Wall clock time and date at job start Wed Apr 1 2020 04:49:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09004 * 109.46804 * 2 1 4 4 O 1.42901 * 109.46964 * 240.00477 * 2 1 3 5 5 C 1.42901 * 114.00128 * 89.99928 * 4 2 1 6 6 C 1.50707 * 109.46935 * 179.97438 * 5 4 2 7 7 C 1.38649 * 120.78680 * 269.71606 * 6 5 4 8 8 C 1.38208 * 119.15596 * 179.79881 * 7 6 5 9 9 N 1.31861 * 120.76734 * 0.48456 * 8 7 6 10 10 C 1.31865 * 121.72874 * 359.74500 * 9 8 7 11 11 C 1.38210 * 120.76011 * 0.02562 * 10 9 8 12 12 C 1.50699 * 109.47107 * 120.00119 * 2 1 3 13 13 O 1.21282 * 119.99730 * 115.00867 * 12 2 1 14 14 N 1.34776 * 120.00164 * 294.99675 * 12 2 1 15 15 C 1.46493 * 120.00293 * 180.02562 * 14 12 2 16 16 C 1.53000 * 109.45807 * 299.98042 * 15 14 12 17 17 C 1.53041 * 109.46410 * 180.02562 * 15 14 12 18 18 C 1.53193 * 109.31105 * 301.34605 * 17 15 14 19 19 N 1.46928 * 108.77520 * 305.36495 * 18 17 15 20 20 C 1.36940 * 120.62959 * 233.58553 * 19 18 17 21 21 H 1.07996 * 119.99628 * 152.32038 * 20 19 18 22 22 C 1.38808 * 119.99786 * 332.32286 * 20 19 18 23 23 N 1.31614 * 120.00335 * 342.64662 * 22 20 19 24 24 Si 1.86804 * 119.99838 * 162.64095 * 22 20 19 25 25 H 1.48505 * 109.47053 * 179.97438 * 24 22 20 26 26 H 1.48493 * 109.47205 * 300.00434 * 24 22 20 27 27 H 1.48499 * 109.46877 * 60.00347 * 24 22 20 28 28 C 1.46923 * 118.74171 * 53.85993 * 19 18 17 29 29 C 1.53038 * 109.46048 * 59.93434 * 15 14 12 30 30 H 1.08996 * 109.46988 * 60.00329 * 1 2 3 31 31 H 1.09004 * 109.46804 * 180.02562 * 1 2 3 32 32 H 1.08991 * 109.46971 * 299.99814 * 1 2 3 33 33 H 1.08996 * 109.46955 * 299.99557 * 5 4 2 34 34 H 1.08997 * 109.47170 * 59.99575 * 5 4 2 35 35 H 1.08001 * 120.41982 * 0.02562 * 7 6 5 36 36 H 1.08002 * 119.61494 * 180.21062 * 8 7 6 37 37 H 1.07997 * 119.62484 * 179.97438 * 10 9 8 38 38 H 1.08001 * 120.41381 * 179.97438 * 11 10 9 39 39 H 0.97002 * 119.99717 * 0.02562 * 14 12 2 40 40 H 1.09003 * 109.47027 * 300.01962 * 16 15 14 41 41 H 1.08995 * 109.47550 * 60.02659 * 16 15 14 42 42 H 1.09005 * 109.47129 * 180.02562 * 16 15 14 43 43 H 1.08999 * 109.49799 * 181.39591 * 17 15 14 44 44 H 1.09000 * 109.52082 * 61.31128 * 17 15 14 45 45 H 1.08999 * 109.58803 * 185.57393 * 18 17 15 46 46 H 1.09008 * 109.58457 * 65.14824 * 18 17 15 47 47 H 0.97006 * 120.00347 * 180.02562 * 23 22 20 48 48 H 1.09000 * 109.59145 * 65.92479 * 28 19 18 49 49 H 1.08998 * 109.59312 * 186.35605 * 28 19 18 50 50 H 1.08994 * 109.50474 * 178.61000 * 29 15 14 51 51 H 1.09007 * 109.49914 * 298.67394 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0063 -0.6736 -1.1669 5 6 2.2001 0.1831 -2.2941 6 6 2.7014 -0.6281 -3.4611 7 6 4.0605 -0.8063 -3.6699 8 6 4.4829 -1.5601 -4.7486 9 7 3.6107 -2.0981 -5.5784 10 6 2.3113 -1.9456 -5.4135 11 6 1.8148 -1.2089 -4.3548 12 6 2.0324 -0.7104 1.2304 13 8 2.6531 -1.7466 1.1214 14 7 1.7920 -0.1942 2.4520 15 6 2.2808 -0.8845 3.6481 16 6 1.6707 -2.2861 3.7127 17 6 1.8752 -0.0943 4.8944 18 6 2.4590 1.3195 4.8101 19 7 3.9104 1.2204 4.6042 20 6 4.7794 1.8722 5.4380 21 1 5.7746 1.4822 5.5923 22 6 4.3811 3.0340 6.0847 23 7 3.3278 3.6973 5.6571 24 14 5.3400 3.6561 7.5623 25 1 4.7156 4.9052 8.0673 26 1 5.3240 2.6264 8.6320 27 1 6.7431 3.9316 7.1614 28 6 4.4115 0.4136 3.4832 29 6 3.8059 -0.9951 3.5855 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8899 33 1 1.2538 0.6547 -2.5588 34 1 2.9319 0.9515 -2.0450 35 1 4.7798 -0.3647 -2.9961 36 1 5.5397 -1.7065 -4.9162 37 1 1.6272 -2.4010 -6.1142 38 1 0.7495 -1.0873 -4.2253 39 1 1.2953 0.6344 2.5392 40 1 0.5843 -2.2078 3.7563 41 1 1.9591 -2.8493 2.8252 42 1 2.0339 -2.7998 4.6029 43 1 2.2599 -0.5943 5.7833 44 1 0.7882 -0.0364 4.9512 45 1 2.2572 1.8541 5.7383 46 1 2.0068 1.8522 3.9734 47 1 3.0497 4.5094 6.1088 48 1 4.1153 0.8738 2.5406 49 1 5.4983 0.3502 3.5356 50 1 4.1724 -1.4866 4.4866 51 1 4.0928 -1.5786 2.7106 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699773492.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:49:29 Heat of formation + Delta-G solvation = -41.508788 kcal Electronic energy + Delta-G solvation = -31360.194358 eV Core-core repulsion = 27259.547622 eV Total energy + Delta-G solvation = -4100.646736 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -41.57911 -41.09965 -39.50996 -38.26312 -36.06864 -34.55758 -33.77330 -32.83445 -32.15625 -31.63856 -31.19559 -29.07057 -27.87918 -25.95934 -25.32051 -24.42231 -23.95178 -23.00021 -22.71307 -21.61853 -20.14953 -18.92036 -18.52910 -17.92055 -17.45638 -17.40380 -16.83517 -16.56630 -16.36359 -16.14556 -15.78922 -15.47122 -15.43124 -15.14223 -14.80737 -14.79847 -14.58447 -14.50943 -14.18715 -14.03530 -13.67871 -13.38927 -13.25947 -13.11759 -13.02162 -12.94841 -12.82416 -12.61688 -12.52063 -12.48647 -12.24685 -12.19352 -11.98682 -11.76754 -11.33268 -11.30292 -10.91194 -10.75911 -10.52107 -10.48109 -10.25488 -10.09718 -9.93344 -8.65053 -7.87202 -5.30640 0.12857 0.18915 1.47673 1.49318 1.55944 1.68707 1.94855 2.51744 2.71975 3.09191 3.27454 3.56100 3.59794 3.71330 3.75150 3.76749 3.91345 3.96892 4.06595 4.09260 4.11073 4.16206 4.19417 4.38743 4.42023 4.48326 4.62129 4.68671 4.71873 4.74388 4.80352 4.82229 4.87647 4.88586 4.92368 4.97836 4.98354 5.14812 5.19974 5.22021 5.28724 5.34325 5.36374 5.49995 5.64721 5.69292 5.74399 5.78257 6.01393 6.40226 6.68874 6.98799 7.17079 7.34509 7.86971 8.38695 9.18240 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.015523 B = 0.002399 C = 0.002274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1803.331781 B =11669.257712 C =12307.640218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.071 3.929 3 H 0.102 0.898 4 O -0.375 6.375 5 C 0.095 3.905 6 C -0.058 4.058 7 C -0.162 4.162 8 C 0.084 3.916 9 N -0.509 5.509 10 C 0.085 3.915 11 C -0.152 4.152 12 C 0.513 3.487 13 O -0.560 6.560 14 N -0.703 5.703 15 C 0.189 3.811 16 C -0.151 4.151 17 C -0.131 4.131 18 C 0.178 3.822 19 N -0.605 5.605 20 C -0.265 4.265 21 H 0.057 0.943 22 C -0.043 4.043 23 N -0.927 5.927 24 Si 0.962 3.038 25 H -0.291 1.291 26 H -0.280 1.280 27 H -0.281 1.281 28 C 0.155 3.845 29 C -0.132 4.132 30 H 0.091 0.909 31 H 0.060 0.940 32 H 0.086 0.914 33 H 0.091 0.909 34 H 0.069 0.931 35 H 0.142 0.858 36 H 0.174 0.826 37 H 0.182 0.818 38 H 0.160 0.840 39 H 0.407 0.593 40 H 0.067 0.933 41 H 0.056 0.944 42 H 0.067 0.933 43 H 0.066 0.934 44 H 0.085 0.915 45 H 0.057 0.943 46 H 0.012 0.988 47 H 0.251 0.749 48 H 0.009 0.991 49 H 0.038 0.962 50 H 0.060 0.940 51 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.380 -6.826 -16.519 20.186 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.010 3.990 3 H 0.119 0.881 4 O -0.294 6.294 5 C 0.019 3.981 6 C -0.066 4.066 7 C -0.182 4.182 8 C -0.072 4.072 9 N -0.219 5.219 10 C -0.071 4.071 11 C -0.171 4.171 12 C 0.299 3.701 13 O -0.439 6.439 14 N -0.356 5.356 15 C 0.104 3.896 16 C -0.209 4.209 17 C -0.171 4.171 18 C 0.052 3.948 19 N -0.329 5.329 20 C -0.395 4.395 21 H 0.075 0.925 22 C -0.239 4.239 23 N -0.573 5.573 24 Si 0.790 3.210 25 H -0.217 1.217 26 H -0.206 1.206 27 H -0.207 1.207 28 C 0.029 3.971 29 C -0.172 4.172 30 H 0.110 0.890 31 H 0.079 0.921 32 H 0.105 0.895 33 H 0.110 0.890 34 H 0.087 0.913 35 H 0.160 0.840 36 H 0.191 0.809 37 H 0.199 0.801 38 H 0.178 0.822 39 H 0.243 0.757 40 H 0.086 0.914 41 H 0.075 0.925 42 H 0.086 0.914 43 H 0.085 0.915 44 H 0.103 0.897 45 H 0.076 0.924 46 H 0.030 0.970 47 H 0.060 0.940 48 H 0.027 0.973 49 H 0.057 0.943 50 H 0.078 0.922 51 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -8.647 -8.097 -17.237 20.915 hybrid contribution 0.355 1.673 1.654 2.379 sum -8.292 -6.423 -15.583 18.784 Atomic orbital electron populations 1.22201 0.91160 1.03612 1.04957 1.22023 0.96742 0.96363 0.83907 0.88054 1.88067 1.87044 1.34958 1.19340 1.21585 1.01656 0.91320 0.83528 1.20234 0.93978 0.97135 0.95293 1.22325 0.96468 1.00069 0.99335 1.23101 1.00628 0.92998 0.90439 1.67688 1.04402 1.20508 1.29338 1.23253 0.91869 0.95331 0.96673 1.22358 1.02090 0.97500 0.95186 1.20769 0.79136 0.85192 0.84998 1.90624 1.41228 1.25106 1.86906 1.46017 1.57054 1.27659 1.04847 1.20143 0.92876 0.92351 0.84245 1.22113 1.00902 0.95400 1.02462 1.22335 1.00935 0.97600 0.96181 1.20624 0.82361 0.92322 0.99446 1.44267 1.02405 1.56002 1.30227 1.19392 0.96905 1.03251 1.19999 0.92482 1.25649 0.99637 0.95797 1.02792 1.70122 1.28983 1.17128 1.41069 0.85437 0.78232 0.77081 0.80236 1.21736 1.20638 1.20661 1.20906 0.96177 0.90575 0.89415 1.22325 0.95696 0.97703 1.01476 0.89022 0.92113 0.89474 0.89049 0.91262 0.84006 0.80874 0.80105 0.82232 0.75659 0.91426 0.92456 0.91439 0.91542 0.89704 0.92444 0.96983 0.93974 0.97273 0.94297 0.92177 0.91538 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.51 9.48 71.98 0.68 -1.83 16 2 C 0.07 1.56 3.13 29.85 0.09 1.66 16 3 H 0.10 1.93 7.79 -2.38 -0.02 1.91 16 4 O -0.38 -9.38 9.51 -129.99 -1.24 -10.61 16 5 C 0.09 1.69 5.92 71.24 0.42 2.11 16 6 C -0.06 -1.13 5.55 -19.67 -0.11 -1.24 16 7 C -0.16 -3.26 9.82 22.36 0.22 -3.04 16 8 C 0.08 1.68 11.18 84.68 0.95 2.63 16 9 N -0.51 -11.07 10.36 -195.85 -2.03 -13.10 16 10 C 0.09 1.48 11.18 84.68 0.95 2.43 16 11 C -0.15 -2.49 9.82 22.36 0.22 -2.27 16 12 C 0.51 15.29 6.60 87.66 0.58 15.87 16 13 O -0.56 -21.09 12.73 15.95 0.20 -20.88 16 14 N -0.70 -20.07 4.05 -422.82 -1.71 -21.79 16 15 C 0.19 6.02 0.66 3.63 0.00 6.02 16 16 C -0.15 -4.27 8.40 71.98 0.60 -3.66 16 17 C -0.13 -4.39 4.96 30.67 0.15 -4.24 16 18 C 0.18 7.73 5.03 86.36 0.43 8.17 16 19 N -0.61 -29.37 2.99 -698.16 -2.09 -31.46 16 20 C -0.27 -14.37 9.58 84.03 0.81 -13.57 16 21 H 0.06 3.10 7.89 -2.91 -0.02 3.08 16 22 C -0.04 -2.31 4.91 84.86 0.42 -1.90 16 23 N -0.93 -51.89 11.19 21.65 0.24 -51.65 16 24 Si 0.96 43.87 29.59 68.60 2.03 45.90 16 25 H -0.29 -13.23 7.11 99.48 0.71 -12.52 16 26 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 27 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 28 C 0.16 6.67 6.28 86.53 0.54 7.21 16 29 C -0.13 -4.91 4.69 30.83 0.14 -4.77 16 30 H 0.09 0.99 7.87 -2.39 -0.02 0.97 16 31 H 0.06 1.08 8.14 -2.38 -0.02 1.06 16 32 H 0.09 1.14 7.92 -2.39 -0.02 1.12 16 33 H 0.09 1.09 7.83 -2.39 -0.02 1.07 16 34 H 0.07 1.16 8.04 -2.39 -0.02 1.14 16 35 H 0.14 2.58 8.06 -2.91 -0.02 2.55 16 36 H 0.17 2.58 8.06 -2.91 -0.02 2.56 16 37 H 0.18 1.98 8.06 -2.91 -0.02 1.96 16 38 H 0.16 1.72 8.06 -2.91 -0.02 1.70 16 39 H 0.41 10.39 7.05 -92.71 -0.65 9.74 16 40 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 41 H 0.06 1.84 6.17 -2.39 -0.01 1.83 16 42 H 0.07 1.79 8.14 -2.38 -0.02 1.77 16 43 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 44 H 0.08 2.35 8.14 -2.39 -0.02 2.33 16 45 H 0.06 2.89 6.04 -2.39 -0.01 2.87 16 46 H 0.01 0.53 6.94 -2.38 -0.02 0.51 16 47 H 0.25 13.66 8.31 -92.70 -0.77 12.88 16 48 H 0.01 0.41 7.74 -2.39 -0.02 0.39 16 49 H 0.04 1.72 7.93 -2.39 -0.02 1.70 16 50 H 0.06 2.26 8.14 -2.39 -0.02 2.24 16 51 H 0.07 2.58 6.20 -2.38 -0.01 2.57 16 Total: -1.00 -71.13 403.72 2.78 -68.34 By element: Atomic # 1 Polarization: 25.40 SS G_CDS: 0.27 Total: 25.67 kcal Atomic # 6 Polarization: 2.47 SS G_CDS: 7.10 Total: 9.58 kcal Atomic # 7 Polarization: -112.41 SS G_CDS: -5.59 Total: -118.00 kcal Atomic # 8 Polarization: -30.46 SS G_CDS: -1.03 Total: -31.50 kcal Atomic # 14 Polarization: 43.87 SS G_CDS: 2.03 Total: 45.90 kcal Total: -71.13 2.78 -68.34 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699773492.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.836 kcal (2) G-P(sol) polarization free energy of solvation -71.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.293 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.784 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.344 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.509 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds