Wall clock time and date at job start Wed Apr 1 2020 04:41:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08998 * 109.47679 * 2 1 4 4 O 1.42899 * 109.47279 * 120.00425 * 2 1 3 5 5 C 1.35912 * 116.99683 * 274.88022 * 4 2 1 6 6 C 1.39136 * 120.47576 * 5.08256 * 5 4 2 7 7 C 1.38537 * 118.37424 * 179.71185 * 6 5 4 8 8 C 1.38257 * 119.22068 * 0.57906 * 7 6 5 9 9 N 1.31844 * 120.88689 * 359.68561 * 8 7 6 10 10 C 1.31846 * 121.78144 * 0.02562 * 9 8 7 11 11 C 1.50699 * 109.47277 * 240.00252 * 2 1 3 12 12 O 1.21284 * 120.00563 * 245.00272 * 11 2 1 13 13 N 1.34777 * 120.00223 * 64.99675 * 11 2 1 14 14 C 1.47205 * 120.80864 * 0.14922 * 13 11 2 15 15 C 1.53195 * 108.85423 * 126.33709 * 14 13 11 16 16 C 1.53038 * 109.31252 * 54.64859 * 15 14 13 17 17 C 1.53047 * 109.53769 * 298.63522 * 16 15 14 18 18 H 1.08996 * 109.49421 * 301.41345 * 17 16 15 19 19 C 1.53001 * 109.52163 * 181.33517 * 17 16 15 20 20 C 1.52995 * 109.47467 * 65.14603 * 19 17 16 21 21 N 1.46500 * 109.47358 * 180.02562 * 20 19 17 22 22 C 1.36941 * 120.00299 * 180.02562 * 21 20 19 23 23 H 1.08003 * 119.99322 * 359.97438 * 22 21 20 24 24 C 1.38811 * 120.00258 * 179.97438 * 22 21 20 25 25 N 1.31616 * 119.99856 * 179.97438 * 24 22 21 26 26 Si 1.86803 * 119.99837 * 0.02562 * 24 22 21 27 27 H 1.48498 * 109.47359 * 89.99614 * 26 24 22 28 28 H 1.48504 * 109.46783 * 209.99908 * 26 24 22 29 29 H 1.48503 * 109.47070 * 329.99683 * 26 24 22 30 30 C 1.46928 * 120.63352 * 180.02562 * 13 11 2 31 31 H 1.09001 * 109.47290 * 59.99865 * 1 2 3 32 32 H 1.09001 * 109.47060 * 179.97438 * 1 2 3 33 33 H 1.09000 * 109.47241 * 299.99331 * 1 2 3 34 34 H 1.07999 * 120.81086 * 0.02562 * 6 5 4 35 35 H 1.07999 * 120.39151 * 180.31038 * 7 6 5 36 36 H 1.08003 * 119.55772 * 179.69826 * 8 7 6 37 37 H 1.08002 * 119.65781 * 179.97438 * 10 9 8 38 38 H 1.08992 * 109.53641 * 6.53158 * 14 13 11 39 39 H 1.09000 * 109.67998 * 246.21983 * 14 13 11 40 40 H 1.08997 * 109.49651 * 294.69674 * 15 14 13 41 41 H 1.09000 * 109.52816 * 174.61688 * 15 14 13 42 42 H 1.09006 * 109.46227 * 178.62053 * 16 15 14 43 43 H 1.08994 * 109.45081 * 58.65187 * 16 15 14 44 44 H 1.08996 * 109.47090 * 185.14977 * 19 17 16 45 45 H 1.09006 * 109.47103 * 305.14143 * 19 17 16 46 46 H 1.08997 * 109.47059 * 299.99757 * 20 19 17 47 47 H 1.08997 * 109.47323 * 59.99819 * 20 19 17 48 48 H 0.96998 * 119.99679 * 359.97438 * 21 20 19 49 49 H 0.96996 * 119.99758 * 180.02562 * 25 24 22 50 50 H 1.08997 * 109.58436 * 113.82515 * 30 13 11 51 51 H 1.09000 * 109.58485 * 353.54618 * 30 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0063 -0.6737 1.1667 5 6 2.1148 0.0632 2.3036 6 6 1.6731 1.3822 2.3344 7 6 1.7992 2.0912 3.5179 8 6 2.3664 1.4740 4.6173 9 7 2.7801 0.2237 4.5531 10 6 2.6730 -0.4872 3.4479 11 6 2.0323 -0.7103 -1.2305 12 8 2.6529 -1.7467 -1.1217 13 7 1.7919 -0.1941 -2.4520 14 6 1.0432 1.0641 -2.6048 15 6 1.8729 2.0341 -3.4520 16 6 2.2440 1.3604 -4.7751 17 6 3.0910 0.1165 -4.4962 18 1 3.9880 0.4029 -3.9474 19 6 3.4896 -0.5380 -5.8205 20 6 4.4076 0.4057 -6.5999 21 7 4.7888 -0.2207 -7.8681 22 6 5.6130 0.4414 -8.7384 23 1 5.9817 1.4257 -8.4900 24 6 5.9747 -0.1524 -9.9399 25 7 6.7664 0.4843 -10.7765 26 14 5.3364 -1.8546 -10.3698 27 1 4.0514 -1.7307 -11.1037 28 1 6.3292 -2.5541 -11.2244 29 1 5.1214 -2.6320 -9.1229 30 6 2.2747 -0.8754 -3.6610 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3634 0.5137 0.8900 34 1 1.2379 1.8404 1.4586 35 1 1.4625 3.1155 3.5797 36 1 2.4718 2.0232 5.5413 37 1 3.0236 -1.5087 3.4335 38 1 0.8604 1.5009 -1.6231 39 1 0.0924 0.8677 -3.1002 40 1 2.7815 2.3023 -2.9130 41 1 1.2900 2.9330 -3.6525 42 1 2.8136 2.0571 -5.3902 43 1 1.3351 1.0701 -5.3020 44 1 4.0143 -1.4722 -5.6205 45 1 2.5949 -0.7425 -6.4085 46 1 3.8829 1.3399 -6.7998 47 1 5.3023 0.6102 -6.0118 48 1 4.4580 -1.1049 -8.0910 49 1 7.0188 0.0695 -11.6162 50 1 1.4251 -1.2317 -4.2435 51 1 2.9036 -1.7196 -3.3782 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001698697363.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:41:49 Heat of formation + Delta-G solvation = -45.791606 kcal Electronic energy + Delta-G solvation = -30254.604463 eV Core-core repulsion = 26153.772010 eV Total energy + Delta-G solvation = -4100.832453 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.09595 -41.17626 -39.52127 -38.63069 -37.12523 -35.29388 -33.69470 -33.21882 -32.98408 -32.52946 -31.05793 -29.36232 -27.09084 -25.83330 -25.41880 -24.61683 -23.80325 -23.36912 -22.73036 -21.27759 -20.27094 -19.62809 -19.59999 -18.23762 -17.85450 -17.46505 -16.97764 -16.76667 -16.63319 -16.25247 -15.97806 -15.78028 -15.38762 -15.25826 -15.09950 -14.90385 -14.79856 -14.64846 -14.40623 -14.29415 -13.94105 -13.91183 -13.66755 -13.34299 -13.21924 -13.00038 -12.92504 -12.67470 -12.47043 -12.32233 -12.30628 -12.14320 -11.95757 -11.83291 -11.67733 -11.56733 -11.29315 -10.96399 -10.90326 -10.71267 -10.58496 -9.74504 -9.49021 -9.30978 -8.05129 -5.38937 0.13310 0.22451 1.34352 1.36626 1.39907 1.40270 1.47745 2.30408 2.46670 2.78692 3.18294 3.26106 3.49009 3.52734 3.57154 3.73366 3.74205 3.76000 3.85744 3.88978 3.94676 4.05430 4.13416 4.29157 4.31272 4.37214 4.43040 4.50752 4.54776 4.61006 4.63539 4.73682 4.76165 4.81008 4.83112 4.87103 4.98691 5.00358 5.06648 5.10534 5.14199 5.22462 5.30405 5.38658 5.43311 5.47308 5.51824 5.73139 6.10000 6.19087 6.27781 6.95821 6.97408 7.05759 7.82297 8.01418 9.16320 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.021751 B = 0.001790 C = 0.001780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1287.015526 B =15640.958339 C =15725.847627 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.068 3.932 3 H 0.125 0.875 4 O -0.307 6.307 5 C 0.068 3.932 6 C -0.165 4.165 7 C -0.119 4.119 8 C 0.046 3.954 9 N -0.475 5.475 10 C 0.049 3.951 11 C 0.511 3.489 12 O -0.575 6.575 13 N -0.599 5.599 14 C 0.092 3.908 15 C -0.132 4.132 16 C -0.119 4.119 17 C -0.085 4.085 18 H 0.059 0.941 19 C -0.113 4.113 20 C 0.155 3.845 21 N -0.761 5.761 22 C -0.239 4.239 23 H 0.055 0.945 24 C -0.066 4.066 25 N -0.983 5.983 26 Si 0.958 3.042 27 H -0.273 1.273 28 H -0.296 1.296 29 H -0.254 1.254 30 C 0.120 3.880 31 H 0.114 0.886 32 H 0.060 0.940 33 H 0.094 0.906 34 H 0.171 0.829 35 H 0.177 0.823 36 H 0.183 0.817 37 H 0.155 0.845 38 H 0.114 0.886 39 H 0.100 0.900 40 H 0.060 0.940 41 H 0.105 0.895 42 H 0.061 0.939 43 H 0.078 0.922 44 H 0.057 0.943 45 H 0.077 0.923 46 H 0.035 0.965 47 H 0.012 0.988 48 H 0.366 0.634 49 H 0.258 0.742 50 H 0.088 0.912 51 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.092 6.502 30.376 38.118 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.008 3.992 3 H 0.143 0.857 4 O -0.220 6.220 5 C 0.020 3.980 6 C -0.192 4.192 7 C -0.139 4.139 8 C -0.111 4.111 9 N -0.185 5.185 10 C -0.108 4.108 11 C 0.299 3.701 12 O -0.454 6.454 13 N -0.332 5.332 14 C -0.028 4.028 15 C -0.169 4.169 16 C -0.157 4.157 17 C -0.105 4.105 18 H 0.078 0.922 19 C -0.151 4.151 20 C 0.030 3.970 21 N -0.407 5.407 22 C -0.370 4.370 23 H 0.073 0.927 24 C -0.257 4.257 25 N -0.634 5.634 26 Si 0.785 3.215 27 H -0.199 1.199 28 H -0.222 1.222 29 H -0.179 1.179 30 C -0.002 4.002 31 H 0.132 0.868 32 H 0.080 0.920 33 H 0.112 0.888 34 H 0.188 0.812 35 H 0.195 0.805 36 H 0.200 0.800 37 H 0.172 0.828 38 H 0.132 0.868 39 H 0.118 0.882 40 H 0.079 0.921 41 H 0.124 0.876 42 H 0.080 0.920 43 H 0.096 0.904 44 H 0.076 0.924 45 H 0.096 0.904 46 H 0.053 0.947 47 H 0.030 0.970 48 H 0.199 0.801 49 H 0.067 0.933 50 H 0.106 0.894 51 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -21.244 5.541 31.080 38.053 hybrid contribution 0.281 -0.726 -1.665 1.838 sum -20.964 4.815 29.415 36.441 Atomic orbital electron populations 1.22544 0.89912 1.04644 1.06360 1.22398 0.97586 0.97210 0.81966 0.85730 1.86213 1.81449 1.37882 1.16417 1.20326 0.97690 0.92411 0.87574 1.22139 1.02701 0.92690 1.01620 1.22438 0.97071 1.02570 0.91773 1.23283 0.96578 0.90607 1.00643 1.67740 1.15980 1.08987 1.25779 1.22268 1.00149 1.01278 0.87112 1.20651 0.79253 0.85034 0.85159 1.90736 1.42133 1.25815 1.86676 1.48142 1.55079 1.25569 1.04433 1.22441 0.95327 0.82150 1.02917 1.21943 1.00836 0.98895 0.95272 1.21665 1.00017 0.95864 0.98151 1.21312 0.98463 0.96246 0.94502 0.92227 1.21628 0.99568 0.98281 0.95633 1.20817 0.95539 0.95650 0.85038 1.42773 1.58956 1.19219 1.19775 1.19055 1.20474 0.99839 0.97603 0.92705 1.25562 1.00391 1.02847 0.96898 1.69888 1.41472 1.40356 1.11644 0.85361 0.77727 0.80076 0.78331 1.19922 1.22231 1.17850 1.21606 0.98932 0.94926 0.84755 0.86792 0.92040 0.88773 0.81165 0.80523 0.80024 0.82758 0.86819 0.88175 0.92135 0.87646 0.92022 0.90366 0.92417 0.90410 0.94699 0.97042 0.80097 0.93279 0.89370 0.91491 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.23 8.77 71.98 0.63 -0.60 16 2 C 0.07 0.93 1.81 29.85 0.05 0.98 16 3 H 0.13 0.95 5.62 -2.39 -0.01 0.93 16 4 O -0.31 -6.37 9.35 -73.57 -0.69 -7.06 16 5 C 0.07 1.16 6.62 22.60 0.15 1.31 16 6 C -0.17 -1.59 8.35 22.56 0.19 -1.40 16 7 C -0.12 -0.89 10.11 22.35 0.23 -0.66 16 8 C 0.05 0.55 11.18 84.70 0.95 1.49 16 9 N -0.48 -9.03 10.36 -195.43 -2.02 -11.06 16 10 C 0.05 0.98 11.14 84.80 0.94 1.92 16 11 C 0.51 11.00 7.12 87.66 0.62 11.63 16 12 O -0.57 -18.92 15.92 15.95 0.25 -18.67 16 13 N -0.60 -9.77 2.98 -818.12 -2.44 -12.21 16 14 C 0.09 0.65 4.99 86.31 0.43 1.08 16 15 C -0.13 -1.27 6.08 30.67 0.19 -1.08 16 16 C -0.12 -1.97 4.96 30.62 0.15 -1.81 16 17 C -0.09 -1.84 2.34 -10.70 -0.03 -1.86 16 18 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 19 C -0.11 -3.11 4.80 30.59 0.15 -2.96 16 20 C 0.16 5.82 6.02 86.38 0.52 6.34 16 21 N -0.76 -36.17 5.41 -343.46 -1.86 -38.03 16 22 C -0.24 -13.92 10.47 84.03 0.88 -13.04 16 23 H 0.05 3.49 8.06 -2.91 -0.02 3.47 16 24 C -0.07 -3.92 5.50 84.86 0.47 -3.45 16 25 N -0.98 -63.71 13.97 21.65 0.30 -63.41 16 26 Si 0.96 45.92 27.74 68.60 1.90 47.83 16 27 H -0.27 -12.57 7.11 99.48 0.71 -11.87 16 28 H -0.30 -14.35 7.11 99.48 0.71 -13.64 16 29 H -0.25 -11.06 6.52 99.48 0.65 -10.42 16 30 C 0.12 2.43 5.71 86.37 0.49 2.92 16 31 H 0.11 0.16 5.43 -2.39 -0.01 0.15 16 32 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 33 H 0.09 0.34 6.98 -2.39 -0.02 0.33 16 34 H 0.17 0.46 5.61 -2.91 -0.02 0.45 16 35 H 0.18 -0.04 8.06 -2.91 -0.02 -0.07 16 36 H 0.18 1.08 8.06 -2.91 -0.02 1.06 16 37 H 0.16 3.05 8.06 -2.91 -0.02 3.03 16 38 H 0.11 0.12 4.70 -2.39 -0.01 0.11 16 39 H 0.10 0.36 8.14 -2.39 -0.02 0.34 16 40 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 41 H 0.11 0.54 8.14 -2.39 -0.02 0.52 16 42 H 0.06 1.24 6.51 -2.38 -0.02 1.23 16 43 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 44 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 45 H 0.08 1.96 8.14 -2.38 -0.02 1.94 16 46 H 0.04 1.28 6.54 -2.39 -0.02 1.27 16 47 H 0.01 0.46 8.14 -2.39 -0.02 0.44 16 48 H 0.37 16.47 5.53 -92.71 -0.51 15.96 16 49 H 0.26 15.90 8.31 -92.71 -0.77 15.13 16 50 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 51 H 0.07 1.75 7.00 -2.39 -0.02 1.73 16 Total: -1.00 -85.50 398.30 2.84 -82.66 By element: Atomic # 1 Polarization: 18.79 SS G_CDS: 0.37 Total: 19.16 kcal Atomic # 6 Polarization: -6.22 SS G_CDS: 7.02 Total: 0.79 kcal Atomic # 7 Polarization: -118.69 SS G_CDS: -6.02 Total: -124.71 kcal Atomic # 8 Polarization: -25.29 SS G_CDS: -0.43 Total: -25.73 kcal Atomic # 14 Polarization: 45.92 SS G_CDS: 1.90 Total: 47.83 kcal Total: -85.50 2.84 -82.66 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698697363.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.869 kcal (2) G-P(sol) polarization free energy of solvation -85.498 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.837 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.661 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.792 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds