 84.86 0.47 -4.04 16 25 N -0.97 -60.35 13.06 21.65 0.28 -60.07 16 26 Si 0.98 46.43 29.55 68.60 2.03 48.46 16 27 H -0.28 -13.11 7.11 99.48 0.71 -12.40 16 28 H -0.30 -14.16 7.11 99.48 0.71 -13.46 16 29 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 30 C 0.12 2.76 5.71 86.36 0.49 3.25 16 31 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 32 H 0.10 0.48 7.93 -2.39 -0.02 0.46 16 33 H 0.11 0.58 5.21 -2.38 -0.01 0.57 16 34 H 0.17 0.41 5.94 -2.91 -0.02 0.39 16 35 H 0.18 -0.13 8.06 -2.91 -0.02 -0.16 16 36 H 0.18 1.01 8.06 -2.91 -0.02 0.99 16 37 H 0.15 3.07 8.06 -2.91 -0.02 3.05 16 38 H 0.12 0.23 4.54 -2.39 -0.01 0.22 16 39 H 0.09 0.56 8.14 -2.39 -0.02 0.54 16 40 H 0.11 0.55 8.14 -2.39 -0.02 0.53 16 41 H 0.07 0.72 7.57 -2.38 -0.02 0.70 16 42 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 43 H 0.06 1.34 6.51 -2.39 -0.02 1.32 16 44 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 45 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 46 H 0.01 0.42 8.14 -2.39 -0.02 0.40 16 47 H 0.03 1.21 6.54 -2.38 -0.02 1.19 16 48 H 0.37 20.67 7.67 -92.71 -0.71 19.95 16 49 H 0.25 15.11 8.31 -92.70 -0.77 14.34 16 50 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 51 H 0.06 1.89 7.03 -2.38 -0.02 1.88 16 Total: -1.00 -82.62 402.25 2.76 -79.87 By element: Atomic # 1 Polarization: 22.93 SS G_CDS: 0.23 Total: 23.17 kcal Atomic # 6 Polarization: -6.51 SS G_CDS: 7.03 Total: 0.53 kcal Atomic # 7 Polarization: -119.17 SS G_CDS: -6.11 Total: -125.28 kcal Atomic # 8 Polarization: -26.31 SS G_CDS: -0.43 Total: -26.74 kcal Atomic # 14 Polarization: 46.43 SS G_CDS: 2.03 Total: 48.46 kcal Total: -82.62 2.76 -79.87 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698697361.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.109 kcal (2) G-P(sol) polarization free energy of solvation -82.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.514 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.868 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.759 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds