Wall clock time and date at job start Wed Apr 1 2020 04:41:46
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53001 * 1
3 3 H 1.08997 * 109.47180 * 2 1
4 4 O 1.42899 * 109.47057 * 239.99390 * 2 1 3
5 5 C 1.35919 * 116.99497 * 85.04438 * 4 2 1
6 6 C 1.39140 * 120.47393 * 354.56250 * 5 4 2
7 7 C 1.38529 * 118.37097 * 180.02562 * 6 5 4
8 8 C 1.38258 * 119.22313 * 359.97348 * 7 6 5
9 9 N 1.31848 * 120.88717 * 0.02743 * 8 7 6
10 10 C 1.31835 * 121.77798 * 0.02562 * 9 8 7
11 11 C 1.50697 * 109.46718 * 119.99904 * 2 1 3
12 12 O 1.21279 * 120.00157 * 106.91521 * 11 2 1
13 13 N 1.34781 * 120.00039 * 286.90957 * 11 2 1
14 14 C 1.46926 * 120.62967 * 4.89525 * 13 11 2
15 15 C 1.53189 * 108.77030 * 233.58099 * 14 13 11
16 16 C 1.53039 * 109.31702 * 305.36318 * 15 14 13
17 17 C 1.53040 * 109.53805 * 61.36523 * 16 15 14
18 18 H 1.08997 * 109.49543 * 58.58597 * 17 16 15
19 19 C 1.53000 * 109.50102 * 178.65430 * 17 16 15
20 20 C 1.52998 * 109.46979 * 295.00510 * 19 17 16
21 21 N 1.46501 * 109.47076 * 180.02562 * 20 19 17
22 22 C 1.36937 * 119.99736 * 179.97438 * 21 20 19
23 23 H 1.08001 * 120.00149 * 0.02562 * 22 21 20
24 24 C 1.38815 * 119.99939 * 179.97438 * 22 21 20
25 25 N 1.31619 * 120.00070 * 179.97438 * 24 22 21
26 26 Si 1.86804 * 119.99567 * 0.02562 * 24 22 21
27 27 H 1.48495 * 109.47188 * 89.99924 * 26 24 22
28 28 H 1.48507 * 109.46806 * 209.99492 * 26 24 22
29 29 H 1.48495 * 109.47379 * 329.99480 * 26 24 22
30 30 C 1.46927 * 120.62733 * 184.60809 * 13 11 2
31 31 H 1.08999 * 109.47328 * 304.76341 * 1 2 3
32 32 H 1.09005 * 109.46778 * 64.75640 * 1 2 3
33 33 H 1.08996 * 109.47485 * 184.75819 * 1 2 3
34 34 H 1.07998 * 120.81194 * 0.04087 * 6 5 4
35 35 H 1.08010 * 120.39006 * 180.02562 * 7 6 5
36 36 H 1.08006 * 119.55310 * 180.02562 * 8 7 6
37 37 H 1.07999 * 119.65612 * 180.02562 * 10 9 8
38 38 H 1.09000 * 109.58461 * 353.36170 * 14 13 11
39 39 H 1.08997 * 109.58956 * 113.79650 * 14 13 11
40 40 H 1.09002 * 109.49681 * 65.31669 * 15 14 13
41 41 H 1.09000 * 109.49922 * 185.40995 * 15 14 13
42 42 H 1.08995 * 109.46654 * 181.38698 * 16 15 14
43 43 H 1.08998 * 109.45840 * 301.34644 * 16 15 14
44 44 H 1.09001 * 109.46771 * 54.99633 * 19 17 16
45 45 H 1.09001 * 109.47374 * 175.00014 * 19 17 16
46 46 H 1.09009 * 109.46583 * 299.99544 * 20 19 17
47 47 H 1.09001 * 109.47472 * 59.99565 * 20 19 17
48 48 H 0.96996 * 120.00171 * 359.97438 * 21 20 19
49 49 H 0.97003 * 119.99363 * 179.97438 * 25 24 22
50 50 H 1.09004 * 109.58211 * 246.20147 * 30 13 11
51 51 H 1.08999 * 109.59026 * 6.62719 * 30 13 11
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8933 1.0276 0.0000
4 8 2.0063 -0.6738 -1.1667
5 6 2.1133 0.0628 -2.3040
6 6 1.6634 1.3790 -2.3372
7 6 1.7934 2.0894 -3.5194
8 6 2.3617 1.4727 -4.6185
9 7 2.7780 0.2233 -4.5536
10 6 2.6716 -0.4874 -3.4484
11 6 2.0322 -0.7104 1.2305
12 8 2.5224 -1.8156 1.1350
13 7 1.9367 -0.1175 2.4371
14 6 1.2501 1.1730 2.5848
15 6 2.1937 2.1562 3.2845
16 6 2.6742 1.5455 4.6029
17 6 3.4461 0.2550 4.3179
18 1 4.2919 0.4735 3.6662
19 6 3.9548 -0.3370 5.6338
20 6 4.9756 0.6149 6.2604
21 7 5.4632 0.0477 7.5201
22 6 6.3911 0.7273 8.2632
23 1 6.7632 1.6816 7.9208
24 6 6.8528 0.1902 9.4571
25 7 7.7450 0.8432 10.1710
26 14 6.2085 -1.4602 10.0495
27 1 7.0677 -2.5474 9.5158
28 1 6.2300 -1.4959 11.5340
29 1 4.8159 -1.6491 9.5699
30 6 2.5118 -0.7525 3.6307
31 1 -0.3634 0.5859 0.8442
32 1 -0.3633 0.4383 -0.9296
33 1 -0.3634 -1.0241 0.0852
34 1 1.2240 1.8357 -1.4628
35 1 1.4554 3.1134 -3.5815
36 1 2.4660 2.0217 -5.5428
37 1 3.0244 -1.5080 -3.4333
38 1 0.9835 1.5597 1.6012
39 1 0.3495 1.0413 3.1845
40 1 3.0514 2.3568 2.6425
41 1 1.6643 3.0874 3.4866
42 1 3.3264 2.2531 5.1147
43 1 1.8143 1.3223 5.2345
44 1 3.1176 -0.4737 6.3183
45 1 4.4270 -1.3002 5.4404
46 1 5.8128 0.7516 5.5758
47 1 4.5033 1.5780 6.4539
48 1 5.1287 -0.8092 7.8278
49 1 8.0673 0.4679 11.0055
50 1 1.7119 -1.0380 4.3140
51 1 3.0778 -1.6367 3.3375
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001698697362.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:41:46
Heat of formation + Delta-G solvation = -47.222062 kcal
Electronic energy + Delta-G solvation = -30285.779969 eV
Core-core repulsion = 26184.885487 eV
Total energy + Delta-G solvation = -4100.894482 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 347.200 amu
Computer time = 1.15 seconds
Orbital eigenvalues (eV)
-42.09614 -41.17635 -39.52282 -38.63529 -37.12403 -35.26027 -33.68009 -33.22141
-32.99789 -32.53446 -31.05913 -29.38852 -27.05490 -25.86818 -25.40661 -24.61788
-23.80506 -23.36782 -22.73275 -21.26624 -20.25567 -19.63865 -19.59843 -18.25654
-17.85975 -17.46668 -16.98103 -16.76562 -16.63538 -16.22594 -15.97532 -15.78516
-15.39447 -15.25831 -15.11440 -14.89447 -14.80392 -14.64521 -14.40783 -14.29123
-13.94872 -13.89688 -13.66985 -13.32673 -13.21058 -13.01572 -12.95963 -12.67289
-12.49138 -12.35702 -12.29217 -12.12738 -11.98162 -11.83930 -11.67654 -11.58203
-11.28873 -10.97423 -10.90610 -10.71266 -10.58483 -9.74285 -9.49121 -9.30993
-8.05154 -5.38928 0.13356 0.22424 1.27295 1.36344 1.40379 1.46073
1.47630 2.30617 2.46659 2.78741 3.18285 3.26194 3.48549 3.52880
3.56953 3.72922 3.73846 3.75818 3.85200 3.89051 3.95133 4.05605
4.13304 4.29426 4.30783 4.36872 4.42746 4.50502 4.54766 4.60319
4.62595 4.73480 4.75989 4.80905 4.83129 4.86756 4.98493 5.00482
5.06417 5.10159 5.13544 5.22223 5.30365 5.38495 5.43091 5.47382
5.51700 5.73137 6.09743 6.19071 6.27682 6.95684 6.96913 7.05740
7.82289 8.01376 9.16257
Molecular weight = 347.20amu
Principal moments of inertia in cm(-1)
A = 0.019968 B = 0.001824 C = 0.001816
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1401.889393 B =15345.065732 C =15416.735557
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.174 4.174
2 C 0.068 3.932
3 H 0.125 0.875
4 O -0.308 6.308
5 C 0.067 3.933
6 C -0.165 4.165
7 C -0.119 4.119
8 C 0.046 3.954
9 N -0.475 5.475
10 C 0.050 3.950
11 C 0.512 3.488
12 O -0.573 6.573
13 N -0.600 5.600
14 C 0.093 3.907
15 C -0.132 4.132
16 C -0.120 4.120
17 C -0.085 4.085
18 H 0.061 0.939
19 C -0.113 4.113
20 C 0.155 3.845
21 N -0.761 5.761
22 C -0.238 4.238
23 H 0.055 0.945
24 C -0.066 4.066
25 N -0.983 5.983
26 Si 0.958 3.042
27 H -0.281 1.281
28 H -0.293 1.293
29 H -0.249 1.249
30 C 0.121 3.879
31 H 0.113 0.887
32 H 0.092 0.908
33 H 0.059 0.941
34 H 0.171 0.829
35 H 0.177 0.823
36 H 0.183 0.817
37 H 0.155 0.845
38 H 0.113 0.887
39 H 0.099 0.901
40 H 0.061 0.939
41 H 0.105 0.895
42 H 0.061 0.939
43 H 0.077 0.923
44 H 0.076 0.924
45 H 0.059 0.941
46 H 0.013 0.987
47 H 0.034 0.966
48 H 0.366 0.634
49 H 0.258 0.742
50 H 0.087 0.913
51 H 0.067 0.933
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -24.366 5.863 -28.388 37.868
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.232 4.232
2 C 0.008 3.992
3 H 0.142 0.858
4 O -0.220 6.220
5 C 0.020 3.980
6 C -0.191 4.191
7 C -0.139 4.139
8 C -0.111 4.111
9 N -0.185 5.185
10 C -0.108 4.108
11 C 0.300 3.700
12 O -0.452 6.452
13 N -0.333 5.333
14 C -0.027 4.027
15 C -0.169 4.169
16 C -0.157 4.157
17 C -0.105 4.105
18 H 0.079 0.921
19 C -0.151 4.151
20 C 0.030 3.970
21 N -0.407 5.407
22 C -0.369 4.369
23 H 0.073 0.927
24 C -0.257 4.257
25 N -0.634 5.634
26 Si 0.785 3.215
27 H -0.207 1.207
28 H -0.220 1.220
29 H -0.173 1.173
30 C -0.001 4.001
31 H 0.132 0.868
32 H 0.111 0.889
33 H 0.078 0.922
34 H 0.188 0.812
35 H 0.195 0.805
36 H 0.200 0.800
37 H 0.172 0.828
38 H 0.131 0.869
39 H 0.117 0.883
40 H 0.079 0.921
41 H 0.123 0.877
42 H 0.080 0.920
43 H 0.095 0.905
44 H 0.094 0.906
45 H 0.077 0.923
46 H 0.031 0.969
47 H 0.052 0.948
48 H 0.199 0.801
49 H 0.067 0.933
50 H 0.105 0.895
51 H 0.086 0.914
Dipole moment (debyes) X Y Z Total
from point charges -23.576 4.868 -29.103 37.769
hybrid contribution 0.305 -0.700 1.679 1.844
sum -23.271 4.168 -27.424 36.208
Atomic orbital electron populations
1.22466 0.89957 1.04578 1.06154 1.22427 0.97611 0.97172 0.81975
0.85761 1.86215 1.81440 1.37961 1.16411 1.20328 0.97726 0.92437
0.87557 1.22136 1.02599 0.92724 1.01634 1.22440 0.97081 1.02547
0.91790 1.23286 0.96553 0.90621 1.00636 1.67739 1.15979 1.08992
1.25775 1.22262 1.00180 1.01254 0.87093 1.20640 0.78491 0.85824
0.85092 1.90731 1.46379 1.21740 1.86367 1.48094 1.55960 1.23007
1.06231 1.22348 0.95731 0.81034 1.03629 1.21944 0.99857 0.99157
0.95989 1.21662 1.00216 0.95586 0.98245 1.21389 0.97720 0.96152
0.95246 0.92086 1.21631 0.98561 0.98468 0.96481 1.20821 0.94591
0.96075 0.85559 1.42771 1.50373 1.23454 1.24133 1.19053 1.14522
1.02073 1.01283 0.92695 1.25567 0.99649 1.02787 0.97745 1.69892
1.35604 1.41349 1.16515 0.85366 0.79403 0.79732 0.77035 1.20692
1.21972 1.17306 1.21697 0.97171 0.95505 0.85769 0.86844 0.88910
0.92155 0.81166 0.80514 0.80029 0.82764 0.86928 0.88330 0.92052
0.87705 0.92010 0.90466 0.90565 0.92261 0.96914 0.94796 0.80095
0.93284 0.89459 0.91413
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 17.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.17 -1.27 8.80 71.98 0.63 -0.64 16
2 C 0.07 0.93 1.79 29.85 0.05 0.98 16
3 H 0.13 0.94 5.41 -2.39 -0.01 0.92 16
4 O -0.31 -6.40 9.38 -73.94 -0.69 -7.10 16
5 C 0.07 1.15 6.60 22.60 0.15 1.30 16
6 C -0.16 -1.59 8.32 22.56 0.19 -1.40 16
7 C -0.12 -0.90 10.11 22.34 0.23 -0.67 16
8 C 0.05 0.55 11.18 84.70 0.95 1.50 16
9 N -0.48 -9.07 10.36 -195.44 -2.02 -11.10 16
10 C 0.05 0.99 11.14 84.80 0.94 1.93 16
11 C 0.51 11.00 7.03 87.66 0.62 11.62 16
12 O -0.57 -18.77 15.98 15.68 0.25 -18.51 16
13 N -0.60 -9.82 2.97 -818.06 -2.43 -12.25 16
14 C 0.09 0.67 5.37 86.36 0.46 1.14 16
15 C -0.13 -1.27 6.08 30.67 0.19 -1.09 16
16 C -0.12 -1.98 4.95 30.62 0.15 -1.83 16
17 C -0.09 -1.83 2.35 -10.57 -0.02 -1.85 16
18 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16
19 C -0.11 -3.11 4.80 30.59 0.15 -2.96 16
20 C 0.16 5.80 6.02 86.38 0.52 6.32 16
21 N -0.76 -36.13 5.41 -343.44 -1.86 -37.99 16
22 C -0.24 -13.89 10.47 84.03 0.88 -13.01 16
23 H 0.06 3.50 8.06 -2.91 -0.02 3.48 16
24 C -0.07 -3.95 5.50 84.86 0.47 -3.49 16
25 N -0.98 -63.73 13.97 21.65 0.30 -63.43 16
26 Si 0.96 45.92 27.74 68.60 1.90 47.82 16
27 H -0.28 -13.25 7.11 99.48 0.71 -12.54 16
28 H -0.29 -14.11 7.11 99.48 0.71 -13.40 16
29 H -0.25 -10.63 6.52 99.48 0.65 -9.98 16
30 C 0.12 2.44 5.73 86.51 0.50 2.94 16
31 H 0.11 0.15 5.98 -2.39 -0.01 0.13 16
32 H 0.09 0.41 7.01 -2.38 -0.02 0.39 16
33 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16
34 H 0.17 0.47 5.66 -2.91 -0.02 0.45 16
35 H 0.18 -0.03 8.06 -2.91 -0.02 -0.06 16
36 H 0.18 1.10 8.06 -2.91 -0.02 1.08 16
37 H 0.16 3.06 8.06 -2.91 -0.02 3.04 16
38 H 0.11 0.13 4.60 -2.39 -0.01 0.12 16
39 H 0.10 0.39 8.14 -2.39 -0.02 0.38 16
40 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16
41 H 0.10 0.55 8.14 -2.39 -0.02 0.53 16
42 H 0.06 1.25 6.50 -2.39 -0.02 1.23 16
43 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16
44 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16
45 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16
46 H 0.01 0.51 8.14 -2.38 -0.02 0.49 16
47 H 0.03 1.25 6.54 -2.39 -0.02 1.23 16
48 H 0.37 16.45 5.53 -92.71 -0.51 15.94 16
49 H 0.26 15.90 8.31 -92.71 -0.77 15.13 16
50 H 0.09 1.50 8.14 -2.38 -0.02 1.48 16
51 H 0.07 1.76 7.03 -2.39 -0.02 1.74 16
Total: -1.00 -85.27 399.00 2.87 -82.40
By element:
Atomic # 1 Polarization: 18.98 SS G_CDS: 0.37 Total: 19.35 kcal
Atomic # 6 Polarization: -6.25 SS G_CDS: 7.04 Total: 0.80 kcal
Atomic # 7 Polarization: -118.76 SS G_CDS: -6.00 Total: -124.76 kcal
Atomic # 8 Polarization: -25.17 SS G_CDS: -0.44 Total: -25.61 kcal
Atomic # 14 Polarization: 45.92 SS G_CDS: 1.90 Total: 47.82 kcal
Total: -85.27 2.87 -82.40 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001698697362.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 35.178 kcal
(2) G-P(sol) polarization free energy of solvation -85.271 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.093 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.871 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.400 kcal
(6) G-S(sol) free energy of system = (1) + (5) -47.222 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.15 seconds