Wall clock time and date at job start Wed Apr 1 2020 04:41:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08998 * 109.47679 * 2 1 4 4 O 1.42899 * 109.47279 * 120.00425 * 2 1 3 5 5 C 1.35912 * 116.99683 * 274.88022 * 4 2 1 6 6 C 1.39136 * 120.47576 * 5.08256 * 5 4 2 7 7 C 1.38537 * 118.37424 * 179.71185 * 6 5 4 8 8 C 1.38257 * 119.22068 * 0.57906 * 7 6 5 9 9 N 1.31844 * 120.88689 * 359.68561 * 8 7 6 10 10 C 1.31846 * 121.78144 * 0.02562 * 9 8 7 11 11 C 1.50699 * 109.47277 * 240.00252 * 2 1 3 12 12 O 1.21284 * 120.00563 * 245.00272 * 11 2 1 13 13 N 1.34777 * 120.00223 * 64.99675 * 11 2 1 14 14 C 1.47205 * 120.80864 * 0.14922 * 13 11 2 15 15 C 1.53195 * 108.85423 * 126.33709 * 14 13 11 16 16 C 1.53038 * 109.31252 * 54.64859 * 15 14 13 17 17 C 1.53047 * 109.53769 * 298.63522 * 16 15 14 18 18 H 1.08996 * 109.49421 * 301.41345 * 17 16 15 19 19 C 1.53001 * 109.52163 * 181.33517 * 17 16 15 20 20 C 1.52995 * 109.47467 * 65.14603 * 19 17 16 21 21 N 1.46500 * 109.47358 * 180.02562 * 20 19 17 22 22 C 1.36941 * 120.00299 * 180.02562 * 21 20 19 23 23 H 1.08003 * 119.99322 * 359.97438 * 22 21 20 24 24 C 1.38811 * 120.00258 * 179.97438 * 22 21 20 25 25 N 1.31616 * 119.99856 * 179.97438 * 24 22 21 26 26 Si 1.86803 * 119.99837 * 0.02562 * 24 22 21 27 27 H 1.48498 * 109.47359 * 89.99614 * 26 24 22 28 28 H 1.48504 * 109.46783 * 209.99908 * 26 24 22 29 29 H 1.48503 * 109.47070 * 329.99683 * 26 24 22 30 30 C 1.46928 * 120.63352 * 180.02562 * 13 11 2 31 31 H 1.09001 * 109.47290 * 59.99865 * 1 2 3 32 32 H 1.09001 * 109.47060 * 179.97438 * 1 2 3 33 33 H 1.09000 * 109.47241 * 299.99331 * 1 2 3 34 34 H 1.07999 * 120.81086 * 0.02562 * 6 5 4 35 35 H 1.07999 * 120.39151 * 180.31038 * 7 6 5 36 36 H 1.08003 * 119.55772 * 179.69826 * 8 7 6 37 37 H 1.08002 * 119.65781 * 179.97438 * 10 9 8 38 38 H 1.08992 * 109.53641 * 6.53158 * 14 13 11 39 39 H 1.09000 * 109.67998 * 246.21983 * 14 13 11 40 40 H 1.08997 * 109.49651 * 294.69674 * 15 14 13 41 41 H 1.09000 * 109.52816 * 174.61688 * 15 14 13 42 42 H 1.09006 * 109.46227 * 178.62053 * 16 15 14 43 43 H 1.08994 * 109.45081 * 58.65187 * 16 15 14 44 44 H 1.08996 * 109.47090 * 185.14977 * 19 17 16 45 45 H 1.09006 * 109.47103 * 305.14143 * 19 17 16 46 46 H 1.08997 * 109.47059 * 299.99757 * 20 19 17 47 47 H 1.08997 * 109.47323 * 59.99819 * 20 19 17 48 48 H 0.96998 * 119.99679 * 359.97438 * 21 20 19 49 49 H 0.96996 * 119.99758 * 180.02562 * 25 24 22 50 50 H 1.08997 * 109.58436 * 113.82515 * 30 13 11 51 51 H 1.09000 * 109.58485 * 353.54618 * 30 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0063 -0.6737 1.1667 5 6 2.1148 0.0632 2.3036 6 6 1.6731 1.3822 2.3344 7 6 1.7992 2.0912 3.5179 8 6 2.3664 1.4740 4.6173 9 7 2.7801 0.2237 4.5531 10 6 2.6730 -0.4872 3.4479 11 6 2.0323 -0.7103 -1.2305 12 8 2.6529 -1.7467 -1.1217 13 7 1.7919 -0.1941 -2.4520 14 6 1.0432 1.0641 -2.6048 15 6 1.8729 2.0341 -3.4520 16 6 2.2440 1.3604 -4.7751 17 6 3.0910 0.1165 -4.4962 18 1 3.9880 0.4029 -3.9474 19 6 3.4896 -0.5380 -5.8205 20 6 4.4076 0.4057 -6.5999 21 7 4.7888 -0.2207 -7.8681 22 6 5.6130 0.4414 -8.7384 23 1 5.9817 1.4257 -8.4900 24 6 5.9747 -0.1524 -9.9399 25 7 6.7664 0.4843 -10.7765 26 14 5.3364 -1.8546 -10.3698 27 1 4.0514 -1.7307 -11.1037 28 1 6.3292 -2.5541 -11.2244 29 1 5.1214 -2.6320 -9.1229 30 6 2.2747 -0.8754 -3.6610 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3634 0.5137 0.8900 34 1 1.2379 1.8404 1.4586 35 1 1.4625 3.1155 3.5797 36 1 2.4718 2.0232 5.5413 37 1 3.0236 -1.5087 3.4335 38 1 0.8604 1.5009 -1.6231 39 1 0.0924 0.8677 -3.1002 40 1 2.7815 2.3023 -2.9130 41 1 1.2900 2.9330 -3.6525 42 1 2.8136 2.0571 -5.3902 43 1 1.3351 1.0701 -5.3020 44 1 4.0143 -1.4722 -5.6205 45 1 2.5949 -0.7425 -6.4085 46 1 3.8829 1.3399 -6.7998 47 1 5.3023 0.6102 -6.0118 48 1 4.4580 -1.1049 -8.0910 49 1 7.0188 0.0695 -11.6162 50 1 1.4251 -1.2317 -4.2435 51 1 2.9036 -1.7196 -3.3782 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001698697363.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:41:51 Heat of formation + Delta-G solvation = -21.369774 kcal Electronic energy + Delta-G solvation = -30253.545453 eV Core-core repulsion = 26153.772010 eV Total energy + Delta-G solvation = -4099.773443 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.46323 -40.49727 -38.83496 -37.74856 -35.68379 -33.99291 -32.75110 -32.47549 -32.19749 -31.06532 -30.46745 -28.00829 -26.42181 -25.00323 -24.31959 -23.91955 -23.05407 -22.32118 -21.35810 -20.28365 -19.55930 -19.05695 -17.63745 -17.47768 -17.28609 -16.79347 -16.32325 -16.02946 -15.48468 -14.97127 -14.94164 -14.80114 -14.55380 -14.41296 -14.22734 -14.06981 -13.83934 -13.62997 -13.44913 -13.26552 -13.06294 -12.86749 -12.82569 -12.64918 -12.30030 -12.06468 -11.80584 -11.69398 -11.47030 -11.22003 -11.13055 -10.84739 -10.70643 -10.57755 -10.34287 -10.32171 -10.12665 -10.06601 -9.97640 -9.59686 -8.98319 -8.91498 -8.86803 -7.22662 -5.77095 -3.12472 0.64763 0.73811 2.01102 2.16745 2.92598 3.32080 3.37493 3.40461 3.45308 3.79334 3.99301 4.06436 4.21600 4.23824 4.29186 4.35046 4.55145 4.59142 4.59365 4.61970 4.71416 4.73007 4.88867 4.94579 4.98013 4.98673 5.23644 5.24762 5.35691 5.43428 5.43747 5.49784 5.52426 5.54592 5.57171 5.59547 5.75079 5.77696 5.86675 5.92406 5.96796 6.09518 6.16522 6.18802 6.33028 6.66537 6.73177 6.77491 6.96679 7.49800 7.75076 7.99309 8.42100 9.21476 9.94020 10.13923 11.41362 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.021751 B = 0.001790 C = 0.001780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1287.015526 B =15640.958339 C =15725.847627 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.067 3.933 3 H 0.098 0.902 4 O -0.277 6.277 5 C 0.083 3.917 6 C -0.170 4.170 7 C -0.130 4.130 8 C 0.056 3.944 9 N -0.446 5.446 10 C 0.078 3.922 11 C 0.520 3.480 12 O -0.514 6.514 13 N -0.605 5.605 14 C 0.099 3.901 15 C -0.137 4.137 16 C -0.119 4.119 17 C -0.095 4.095 18 H 0.076 0.924 19 C -0.124 4.124 20 C 0.158 3.842 21 N -0.758 5.758 22 C -0.244 4.244 23 H 0.089 0.911 24 C 0.003 3.997 25 N -0.935 5.935 26 Si 0.886 3.114 27 H -0.284 1.284 28 H -0.291 1.291 29 H -0.277 1.277 30 C 0.117 3.883 31 H 0.088 0.912 32 H 0.078 0.922 33 H 0.075 0.925 34 H 0.140 0.860 35 H 0.139 0.861 36 H 0.159 0.841 37 H 0.166 0.834 38 H 0.082 0.918 39 H 0.077 0.923 40 H 0.068 0.932 41 H 0.078 0.922 42 H 0.079 0.921 43 H 0.066 0.934 44 H 0.065 0.935 45 H 0.064 0.936 46 H 0.029 0.971 47 H 0.024 0.976 48 H 0.360 0.640 49 H 0.259 0.741 50 H 0.071 0.929 51 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.590 4.974 29.182 34.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.006 3.994 3 H 0.116 0.884 4 O -0.188 6.188 5 C 0.035 3.965 6 C -0.197 4.197 7 C -0.149 4.149 8 C -0.101 4.101 9 N -0.155 5.155 10 C -0.081 4.081 11 C 0.306 3.694 12 O -0.388 6.388 13 N -0.340 5.340 14 C -0.024 4.024 15 C -0.175 4.175 16 C -0.157 4.157 17 C -0.115 4.115 18 H 0.094 0.906 19 C -0.162 4.162 20 C 0.031 3.969 21 N -0.403 5.403 22 C -0.374 4.374 23 H 0.107 0.893 24 C -0.193 4.193 25 N -0.583 5.583 26 Si 0.716 3.284 27 H -0.211 1.211 28 H -0.217 1.217 29 H -0.203 1.203 30 C -0.005 4.005 31 H 0.106 0.894 32 H 0.097 0.903 33 H 0.094 0.906 34 H 0.158 0.842 35 H 0.157 0.843 36 H 0.176 0.824 37 H 0.183 0.817 38 H 0.100 0.900 39 H 0.095 0.905 40 H 0.086 0.914 41 H 0.097 0.903 42 H 0.097 0.903 43 H 0.085 0.915 44 H 0.083 0.917 45 H 0.083 0.917 46 H 0.046 0.954 47 H 0.042 0.958 48 H 0.193 0.807 49 H 0.069 0.931 50 H 0.090 0.910 51 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -17.694 3.985 29.850 34.928 hybrid contribution -0.855 -0.406 -1.351 1.650 sum -18.549 3.579 28.499 34.191 Atomic orbital electron populations 1.22523 0.92357 1.05019 1.04237 1.22227 0.95950 0.96982 0.84202 0.88438 1.86253 1.80720 1.36359 1.15430 1.20265 0.96747 0.91225 0.88283 1.21770 1.03752 0.93984 1.00165 1.22020 0.98802 1.01185 0.92935 1.22722 0.97155 0.91273 0.98925 1.67771 1.14750 1.07483 1.25491 1.22302 0.98538 1.01089 0.86131 1.19928 0.80185 0.85552 0.83776 1.90766 1.39297 1.23016 1.85742 1.48056 1.55680 1.24731 1.05513 1.22073 0.95267 0.84108 1.00951 1.21960 1.00490 0.97986 0.97044 1.21669 1.00317 0.97256 0.96422 1.21454 0.98467 0.95235 0.96350 0.90553 1.21752 1.00304 0.99612 0.94577 1.20640 0.95087 0.94419 0.86728 1.42731 1.59660 1.19051 1.18879 1.19065 1.20619 1.00895 0.96851 0.89293 1.24686 0.99627 0.98100 0.96865 1.69703 1.39443 1.38122 1.10999 0.86525 0.78384 0.85582 0.77914 1.21096 1.21708 1.20310 1.21789 0.98832 0.95838 0.84007 0.89389 0.90293 0.90612 0.84199 0.84314 0.82382 0.81697 0.89972 0.90527 0.91353 0.90339 0.90270 0.91544 0.91668 0.91725 0.95354 0.95800 0.80707 0.93073 0.91034 0.88747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.95 8.77 37.15 0.33 -0.63 16 2 C 0.07 0.52 1.81 -27.89 -0.05 0.47 16 3 H 0.10 0.56 5.62 -51.93 -0.29 0.27 16 4 O -0.28 -2.87 9.35 -39.32 -0.37 -3.24 16 5 C 0.08 0.73 6.62 -39.07 -0.26 0.48 16 6 C -0.17 -1.09 8.35 -39.14 -0.33 -1.42 16 7 C -0.13 -0.72 10.11 -39.46 -0.40 -1.11 16 8 C 0.06 0.39 11.18 -17.54 -0.20 0.19 16 9 N -0.45 -4.22 10.36 -13.12 -0.14 -4.35 16 10 C 0.08 0.73 11.14 -17.37 -0.19 0.54 16 11 C 0.52 5.78 7.12 -10.99 -0.08 5.70 16 12 O -0.51 -8.08 15.92 -14.31 -0.23 -8.31 16 13 N -0.60 -5.55 2.98 -172.52 -0.51 -6.06 16 14 C 0.10 0.57 4.99 -3.56 -0.02 0.55 16 15 C -0.14 -0.92 6.08 -26.61 -0.16 -1.08 16 16 C -0.12 -1.13 4.96 -26.69 -0.13 -1.26 16 17 C -0.10 -1.07 2.34 -90.48 -0.21 -1.29 16 18 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 19 C -0.12 -1.77 4.80 -26.73 -0.13 -1.90 16 20 C 0.16 2.97 6.02 -4.04 -0.02 2.95 16 21 N -0.76 -18.13 5.41 -59.91 -0.32 -18.45 16 22 C -0.24 -7.00 10.47 -15.06 -0.16 -7.16 16 23 H 0.09 2.72 8.06 -52.48 -0.42 2.29 16 24 C 0.00 0.09 5.50 -17.43 -0.10 -0.01 16 25 N -0.93 -29.56 13.97 55.49 0.78 -28.79 16 26 Si 0.89 22.28 27.74 -169.99 -4.71 17.56 16 27 H -0.28 -7.05 7.11 56.52 0.40 -6.65 16 28 H -0.29 -7.41 7.11 56.52 0.40 -7.00 16 29 H -0.28 -6.57 6.52 56.52 0.37 -6.20 16 30 C 0.12 1.24 5.71 -3.69 -0.02 1.22 16 31 H 0.09 0.29 5.43 -51.93 -0.28 0.01 16 32 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.07 0.30 6.98 -51.93 -0.36 -0.06 16 34 H 0.14 0.56 5.61 -52.49 -0.29 0.26 16 35 H 0.14 0.36 8.06 -52.49 -0.42 -0.06 16 36 H 0.16 0.66 8.06 -52.48 -0.42 0.24 16 37 H 0.17 1.38 8.06 -52.49 -0.42 0.96 16 38 H 0.08 0.28 4.70 -51.93 -0.24 0.04 16 39 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 40 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 42 H 0.08 0.86 6.51 -51.93 -0.34 0.52 16 43 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 44 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 45 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 46 H 0.03 0.53 6.54 -51.93 -0.34 0.19 16 47 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 48 H 0.36 8.40 5.53 -40.82 -0.23 8.17 16 49 H 0.26 7.80 8.31 -40.82 -0.34 7.46 16 50 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 51 H 0.09 1.19 7.00 -51.93 -0.36 0.83 16 LS Contribution 398.30 15.07 6.00 6.00 Total: -1.00 -36.56 398.30 -9.46 -46.03 By element: Atomic # 1 Polarization: 11.19 SS G_CDS: -7.83 Total: 3.36 kcal Atomic # 6 Polarization: -1.62 SS G_CDS: -2.13 Total: -3.75 kcal Atomic # 7 Polarization: -57.46 SS G_CDS: -0.20 Total: -57.66 kcal Atomic # 8 Polarization: -10.95 SS G_CDS: -0.60 Total: -11.55 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -4.71 Total: 17.56 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -36.56 -9.46 -46.03 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698697363.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.659 kcal (2) G-P(sol) polarization free energy of solvation -36.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.464 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.029 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.370 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds