Wall clock time and date at job start Wed Apr 1 2020 04:49:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09004 * 109.46804 * 2 1 4 4 O 1.42901 * 109.46964 * 240.00477 * 2 1 3 5 5 C 1.42901 * 114.00128 * 89.99928 * 4 2 1 6 6 C 1.50707 * 109.46935 * 179.97438 * 5 4 2 7 7 C 1.38649 * 120.78680 * 269.71606 * 6 5 4 8 8 C 1.38208 * 119.15596 * 179.79881 * 7 6 5 9 9 N 1.31861 * 120.76734 * 0.48456 * 8 7 6 10 10 C 1.31865 * 121.72874 * 359.74500 * 9 8 7 11 11 C 1.38210 * 120.76011 * 0.02562 * 10 9 8 12 12 C 1.50699 * 109.47107 * 120.00119 * 2 1 3 13 13 O 1.21282 * 119.99730 * 115.00867 * 12 2 1 14 14 N 1.34776 * 120.00164 * 294.99675 * 12 2 1 15 15 C 1.46493 * 120.00293 * 180.02562 * 14 12 2 16 16 C 1.53000 * 109.45807 * 299.98042 * 15 14 12 17 17 C 1.53041 * 109.46410 * 180.02562 * 15 14 12 18 18 C 1.53193 * 109.31105 * 301.34605 * 17 15 14 19 19 N 1.46928 * 108.77520 * 305.36495 * 18 17 15 20 20 C 1.36940 * 120.62959 * 233.58553 * 19 18 17 21 21 H 1.07996 * 119.99628 * 152.32038 * 20 19 18 22 22 C 1.38808 * 119.99786 * 332.32286 * 20 19 18 23 23 N 1.31614 * 120.00335 * 342.64662 * 22 20 19 24 24 Si 1.86804 * 119.99838 * 162.64095 * 22 20 19 25 25 H 1.48505 * 109.47053 * 179.97438 * 24 22 20 26 26 H 1.48493 * 109.47205 * 300.00434 * 24 22 20 27 27 H 1.48499 * 109.46877 * 60.00347 * 24 22 20 28 28 C 1.46923 * 118.74171 * 53.85993 * 19 18 17 29 29 C 1.53038 * 109.46048 * 59.93434 * 15 14 12 30 30 H 1.08996 * 109.46988 * 60.00329 * 1 2 3 31 31 H 1.09004 * 109.46804 * 180.02562 * 1 2 3 32 32 H 1.08991 * 109.46971 * 299.99814 * 1 2 3 33 33 H 1.08996 * 109.46955 * 299.99557 * 5 4 2 34 34 H 1.08997 * 109.47170 * 59.99575 * 5 4 2 35 35 H 1.08001 * 120.41982 * 0.02562 * 7 6 5 36 36 H 1.08002 * 119.61494 * 180.21062 * 8 7 6 37 37 H 1.07997 * 119.62484 * 179.97438 * 10 9 8 38 38 H 1.08001 * 120.41381 * 179.97438 * 11 10 9 39 39 H 0.97002 * 119.99717 * 0.02562 * 14 12 2 40 40 H 1.09003 * 109.47027 * 300.01962 * 16 15 14 41 41 H 1.08995 * 109.47550 * 60.02659 * 16 15 14 42 42 H 1.09005 * 109.47129 * 180.02562 * 16 15 14 43 43 H 1.08999 * 109.49799 * 181.39591 * 17 15 14 44 44 H 1.09000 * 109.52082 * 61.31128 * 17 15 14 45 45 H 1.08999 * 109.58803 * 185.57393 * 18 17 15 46 46 H 1.09008 * 109.58457 * 65.14824 * 18 17 15 47 47 H 0.97006 * 120.00347 * 180.02562 * 23 22 20 48 48 H 1.09000 * 109.59145 * 65.92479 * 28 19 18 49 49 H 1.08998 * 109.59312 * 186.35605 * 28 19 18 50 50 H 1.08994 * 109.50474 * 178.61000 * 29 15 14 51 51 H 1.09007 * 109.49914 * 298.67394 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0063 -0.6736 -1.1669 5 6 2.2001 0.1831 -2.2941 6 6 2.7014 -0.6281 -3.4611 7 6 4.0605 -0.8063 -3.6699 8 6 4.4829 -1.5601 -4.7486 9 7 3.6107 -2.0981 -5.5784 10 6 2.3113 -1.9456 -5.4135 11 6 1.8148 -1.2089 -4.3548 12 6 2.0324 -0.7104 1.2304 13 8 2.6531 -1.7466 1.1214 14 7 1.7920 -0.1942 2.4520 15 6 2.2808 -0.8845 3.6481 16 6 1.6707 -2.2861 3.7127 17 6 1.8752 -0.0943 4.8944 18 6 2.4590 1.3195 4.8101 19 7 3.9104 1.2204 4.6042 20 6 4.7794 1.8722 5.4380 21 1 5.7746 1.4822 5.5923 22 6 4.3811 3.0340 6.0847 23 7 3.3278 3.6973 5.6571 24 14 5.3400 3.6561 7.5623 25 1 4.7156 4.9052 8.0673 26 1 5.3240 2.6264 8.6320 27 1 6.7431 3.9316 7.1614 28 6 4.4115 0.4136 3.4832 29 6 3.8059 -0.9951 3.5855 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8899 33 1 1.2538 0.6547 -2.5588 34 1 2.9319 0.9515 -2.0450 35 1 4.7798 -0.3647 -2.9961 36 1 5.5397 -1.7065 -4.9162 37 1 1.6272 -2.4010 -6.1142 38 1 0.7495 -1.0873 -4.2253 39 1 1.2953 0.6344 2.5392 40 1 0.5843 -2.2078 3.7563 41 1 1.9591 -2.8493 2.8252 42 1 2.0339 -2.7998 4.6029 43 1 2.2599 -0.5943 5.7833 44 1 0.7882 -0.0364 4.9512 45 1 2.2572 1.8541 5.7383 46 1 2.0068 1.8522 3.9734 47 1 3.0497 4.5094 6.1088 48 1 4.1153 0.8738 2.5406 49 1 5.4983 0.3502 3.5356 50 1 4.1724 -1.4866 4.4866 51 1 4.0928 -1.5786 2.7106 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699773492.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:49:30 Heat of formation + Delta-G solvation = -22.202906 kcal Electronic energy + Delta-G solvation = -31359.357192 eV Core-core repulsion = 27259.547622 eV Total energy + Delta-G solvation = -4099.809570 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -40.49735 -40.19324 -38.38415 -36.95553 -34.40914 -33.72414 -32.41199 -31.45971 -31.27350 -30.24178 -29.85650 -27.43073 -27.13237 -24.49373 -24.01824 -23.71271 -22.33333 -22.24434 -21.22785 -20.27516 -18.70297 -17.70089 -17.24693 -16.79326 -16.58460 -16.50690 -15.85188 -15.39315 -14.89930 -14.83556 -14.62478 -14.16478 -14.03870 -13.92168 -13.82018 -13.48740 -13.34765 -13.15359 -13.09929 -12.92936 -12.59893 -12.36834 -12.17175 -11.84407 -11.77862 -11.65819 -11.42028 -11.30302 -11.19484 -10.95186 -10.73072 -10.40899 -10.33214 -10.10815 -9.98581 -9.90143 -9.74457 -9.71054 -9.61654 -9.39244 -9.01032 -8.64156 -8.48641 -6.69992 -5.83596 -3.24566 0.87420 0.89685 2.86510 2.95644 3.35746 3.41243 3.43274 3.56236 3.91812 4.21792 4.41916 4.45360 4.47173 4.69742 4.78806 4.81159 4.87076 4.94491 5.04396 5.11056 5.27044 5.33510 5.36040 5.40911 5.41424 5.50216 5.53127 5.54264 5.60292 5.69423 5.88588 5.98769 6.04307 6.05301 6.17762 6.27990 6.30340 6.41059 6.42935 6.50370 6.65094 6.68873 6.80962 6.83936 6.93999 7.07160 7.25655 7.53896 7.70716 7.75625 7.87665 8.41107 8.53279 9.17675 9.81160 10.38085 11.24929 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.015523 B = 0.002399 C = 0.002274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1803.331781 B =11669.257712 C =12307.640218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.068 3.932 3 H 0.087 0.913 4 O -0.348 6.348 5 C 0.097 3.903 6 C -0.041 4.041 7 C -0.148 4.148 8 C 0.096 3.904 9 N -0.484 5.484 10 C 0.093 3.907 11 C -0.152 4.152 12 C 0.517 3.483 13 O -0.521 6.521 14 N -0.707 5.707 15 C 0.186 3.814 16 C -0.161 4.161 17 C -0.146 4.146 18 C 0.172 3.828 19 N -0.591 5.591 20 C -0.250 4.250 21 H 0.065 0.935 22 C 0.002 3.998 23 N -0.905 5.905 24 Si 0.902 3.098 25 H -0.291 1.291 26 H -0.284 1.284 27 H -0.283 1.283 28 C 0.152 3.848 29 C -0.144 4.144 30 H 0.066 0.934 31 H 0.069 0.931 32 H 0.074 0.926 33 H 0.064 0.936 34 H 0.066 0.934 35 H 0.138 0.862 36 H 0.158 0.842 37 H 0.156 0.844 38 H 0.135 0.865 39 H 0.399 0.601 40 H 0.047 0.953 41 H 0.072 0.928 42 H 0.059 0.941 43 H 0.072 0.928 44 H 0.054 0.946 45 H 0.089 0.911 46 H 0.015 0.985 47 H 0.254 0.746 48 H 0.013 0.987 49 H 0.050 0.950 50 H 0.063 0.937 51 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.715 -6.797 -16.160 19.153 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.006 3.994 3 H 0.105 0.895 4 O -0.266 6.266 5 C 0.020 3.980 6 C -0.050 4.050 7 C -0.168 4.168 8 C -0.061 4.061 9 N -0.193 5.193 10 C -0.063 4.063 11 C -0.172 4.172 12 C 0.301 3.699 13 O -0.397 6.397 14 N -0.360 5.360 15 C 0.101 3.899 16 C -0.219 4.219 17 C -0.186 4.186 18 C 0.046 3.954 19 N -0.314 5.314 20 C -0.380 4.380 21 H 0.082 0.918 22 C -0.197 4.197 23 N -0.550 5.550 24 Si 0.732 3.268 25 H -0.217 1.217 26 H -0.210 1.210 27 H -0.209 1.209 28 C 0.025 3.975 29 C -0.183 4.183 30 H 0.085 0.915 31 H 0.088 0.912 32 H 0.093 0.907 33 H 0.082 0.918 34 H 0.084 0.916 35 H 0.156 0.844 36 H 0.175 0.825 37 H 0.174 0.826 38 H 0.153 0.847 39 H 0.234 0.766 40 H 0.067 0.933 41 H 0.091 0.909 42 H 0.078 0.922 43 H 0.090 0.910 44 H 0.073 0.927 45 H 0.108 0.892 46 H 0.033 0.967 47 H 0.064 0.936 48 H 0.031 0.969 49 H 0.069 0.931 50 H 0.082 0.918 51 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -6.970 -8.069 -16.866 19.954 hybrid contribution -0.204 1.667 1.604 2.322 sum -7.175 -6.402 -15.262 18.039 Atomic orbital electron populations 1.22218 0.93644 1.03669 1.03127 1.21986 0.95019 0.96665 0.85709 0.89472 1.88109 1.86647 1.33407 1.18426 1.21419 1.00136 0.91731 0.84690 1.19980 0.93686 0.96593 0.94704 1.22153 0.95955 0.99665 0.99009 1.22787 0.99732 0.93059 0.90488 1.67658 1.03390 1.19680 1.28613 1.22756 0.91988 0.95498 0.96097 1.22072 1.00959 0.98335 0.95837 1.20086 0.80064 0.85613 0.84088 1.90641 1.39480 1.23254 1.86318 1.46083 1.57248 1.27519 1.05158 1.20266 0.94373 0.91261 0.83958 1.22231 0.99842 0.96992 1.02833 1.22529 0.99422 1.00650 0.95953 1.20743 0.83296 0.90062 1.01284 1.44054 1.01676 1.55887 1.29745 1.19163 0.96549 1.02911 1.19328 0.91775 1.25006 0.98509 0.95532 1.00618 1.70002 1.27826 1.16947 1.40231 0.86375 0.79461 0.77808 0.83175 1.21671 1.21042 1.20925 1.20914 0.96675 0.89458 0.90413 1.22482 0.93913 0.99924 1.02025 0.91468 0.91159 0.90666 0.91785 0.91583 0.84396 0.82498 0.82644 0.84666 0.76575 0.93349 0.90923 0.92233 0.90973 0.92742 0.89238 0.96715 0.93643 0.96861 0.93117 0.91802 0.90921 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.56 9.48 37.16 0.35 -1.20 16 2 C 0.07 0.81 3.13 -27.88 -0.09 0.72 16 3 H 0.09 0.92 7.79 -51.93 -0.40 0.52 16 4 O -0.35 -4.58 9.51 -55.09 -0.52 -5.10 16 5 C 0.10 0.94 5.92 36.01 0.21 1.16 16 6 C -0.04 -0.42 5.55 -104.32 -0.58 -1.00 16 7 C -0.15 -1.50 9.82 -39.44 -0.39 -1.88 16 8 C 0.10 0.96 11.18 -17.55 -0.20 0.76 16 9 N -0.48 -5.39 10.36 -13.25 -0.14 -5.52 16 10 C 0.09 0.87 11.18 -17.55 -0.20 0.68 16 11 C -0.15 -1.38 9.82 -39.44 -0.39 -1.77 16 12 C 0.52 7.98 6.60 -10.99 -0.07 7.91 16 13 O -0.52 -9.86 12.73 -14.30 -0.18 -10.05 16 14 N -0.71 -10.62 4.05 -47.57 -0.19 -10.82 16 15 C 0.19 3.09 0.66 -131.78 -0.09 3.00 16 16 C -0.16 -2.43 8.40 37.16 0.31 -2.12 16 17 C -0.15 -2.56 4.96 -26.61 -0.13 -2.69 16 18 C 0.17 3.77 5.03 -3.71 -0.02 3.75 16 19 N -0.59 -14.23 2.99 -172.02 -0.51 -14.75 16 20 C -0.25 -6.70 9.58 -15.06 -0.14 -6.84 16 21 H 0.06 1.71 7.89 -52.49 -0.41 1.30 16 22 C 0.00 0.04 4.91 -17.43 -0.09 -0.04 16 23 N -0.91 -25.18 11.19 55.49 0.62 -24.56 16 24 Si 0.90 21.27 29.59 -169.99 -5.03 16.24 16 25 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 26 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 27 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 28 C 0.15 3.23 6.28 -3.46 -0.02 3.21 16 29 C -0.14 -2.68 4.69 -26.36 -0.12 -2.80 16 30 H 0.07 0.49 7.87 -51.93 -0.41 0.08 16 31 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.07 0.62 7.92 -51.93 -0.41 0.20 16 33 H 0.06 0.48 7.83 -51.93 -0.41 0.07 16 34 H 0.07 0.59 8.04 -51.93 -0.42 0.17 16 35 H 0.14 1.23 8.06 -52.49 -0.42 0.80 16 36 H 0.16 1.17 8.06 -52.49 -0.42 0.74 16 37 H 0.16 1.00 8.06 -52.49 -0.42 0.58 16 38 H 0.14 0.92 8.06 -52.49 -0.42 0.50 16 39 H 0.40 5.49 7.05 -40.82 -0.29 5.20 16 40 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 41 H 0.07 1.21 6.17 -51.93 -0.32 0.89 16 42 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 43 H 0.07 1.32 8.14 -51.93 -0.42 0.89 16 44 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 45 H 0.09 2.24 6.04 -51.93 -0.31 1.93 16 46 H 0.01 0.33 6.94 -51.92 -0.36 -0.03 16 47 H 0.25 6.87 8.31 -40.82 -0.34 6.53 16 48 H 0.01 0.29 7.74 -51.93 -0.40 -0.11 16 49 H 0.05 1.09 7.93 -51.93 -0.41 0.68 16 50 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 51 H 0.07 1.40 6.20 -51.93 -0.32 1.08 16 LS Contribution 403.72 15.07 6.08 6.08 Total: -1.00 -32.70 403.72 -9.76 -42.45 By element: Atomic # 1 Polarization: 13.43 SS G_CDS: -8.24 Total: 5.19 kcal Atomic # 6 Polarization: 2.47 SS G_CDS: -1.64 Total: 0.83 kcal Atomic # 7 Polarization: -55.42 SS G_CDS: -0.22 Total: -55.65 kcal Atomic # 8 Polarization: -14.44 SS G_CDS: -0.71 Total: -15.15 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.03 Total: 16.24 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -32.70 -9.76 -42.45 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699773492.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.252 kcal (2) G-P(sol) polarization free energy of solvation -32.696 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.759 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.455 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.203 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds