Wall clock time and date at job start Wed Apr 1 2020 04:41:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 109.47180 * 2 1 4 4 O 1.42899 * 109.47057 * 239.99390 * 2 1 3 5 5 C 1.35919 * 116.99497 * 85.04438 * 4 2 1 6 6 C 1.39140 * 120.47393 * 354.56250 * 5 4 2 7 7 C 1.38529 * 118.37097 * 180.02562 * 6 5 4 8 8 C 1.38258 * 119.22313 * 359.97348 * 7 6 5 9 9 N 1.31848 * 120.88717 * 0.02743 * 8 7 6 10 10 C 1.31835 * 121.77798 * 0.02562 * 9 8 7 11 11 C 1.50697 * 109.46718 * 119.99904 * 2 1 3 12 12 O 1.21279 * 120.00157 * 106.91521 * 11 2 1 13 13 N 1.34781 * 120.00039 * 286.90957 * 11 2 1 14 14 C 1.46926 * 120.62967 * 4.89525 * 13 11 2 15 15 C 1.53189 * 108.77030 * 233.58099 * 14 13 11 16 16 C 1.53039 * 109.31702 * 305.36318 * 15 14 13 17 17 C 1.53040 * 109.53805 * 61.36523 * 16 15 14 18 18 H 1.08997 * 109.49543 * 58.58597 * 17 16 15 19 19 C 1.53000 * 109.50102 * 178.65430 * 17 16 15 20 20 C 1.52998 * 109.46979 * 295.00510 * 19 17 16 21 21 N 1.46501 * 109.47076 * 180.02562 * 20 19 17 22 22 C 1.36937 * 119.99736 * 179.97438 * 21 20 19 23 23 H 1.08001 * 120.00149 * 0.02562 * 22 21 20 24 24 C 1.38815 * 119.99939 * 179.97438 * 22 21 20 25 25 N 1.31619 * 120.00070 * 179.97438 * 24 22 21 26 26 Si 1.86804 * 119.99567 * 0.02562 * 24 22 21 27 27 H 1.48495 * 109.47188 * 89.99924 * 26 24 22 28 28 H 1.48507 * 109.46806 * 209.99492 * 26 24 22 29 29 H 1.48495 * 109.47379 * 329.99480 * 26 24 22 30 30 C 1.46927 * 120.62733 * 184.60809 * 13 11 2 31 31 H 1.08999 * 109.47328 * 304.76341 * 1 2 3 32 32 H 1.09005 * 109.46778 * 64.75640 * 1 2 3 33 33 H 1.08996 * 109.47485 * 184.75819 * 1 2 3 34 34 H 1.07998 * 120.81194 * 0.04087 * 6 5 4 35 35 H 1.08010 * 120.39006 * 180.02562 * 7 6 5 36 36 H 1.08006 * 119.55310 * 180.02562 * 8 7 6 37 37 H 1.07999 * 119.65612 * 180.02562 * 10 9 8 38 38 H 1.09000 * 109.58461 * 353.36170 * 14 13 11 39 39 H 1.08997 * 109.58956 * 113.79650 * 14 13 11 40 40 H 1.09002 * 109.49681 * 65.31669 * 15 14 13 41 41 H 1.09000 * 109.49922 * 185.40995 * 15 14 13 42 42 H 1.08995 * 109.46654 * 181.38698 * 16 15 14 43 43 H 1.08998 * 109.45840 * 301.34644 * 16 15 14 44 44 H 1.09001 * 109.46771 * 54.99633 * 19 17 16 45 45 H 1.09001 * 109.47374 * 175.00014 * 19 17 16 46 46 H 1.09009 * 109.46583 * 299.99544 * 20 19 17 47 47 H 1.09001 * 109.47472 * 59.99565 * 20 19 17 48 48 H 0.96996 * 120.00171 * 359.97438 * 21 20 19 49 49 H 0.97003 * 119.99363 * 179.97438 * 25 24 22 50 50 H 1.09004 * 109.58211 * 246.20147 * 30 13 11 51 51 H 1.08999 * 109.59026 * 6.62719 * 30 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0063 -0.6738 -1.1667 5 6 2.1133 0.0628 -2.3040 6 6 1.6634 1.3790 -2.3372 7 6 1.7934 2.0894 -3.5194 8 6 2.3617 1.4727 -4.6185 9 7 2.7780 0.2233 -4.5536 10 6 2.6716 -0.4874 -3.4484 11 6 2.0322 -0.7104 1.2305 12 8 2.5224 -1.8156 1.1350 13 7 1.9367 -0.1175 2.4371 14 6 1.2501 1.1730 2.5848 15 6 2.1937 2.1562 3.2845 16 6 2.6742 1.5455 4.6029 17 6 3.4461 0.2550 4.3179 18 1 4.2919 0.4735 3.6662 19 6 3.9548 -0.3370 5.6338 20 6 4.9756 0.6149 6.2604 21 7 5.4632 0.0477 7.5201 22 6 6.3911 0.7273 8.2632 23 1 6.7632 1.6816 7.9208 24 6 6.8528 0.1902 9.4571 25 7 7.7450 0.8432 10.1710 26 14 6.2085 -1.4602 10.0495 27 1 7.0677 -2.5474 9.5158 28 1 6.2300 -1.4959 11.5340 29 1 4.8159 -1.6491 9.5699 30 6 2.5118 -0.7525 3.6307 31 1 -0.3634 0.5859 0.8442 32 1 -0.3633 0.4383 -0.9296 33 1 -0.3634 -1.0241 0.0852 34 1 1.2240 1.8357 -1.4628 35 1 1.4554 3.1134 -3.5815 36 1 2.4660 2.0217 -5.5428 37 1 3.0244 -1.5080 -3.4333 38 1 0.9835 1.5597 1.6012 39 1 0.3495 1.0413 3.1845 40 1 3.0514 2.3568 2.6425 41 1 1.6643 3.0874 3.4866 42 1 3.3264 2.2531 5.1147 43 1 1.8143 1.3223 5.2345 44 1 3.1176 -0.4737 6.3183 45 1 4.4270 -1.3002 5.4404 46 1 5.8128 0.7516 5.5758 47 1 4.5033 1.5780 6.4539 48 1 5.1287 -0.8092 7.8278 49 1 8.0673 0.4679 11.0055 50 1 1.7119 -1.0380 4.3140 51 1 3.0778 -1.6367 3.3375 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001698697362.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:41:47 Heat of formation + Delta-G solvation = -22.904188 kcal Electronic energy + Delta-G solvation = -30284.725467 eV Core-core repulsion = 26184.885487 eV Total energy + Delta-G solvation = -4099.839980 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.46031 -40.49451 -38.83480 -37.75349 -35.67292 -33.95009 -32.75626 -32.49077 -32.18907 -31.06584 -30.47392 -28.03427 -26.37822 -25.02386 -24.31642 -23.91940 -23.04546 -22.32499 -21.35577 -20.27252 -19.54137 -19.06199 -17.65035 -17.47952 -17.28906 -16.80543 -16.31667 -16.02687 -15.44628 -14.97686 -14.93536 -14.80939 -14.54860 -14.43341 -14.23098 -14.06221 -13.82112 -13.64135 -13.45046 -13.26007 -13.07614 -12.83293 -12.81845 -12.64693 -12.33455 -12.08344 -11.81621 -11.68683 -11.48005 -11.22305 -11.14725 -10.84665 -10.70885 -10.58282 -10.36164 -10.32081 -10.11829 -10.06076 -9.97578 -9.59713 -8.98028 -8.91190 -8.86932 -7.22735 -5.77161 -3.12523 0.65146 0.74041 1.97857 2.19345 2.93280 3.32441 3.37345 3.40559 3.45238 3.79700 3.99294 4.06567 4.21779 4.24008 4.29328 4.35991 4.56174 4.59091 4.59728 4.61892 4.71362 4.72529 4.88687 4.94727 4.97778 4.98848 5.23569 5.25018 5.35969 5.43293 5.43948 5.49567 5.52679 5.54905 5.57023 5.58620 5.74822 5.77952 5.86917 5.92799 5.96494 6.09365 6.16095 6.18590 6.32917 6.66612 6.72975 6.77321 6.96664 7.50170 7.74486 7.99230 8.42028 9.21405 9.93945 10.13847 11.41269 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.019968 B = 0.001824 C = 0.001816 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1401.889393 B =15345.065732 C =15416.735557 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.066 3.934 3 H 0.097 0.903 4 O -0.277 6.277 5 C 0.082 3.918 6 C -0.170 4.170 7 C -0.130 4.130 8 C 0.056 3.944 9 N -0.446 5.446 10 C 0.078 3.922 11 C 0.520 3.480 12 O -0.514 6.514 13 N -0.605 5.605 14 C 0.099 3.901 15 C -0.137 4.137 16 C -0.119 4.119 17 C -0.095 4.095 18 H 0.076 0.924 19 C -0.124 4.124 20 C 0.158 3.842 21 N -0.758 5.758 22 C -0.244 4.244 23 H 0.089 0.911 24 C 0.003 3.997 25 N -0.935 5.935 26 Si 0.886 3.114 27 H -0.284 1.284 28 H -0.291 1.291 29 H -0.277 1.277 30 C 0.118 3.882 31 H 0.085 0.915 32 H 0.076 0.924 33 H 0.078 0.922 34 H 0.140 0.860 35 H 0.139 0.861 36 H 0.159 0.841 37 H 0.166 0.834 38 H 0.081 0.919 39 H 0.076 0.924 40 H 0.068 0.932 41 H 0.078 0.922 42 H 0.079 0.921 43 H 0.066 0.934 44 H 0.064 0.936 45 H 0.065 0.935 46 H 0.025 0.975 47 H 0.028 0.972 48 H 0.360 0.640 49 H 0.259 0.741 50 H 0.072 0.928 51 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.796 4.260 -27.465 34.712 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.006 3.994 3 H 0.115 0.885 4 O -0.188 6.188 5 C 0.034 3.966 6 C -0.196 4.196 7 C -0.149 4.149 8 C -0.101 4.101 9 N -0.155 5.155 10 C -0.080 4.080 11 C 0.306 3.694 12 O -0.388 6.388 13 N -0.340 5.340 14 C -0.023 4.023 15 C -0.175 4.175 16 C -0.157 4.157 17 C -0.115 4.115 18 H 0.095 0.905 19 C -0.163 4.163 20 C 0.031 3.969 21 N -0.403 5.403 22 C -0.374 4.374 23 H 0.107 0.893 24 C -0.193 4.193 25 N -0.583 5.583 26 Si 0.716 3.284 27 H -0.210 1.210 28 H -0.217 1.217 29 H -0.204 1.204 30 C -0.004 4.004 31 H 0.103 0.897 32 H 0.095 0.905 33 H 0.097 0.903 34 H 0.158 0.842 35 H 0.157 0.843 36 H 0.176 0.824 37 H 0.183 0.817 38 H 0.099 0.901 39 H 0.095 0.905 40 H 0.086 0.914 41 H 0.096 0.904 42 H 0.097 0.903 43 H 0.084 0.916 44 H 0.083 0.917 45 H 0.083 0.917 46 H 0.043 0.957 47 H 0.046 0.954 48 H 0.193 0.807 49 H 0.069 0.931 50 H 0.090 0.910 51 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -19.954 3.237 -28.147 34.654 hybrid contribution -0.857 -0.349 1.465 1.733 sum -20.811 2.887 -26.682 33.961 Atomic orbital electron populations 1.22442 0.92304 1.04950 1.04087 1.22258 0.96028 0.96917 0.84187 0.88522 1.86255 1.80715 1.36428 1.15418 1.20269 0.96778 0.91256 0.88271 1.21769 1.03657 0.94022 1.00189 1.22021 0.98810 1.01161 0.92954 1.22725 0.97127 0.91286 0.98916 1.67770 1.14741 1.07489 1.25485 1.22298 0.98569 1.01067 0.86115 1.19931 0.79426 0.86304 0.83760 1.90761 1.43572 1.19006 1.85439 1.48007 1.56674 1.22057 1.07276 1.21990 0.95737 0.83198 1.01411 1.21961 0.99594 0.98070 0.97864 1.21667 1.00479 0.97175 0.96346 1.21531 0.97758 0.94962 0.97243 0.90530 1.21755 0.99614 0.99861 0.95037 1.20645 0.93891 0.94740 0.87602 1.42728 1.51138 1.23426 1.23030 1.19063 1.14252 1.03123 1.00991 0.89291 1.24690 0.98948 0.98319 0.97342 1.69708 1.33627 1.39057 1.15870 0.86522 0.78630 0.85212 0.78009 1.21050 1.21726 1.20354 1.21882 0.97042 0.96573 0.84897 0.89682 0.90533 0.90298 0.84205 0.84308 0.82378 0.81699 0.90089 0.90545 0.91360 0.90370 0.90268 0.91551 0.91732 0.91654 0.95750 0.95402 0.80704 0.93074 0.91015 0.88751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.96 8.80 37.16 0.33 -0.63 16 2 C 0.07 0.53 1.79 -27.88 -0.05 0.48 16 3 H 0.10 0.56 5.41 -51.93 -0.28 0.28 16 4 O -0.28 -2.89 9.38 -39.05 -0.37 -3.25 16 5 C 0.08 0.73 6.60 -39.07 -0.26 0.47 16 6 C -0.17 -1.09 8.32 -39.14 -0.33 -1.42 16 7 C -0.13 -0.72 10.11 -39.47 -0.40 -1.12 16 8 C 0.06 0.39 11.18 -17.54 -0.20 0.19 16 9 N -0.45 -4.23 10.36 -13.12 -0.14 -4.37 16 10 C 0.08 0.74 11.14 -17.38 -0.19 0.54 16 11 C 0.52 5.79 7.03 -10.98 -0.08 5.71 16 12 O -0.51 -8.04 15.98 -14.01 -0.22 -8.27 16 13 N -0.61 -5.58 2.97 -172.50 -0.51 -6.09 16 14 C 0.10 0.58 5.37 -3.71 -0.02 0.56 16 15 C -0.14 -0.92 6.08 -26.61 -0.16 -1.08 16 16 C -0.12 -1.13 4.95 -26.69 -0.13 -1.26 16 17 C -0.10 -1.07 2.35 -90.27 -0.21 -1.28 16 18 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 19 C -0.12 -1.77 4.80 -26.73 -0.13 -1.90 16 20 C 0.16 2.97 6.02 -4.04 -0.02 2.94 16 21 N -0.76 -18.13 5.41 -59.90 -0.32 -18.46 16 22 C -0.24 -7.00 10.47 -15.06 -0.16 -7.16 16 23 H 0.09 2.72 8.06 -52.49 -0.42 2.29 16 24 C 0.00 0.08 5.50 -17.43 -0.10 -0.02 16 25 N -0.93 -29.57 13.97 55.49 0.78 -28.79 16 26 Si 0.89 22.29 27.74 -169.99 -4.71 17.57 16 27 H -0.28 -7.12 7.11 56.52 0.40 -6.71 16 28 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 29 H -0.28 -6.53 6.52 56.52 0.37 -6.16 16 30 C 0.12 1.25 5.73 -3.48 -0.02 1.23 16 31 H 0.08 0.28 5.98 -51.93 -0.31 -0.03 16 32 H 0.08 0.32 7.01 -51.93 -0.36 -0.04 16 33 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.14 0.56 5.66 -52.49 -0.30 0.26 16 35 H 0.14 0.37 8.06 -52.48 -0.42 -0.06 16 36 H 0.16 0.67 8.06 -52.48 -0.42 0.25 16 37 H 0.17 1.39 8.06 -52.49 -0.42 0.97 16 38 H 0.08 0.28 4.60 -51.93 -0.24 0.05 16 39 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 40 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 42 H 0.08 0.86 6.50 -51.93 -0.34 0.53 16 43 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 44 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 45 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 46 H 0.02 0.48 8.14 -51.92 -0.42 0.05 16 47 H 0.03 0.52 6.54 -51.93 -0.34 0.18 16 48 H 0.36 8.40 5.53 -40.82 -0.23 8.18 16 49 H 0.26 7.80 8.31 -40.82 -0.34 7.46 16 50 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 51 H 0.09 1.19 7.03 -51.93 -0.37 0.82 16 LS Contribution 399.00 15.07 6.01 6.01 Total: -1.00 -36.51 399.00 -9.46 -45.97 By element: Atomic # 1 Polarization: 11.26 SS G_CDS: -7.85 Total: 3.41 kcal Atomic # 6 Polarization: -1.61 SS G_CDS: -2.12 Total: -3.74 kcal Atomic # 7 Polarization: -57.51 SS G_CDS: -0.20 Total: -57.71 kcal Atomic # 8 Polarization: -10.93 SS G_CDS: -0.59 Total: -11.52 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -4.71 Total: 17.57 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -36.51 -9.46 -45.97 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698697362.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.069 kcal (2) G-P(sol) polarization free energy of solvation -36.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.460 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.973 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds