Wall clock time and date at job start Wed Apr 1 2020 04:41:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 109.47180 * 2 1 4 4 O 1.42899 * 109.47057 * 239.99390 * 2 1 3 5 5 C 1.35919 * 116.99497 * 85.04438 * 4 2 1 6 6 C 1.39140 * 120.47393 * 354.56250 * 5 4 2 7 7 C 1.38529 * 118.37097 * 180.02562 * 6 5 4 8 8 C 1.38258 * 119.22313 * 359.97348 * 7 6 5 9 9 N 1.31848 * 120.88717 * 0.02743 * 8 7 6 10 10 C 1.31835 * 121.77798 * 0.02562 * 9 8 7 11 11 C 1.50697 * 109.46718 * 119.99904 * 2 1 3 12 12 O 1.21279 * 120.00157 * 106.91521 * 11 2 1 13 13 N 1.34781 * 120.00039 * 286.90957 * 11 2 1 14 14 C 1.46926 * 120.62967 * 4.89525 * 13 11 2 15 15 C 1.53189 * 108.77030 * 233.58099 * 14 13 11 16 16 C 1.53039 * 109.31702 * 305.36318 * 15 14 13 17 17 C 1.53040 * 109.53805 * 61.36523 * 16 15 14 18 18 H 1.08997 * 109.49543 * 58.58597 * 17 16 15 19 19 C 1.53000 * 109.50102 * 178.65430 * 17 16 15 20 20 C 1.52998 * 109.46979 * 295.00510 * 19 17 16 21 21 N 1.46501 * 109.47076 * 180.02562 * 20 19 17 22 22 C 1.36937 * 119.99736 * 179.97438 * 21 20 19 23 23 H 1.08001 * 120.00149 * 0.02562 * 22 21 20 24 24 C 1.38815 * 119.99939 * 179.97438 * 22 21 20 25 25 N 1.31619 * 120.00070 * 179.97438 * 24 22 21 26 26 Si 1.86804 * 119.99567 * 0.02562 * 24 22 21 27 27 H 1.48495 * 109.47188 * 89.99924 * 26 24 22 28 28 H 1.48507 * 109.46806 * 209.99492 * 26 24 22 29 29 H 1.48495 * 109.47379 * 329.99480 * 26 24 22 30 30 C 1.46927 * 120.62733 * 184.60809 * 13 11 2 31 31 H 1.08999 * 109.47328 * 304.76341 * 1 2 3 32 32 H 1.09005 * 109.46778 * 64.75640 * 1 2 3 33 33 H 1.08996 * 109.47485 * 184.75819 * 1 2 3 34 34 H 1.07998 * 120.81194 * 0.04087 * 6 5 4 35 35 H 1.08010 * 120.39006 * 180.02562 * 7 6 5 36 36 H 1.08006 * 119.55310 * 180.02562 * 8 7 6 37 37 H 1.07999 * 119.65612 * 180.02562 * 10 9 8 38 38 H 1.09000 * 109.58461 * 353.36170 * 14 13 11 39 39 H 1.08997 * 109.58956 * 113.79650 * 14 13 11 40 40 H 1.09002 * 109.49681 * 65.31669 * 15 14 13 41 41 H 1.09000 * 109.49922 * 185.40995 * 15 14 13 42 42 H 1.08995 * 109.46654 * 181.38698 * 16 15 14 43 43 H 1.08998 * 109.45840 * 301.34644 * 16 15 14 44 44 H 1.09001 * 109.46771 * 54.99633 * 19 17 16 45 45 H 1.09001 * 109.47374 * 175.00014 * 19 17 16 46 46 H 1.09009 * 109.46583 * 299.99544 * 20 19 17 47 47 H 1.09001 * 109.47472 * 59.99565 * 20 19 17 48 48 H 0.96996 * 120.00171 * 359.97438 * 21 20 19 49 49 H 0.97003 * 119.99363 * 179.97438 * 25 24 22 50 50 H 1.09004 * 109.58211 * 246.20147 * 30 13 11 51 51 H 1.08999 * 109.59026 * 6.62719 * 30 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0063 -0.6738 -1.1667 5 6 2.1133 0.0628 -2.3040 6 6 1.6634 1.3790 -2.3372 7 6 1.7934 2.0894 -3.5194 8 6 2.3617 1.4727 -4.6185 9 7 2.7780 0.2233 -4.5536 10 6 2.6716 -0.4874 -3.4484 11 6 2.0322 -0.7104 1.2305 12 8 2.5224 -1.8156 1.1350 13 7 1.9367 -0.1175 2.4371 14 6 1.2501 1.1730 2.5848 15 6 2.1937 2.1562 3.2845 16 6 2.6742 1.5455 4.6029 17 6 3.4461 0.2550 4.3179 18 1 4.2919 0.4735 3.6662 19 6 3.9548 -0.3370 5.6338 20 6 4.9756 0.6149 6.2604 21 7 5.4632 0.0477 7.5201 22 6 6.3911 0.7273 8.2632 23 1 6.7632 1.6816 7.9208 24 6 6.8528 0.1902 9.4571 25 7 7.7450 0.8432 10.1710 26 14 6.2085 -1.4602 10.0495 27 1 7.0677 -2.5474 9.5158 28 1 6.2300 -1.4959 11.5340 29 1 4.8159 -1.6491 9.5699 30 6 2.5118 -0.7525 3.6307 31 1 -0.3634 0.5859 0.8442 32 1 -0.3633 0.4383 -0.9296 33 1 -0.3634 -1.0241 0.0852 34 1 1.2240 1.8357 -1.4628 35 1 1.4554 3.1134 -3.5815 36 1 2.4660 2.0217 -5.5428 37 1 3.0244 -1.5080 -3.4333 38 1 0.9835 1.5597 1.6012 39 1 0.3495 1.0413 3.1845 40 1 3.0514 2.3568 2.6425 41 1 1.6643 3.0874 3.4866 42 1 3.3264 2.2531 5.1147 43 1 1.8143 1.3223 5.2345 44 1 3.1176 -0.4737 6.3183 45 1 4.4270 -1.3002 5.4404 46 1 5.8128 0.7516 5.5758 47 1 4.5033 1.5780 6.4539 48 1 5.1287 -0.8092 7.8278 49 1 8.0673 0.4679 11.0055 50 1 1.7119 -1.0380 4.3140 51 1 3.0778 -1.6367 3.3375 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001698697362.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:41:46 Heat of formation + Delta-G solvation = -47.222062 kcal Electronic energy + Delta-G solvation = -30285.779969 eV Core-core repulsion = 26184.885487 eV Total energy + Delta-G solvation = -4100.894482 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -42.09614 -41.17635 -39.52282 -38.63529 -37.12403 -35.26027 -33.68009 -33.22141 -32.99789 -32.53446 -31.05913 -29.38852 -27.05490 -25.86818 -25.40661 -24.61788 -23.80506 -23.36782 -22.73275 -21.26624 -20.25567 -19.63865 -19.59843 -18.25654 -17.85975 -17.46668 -16.98103 -16.76562 -16.63538 -16.22594 -15.97532 -15.78516 -15.39447 -15.25831 -15.11440 -14.89447 -14.80392 -14.64521 -14.40783 -14.29123 -13.94872 -13.89688 -13.66985 -13.32673 -13.21058 -13.01572 -12.95963 -12.67289 -12.49138 -12.35702 -12.29217 -12.12738 -11.98162 -11.83930 -11.67654 -11.58203 -11.28873 -10.97423 -10.90610 -10.71266 -10.58483 -9.74285 -9.49121 -9.30993 -8.05154 -5.38928 0.13356 0.22424 1.27295 1.36344 1.40379 1.46073 1.47630 2.30617 2.46659 2.78741 3.18285 3.26194 3.48549 3.52880 3.56953 3.72922 3.73846 3.75818 3.85200 3.89051 3.95133 4.05605 4.13304 4.29426 4.30783 4.36872 4.42746 4.50502 4.54766 4.60319 4.62595 4.73480 4.75989 4.80905 4.83129 4.86756 4.98493 5.00482 5.06417 5.10159 5.13544 5.22223 5.30365 5.38495 5.43091 5.47382 5.51700 5.73137 6.09743 6.19071 6.27682 6.95684 6.96913 7.05740 7.82289 8.01376 9.16257 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.019968 B = 0.001824 C = 0.001816 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1401.889393 B =15345.065732 C =15416.735557 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.068 3.932 3 H 0.125 0.875 4 O -0.308 6.308 5 C 0.067 3.933 6 C -0.165 4.165 7 C -0.119 4.119 8 C 0.046 3.954 9 N -0.475 5.475 10 C 0.050 3.950 11 C 0.512 3.488 12 O -0.573 6.573 13 N -0.600 5.600 14 C 0.093 3.907 15 C -0.132 4.132 16 C -0.120 4.120 17 C -0.085 4.085 18 H 0.061 0.939 19 C -0.113 4.113 20 C 0.155 3.845 21 N -0.761 5.761 22 C -0.238 4.238 23 H 0.055 0.945 24 C -0.066 4.066 25 N -0.983 5.983 26 Si 0.958 3.042 27 H -0.281 1.281 28 H -0.293 1.293 29 H -0.249 1.249 30 C 0.121 3.879 31 H 0.113 0.887 32 H 0.092 0.908 33 H 0.059 0.941 34 H 0.171 0.829 35 H 0.177 0.823 36 H 0.183 0.817 37 H 0.155 0.845 38 H 0.113 0.887 39 H 0.099 0.901 40 H 0.061 0.939 41 H 0.105 0.895 42 H 0.061 0.939 43 H 0.077 0.923 44 H 0.076 0.924 45 H 0.059 0.941 46 H 0.013 0.987 47 H 0.034 0.966 48 H 0.366 0.634 49 H 0.258 0.742 50 H 0.087 0.913 51 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.366 5.863 -28.388 37.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.008 3.992 3 H 0.142 0.858 4 O -0.220 6.220 5 C 0.020 3.980 6 C -0.191 4.191 7 C -0.139 4.139 8 C -0.111 4.111 9 N -0.185 5.185 10 C -0.108 4.108 11 C 0.300 3.700 12 O -0.452 6.452 13 N -0.333 5.333 14 C -0.027 4.027 15 C -0.169 4.169 16 C -0.157 4.157 17 C -0.105 4.105 18 H 0.079 0.921 19 C -0.151 4.151 20 C 0.030 3.970 21 N -0.407 5.407 22 C -0.369 4.369 23 H 0.073 0.927 24 C -0.257 4.257 25 N -0.634 5.634 26 Si 0.785 3.215 27 H -0.207 1.207 28 H -0.220 1.220 29 H -0.173 1.173 30 C -0.001 4.001 31 H 0.132 0.868 32 H 0.111 0.889 33 H 0.078 0.922 34 H 0.188 0.812 35 H 0.195 0.805 36 H 0.200 0.800 37 H 0.172 0.828 38 H 0.131 0.869 39 H 0.117 0.883 40 H 0.079 0.921 41 H 0.123 0.877 42 H 0.080 0.920 43 H 0.095 0.905 44 H 0.094 0.906 45 H 0.077 0.923 46 H 0.031 0.969 47 H 0.052 0.948 48 H 0.199 0.801 49 H 0.067 0.933 50 H 0.105 0.895 51 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -23.576 4.868 -29.103 37.769 hybrid contribution 0.305 -0.700 1.679 1.844 sum -23.271 4.168 -27.424 36.208 Atomic orbital electron populations 1.22466 0.89957 1.04578 1.06154 1.22427 0.97611 0.97172 0.81975 0.85761 1.86215 1.81440 1.37961 1.16411 1.20328 0.97726 0.92437 0.87557 1.22136 1.02599 0.92724 1.01634 1.22440 0.97081 1.02547 0.91790 1.23286 0.96553 0.90621 1.00636 1.67739 1.15979 1.08992 1.25775 1.22262 1.00180 1.01254 0.87093 1.20640 0.78491 0.85824 0.85092 1.90731 1.46379 1.21740 1.86367 1.48094 1.55960 1.23007 1.06231 1.22348 0.95731 0.81034 1.03629 1.21944 0.99857 0.99157 0.95989 1.21662 1.00216 0.95586 0.98245 1.21389 0.97720 0.96152 0.95246 0.92086 1.21631 0.98561 0.98468 0.96481 1.20821 0.94591 0.96075 0.85559 1.42771 1.50373 1.23454 1.24133 1.19053 1.14522 1.02073 1.01283 0.92695 1.25567 0.99649 1.02787 0.97745 1.69892 1.35604 1.41349 1.16515 0.85366 0.79403 0.79732 0.77035 1.20692 1.21972 1.17306 1.21697 0.97171 0.95505 0.85769 0.86844 0.88910 0.92155 0.81166 0.80514 0.80029 0.82764 0.86928 0.88330 0.92052 0.87705 0.92010 0.90466 0.90565 0.92261 0.96914 0.94796 0.80095 0.93284 0.89459 0.91413 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.27 8.80 71.98 0.63 -0.64 16 2 C 0.07 0.93 1.79 29.85 0.05 0.98 16 3 H 0.13 0.94 5.41 -2.39 -0.01 0.92 16 4 O -0.31 -6.40 9.38 -73.94 -0.69 -7.10 16 5 C 0.07 1.15 6.60 22.60 0.15 1.30 16 6 C -0.16 -1.59 8.32 22.56 0.19 -1.40 16 7 C -0.12 -0.90 10.11 22.34 0.23 -0.67 16 8 C 0.05 0.55 11.18 84.70 0.95 1.50 16 9 N -0.48 -9.07 10.36 -195.44 -2.02 -11.10 16 10 C 0.05 0.99 11.14 84.80 0.94 1.93 16 11 C 0.51 11.00 7.03 87.66 0.62 11.62 16 12 O -0.57 -18.77 15.98 15.68 0.25 -18.51 16 13 N -0.60 -9.82 2.97 -818.06 -2.43 -12.25 16 14 C 0.09 0.67 5.37 86.36 0.46 1.14 16 15 C -0.13 -1.27 6.08 30.67 0.19 -1.09 16 16 C -0.12 -1.98 4.95 30.62 0.15 -1.83 16 17 C -0.09 -1.83 2.35 -10.57 -0.02 -1.85 16 18 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 19 C -0.11 -3.11 4.80 30.59 0.15 -2.96 16 20 C 0.16 5.80 6.02 86.38 0.52 6.32 16 21 N -0.76 -36.13 5.41 -343.44 -1.86 -37.99 16 22 C -0.24 -13.89 10.47 84.03 0.88 -13.01 16 23 H 0.06 3.50 8.06 -2.91 -0.02 3.48 16 24 C -0.07 -3.95 5.50 84.86 0.47 -3.49 16 25 N -0.98 -63.73 13.97 21.65 0.30 -63.43 16 26 Si 0.96 45.92 27.74 68.60 1.90 47.82 16 27 H -0.28 -13.25 7.11 99.48 0.71 -12.54 16 28 H -0.29 -14.11 7.11 99.48 0.71 -13.40 16 29 H -0.25 -10.63 6.52 99.48 0.65 -9.98 16 30 C 0.12 2.44 5.73 86.51 0.50 2.94 16 31 H 0.11 0.15 5.98 -2.39 -0.01 0.13 16 32 H 0.09 0.41 7.01 -2.38 -0.02 0.39 16 33 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 34 H 0.17 0.47 5.66 -2.91 -0.02 0.45 16 35 H 0.18 -0.03 8.06 -2.91 -0.02 -0.06 16 36 H 0.18 1.10 8.06 -2.91 -0.02 1.08 16 37 H 0.16 3.06 8.06 -2.91 -0.02 3.04 16 38 H 0.11 0.13 4.60 -2.39 -0.01 0.12 16 39 H 0.10 0.39 8.14 -2.39 -0.02 0.38 16 40 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 41 H 0.10 0.55 8.14 -2.39 -0.02 0.53 16 42 H 0.06 1.25 6.50 -2.39 -0.02 1.23 16 43 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 44 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 45 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 46 H 0.01 0.51 8.14 -2.38 -0.02 0.49 16 47 H 0.03 1.25 6.54 -2.39 -0.02 1.23 16 48 H 0.37 16.45 5.53 -92.71 -0.51 15.94 16 49 H 0.26 15.90 8.31 -92.71 -0.77 15.13 16 50 H 0.09 1.50 8.14 -2.38 -0.02 1.48 16 51 H 0.07 1.76 7.03 -2.39 -0.02 1.74 16 Total: -1.00 -85.27 399.00 2.87 -82.40 By element: Atomic # 1 Polarization: 18.98 SS G_CDS: 0.37 Total: 19.35 kcal Atomic # 6 Polarization: -6.25 SS G_CDS: 7.04 Total: 0.80 kcal Atomic # 7 Polarization: -118.76 SS G_CDS: -6.00 Total: -124.76 kcal Atomic # 8 Polarization: -25.17 SS G_CDS: -0.44 Total: -25.61 kcal Atomic # 14 Polarization: 45.92 SS G_CDS: 1.90 Total: 47.82 kcal Total: -85.27 2.87 -82.40 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698697362.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.178 kcal (2) G-P(sol) polarization free energy of solvation -85.271 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.400 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds