Wall clock time and date at job start Wed Apr 1 2020 04:49:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09000 * 109.46725 * 2 1 4 4 O 1.42899 * 109.46934 * 120.00103 * 2 1 3 5 5 C 1.42912 * 113.99745 * 269.99726 * 4 2 1 6 6 C 1.50701 * 109.46925 * 180.02562 * 5 4 2 7 7 C 1.38653 * 120.79030 * 269.72164 * 6 5 4 8 8 C 1.38198 * 119.16179 * 179.79907 * 7 6 5 9 9 N 1.31872 * 120.76262 * 0.48504 * 8 7 6 10 10 C 1.31868 * 121.72836 * 359.74373 * 9 8 7 11 11 C 1.38199 * 120.76275 * 0.02562 * 10 9 8 12 12 C 1.50698 * 109.47009 * 240.00249 * 2 1 3 13 13 O 1.21285 * 119.99582 * 245.00120 * 12 2 1 14 14 N 1.34766 * 120.00303 * 64.99537 * 12 2 1 15 15 C 1.46499 * 120.00144 * 180.27246 * 14 12 2 16 16 C 1.53004 * 109.45703 * 59.75700 * 15 14 12 17 17 C 1.53044 * 109.46301 * 299.80206 * 15 14 12 18 18 C 1.53194 * 109.30873 * 301.33704 * 17 15 14 19 19 N 1.46920 * 108.77730 * 305.36784 * 18 17 15 20 20 C 1.36943 * 120.62920 * 233.62718 * 19 18 17 21 21 H 1.07996 * 119.99351 * 27.66216 * 20 19 18 22 22 C 1.38808 * 120.00072 * 207.66100 * 20 19 18 23 23 N 1.31621 * 120.00069 * 17.37388 * 22 20 19 24 24 Si 1.86798 * 120.00185 * 197.37499 * 22 20 19 25 25 H 1.48504 * 109.46780 * 359.97438 * 24 22 20 26 26 H 1.48497 * 109.47386 * 119.99730 * 24 22 20 27 27 H 1.48499 * 109.47277 * 240.00214 * 24 22 20 28 28 C 1.46932 * 118.74097 * 53.60926 * 19 18 17 29 29 C 1.53041 * 109.46161 * 179.72692 * 15 14 12 30 30 H 1.08993 * 109.47085 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.46596 * 300.00004 * 1 2 3 32 32 H 1.09002 * 109.46825 * 59.99581 * 1 2 3 33 33 H 1.08998 * 109.46751 * 300.00032 * 5 4 2 34 34 H 1.09002 * 109.46711 * 60.00307 * 5 4 2 35 35 H 1.08001 * 120.41851 * 0.02562 * 7 6 5 36 36 H 1.07998 * 119.62029 * 180.20619 * 8 7 6 37 37 H 1.08000 * 119.61840 * 179.97438 * 10 9 8 38 38 H 1.08004 * 120.41838 * 180.02562 * 11 10 9 39 39 H 0.96998 * 120.00468 * 0.02562 * 14 12 2 40 40 H 1.08999 * 109.47006 * 60.00283 * 16 15 14 41 41 H 1.09005 * 109.47078 * 179.97438 * 16 15 14 42 42 H 1.09000 * 109.47552 * 300.00075 * 16 15 14 43 43 H 1.08997 * 109.49815 * 61.28870 * 17 15 14 44 44 H 1.09004 * 109.49711 * 181.39002 * 17 15 14 45 45 H 1.08996 * 109.58500 * 185.57712 * 18 17 15 46 46 H 1.09001 * 109.69906 * 65.22393 * 18 17 15 47 47 H 0.97003 * 120.00270 * 179.97438 * 23 22 20 48 48 H 1.08999 * 109.58450 * 186.60446 * 28 19 18 49 49 H 1.09000 * 109.70066 * 66.24896 * 28 19 18 50 50 H 1.09005 * 109.49796 * 178.60901 * 29 15 14 51 51 H 1.08994 * 109.49816 * 298.67348 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0064 -0.6737 1.1668 5 6 2.2001 0.1830 2.2941 6 6 2.7014 -0.6281 3.4611 7 6 1.8149 -1.2043 4.3581 8 6 2.3113 -1.9449 5.4139 9 7 3.6107 -2.0982 5.5783 10 6 4.4829 -1.5610 4.7479 11 6 4.0604 -0.8112 3.6666 12 6 2.0324 -0.7104 -1.2305 13 8 2.6530 -1.7467 -1.1215 14 7 1.7919 -0.1942 -2.4519 15 6 2.2750 -0.8879 -3.6484 16 6 1.6634 -2.2892 -3.7070 17 6 3.8003 -0.9997 -3.5920 18 6 4.4080 0.4035 -3.4988 19 7 3.9031 1.2127 -4.6163 20 6 4.7695 1.8608 -5.4558 21 1 5.7635 1.4690 -5.6130 22 6 4.3701 3.0211 -6.1044 23 7 3.3196 3.6874 -5.6741 24 14 5.3232 3.6372 -7.5881 25 1 6.4539 2.7158 -7.8674 26 1 4.4232 3.6889 -8.7681 27 1 5.8508 4.9967 -7.3080 28 6 2.4509 1.3131 -4.8164 29 6 1.8652 -0.1002 -4.8949 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3632 0.5139 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 2.9320 0.9513 2.0450 34 1 1.2538 0.6547 2.5588 35 1 0.7497 -1.0789 4.2311 36 1 1.6273 -2.3997 6.1151 37 1 5.5397 -1.7080 4.9152 38 1 4.7796 -0.3741 2.9897 39 1 1.2958 0.6347 -2.5392 40 1 0.5770 -2.2100 -3.7466 41 1 2.0224 -2.8054 -4.5974 42 1 1.9547 -2.8502 -2.8191 43 1 4.0904 -1.5807 -2.7166 44 1 4.1625 -1.4938 -4.4936 45 1 5.4942 0.3359 -3.5581 46 1 4.1216 0.8659 -2.5542 47 1 3.0407 4.4985 -6.1272 48 1 2.2460 1.8457 -5.7451 49 1 2.0011 1.8492 -3.9808 50 1 2.2456 -0.6028 -5.7843 51 1 0.7781 -0.0417 -4.9471 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699773493.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:49:34 Heat of formation + Delta-G solvation = -22.334514 kcal Electronic energy + Delta-G solvation = -31356.258742 eV Core-core repulsion = 27256.443464 eV Total energy + Delta-G solvation = -4099.815277 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -40.49870 -40.19711 -38.38955 -36.96243 -34.41137 -33.72455 -32.41691 -31.46164 -31.28067 -30.24744 -29.87304 -27.44277 -27.13376 -24.49558 -24.02056 -23.71307 -22.33140 -22.24511 -21.23566 -20.27783 -18.70266 -17.70248 -17.25008 -16.79566 -16.58449 -16.50918 -15.85281 -15.39577 -14.91013 -14.83750 -14.62547 -14.16403 -14.03831 -13.92335 -13.81937 -13.48603 -13.35315 -13.15848 -13.10805 -12.93125 -12.60319 -12.37324 -12.17390 -11.84614 -11.78074 -11.66380 -11.41992 -11.30835 -11.19887 -10.96018 -10.76077 -10.38669 -10.30609 -10.11021 -9.98417 -9.90150 -9.74583 -9.71211 -9.61043 -9.39398 -9.01169 -8.64503 -8.49513 -6.70443 -5.83944 -3.24644 0.87220 0.89672 2.86365 2.95444 3.33767 3.42330 3.44727 3.56099 3.91671 4.21698 4.41791 4.45180 4.46927 4.69574 4.78674 4.81000 4.87001 4.94345 5.04252 5.10936 5.26735 5.33331 5.35930 5.40684 5.41234 5.49753 5.53041 5.54015 5.60063 5.69340 5.88468 5.98504 6.03949 6.05187 6.17257 6.27541 6.30890 6.41122 6.42834 6.50136 6.64722 6.68916 6.80858 6.83707 6.93895 7.06894 7.25445 7.54008 7.70597 7.76041 7.87496 8.40716 8.53080 9.17432 9.80955 10.37670 11.24720 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.015583 B = 0.002394 C = 0.002272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1796.376224 B =11691.149856 C =12322.242131 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.068 3.932 3 H 0.087 0.913 4 O -0.348 6.348 5 C 0.097 3.903 6 C -0.041 4.041 7 C -0.152 4.152 8 C 0.093 3.907 9 N -0.484 5.484 10 C 0.096 3.904 11 C -0.148 4.148 12 C 0.517 3.483 13 O -0.521 6.521 14 N -0.707 5.707 15 C 0.186 3.814 16 C -0.161 4.161 17 C -0.143 4.143 18 C 0.152 3.848 19 N -0.591 5.591 20 C -0.248 4.248 21 H 0.065 0.935 22 C 0.001 3.999 23 N -0.905 5.905 24 Si 0.901 3.099 25 H -0.278 1.278 26 H -0.289 1.289 27 H -0.291 1.291 28 C 0.172 3.828 29 C -0.146 4.146 30 H 0.069 0.931 31 H 0.066 0.934 32 H 0.074 0.926 33 H 0.066 0.934 34 H 0.064 0.936 35 H 0.135 0.865 36 H 0.156 0.844 37 H 0.158 0.842 38 H 0.138 0.862 39 H 0.399 0.601 40 H 0.047 0.953 41 H 0.059 0.941 42 H 0.072 0.928 43 H 0.073 0.927 44 H 0.063 0.937 45 H 0.050 0.950 46 H 0.013 0.987 47 H 0.252 0.748 48 H 0.089 0.911 49 H 0.015 0.985 50 H 0.072 0.928 51 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.680 -6.847 16.221 19.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.006 3.994 3 H 0.105 0.895 4 O -0.266 6.266 5 C 0.020 3.980 6 C -0.050 4.050 7 C -0.172 4.172 8 C -0.063 4.063 9 N -0.193 5.193 10 C -0.061 4.061 11 C -0.168 4.168 12 C 0.301 3.699 13 O -0.397 6.397 14 N -0.360 5.360 15 C 0.101 3.899 16 C -0.219 4.219 17 C -0.183 4.183 18 C 0.025 3.975 19 N -0.314 5.314 20 C -0.377 4.377 21 H 0.083 0.917 22 C -0.198 4.198 23 N -0.550 5.550 24 Si 0.731 3.269 25 H -0.203 1.203 26 H -0.216 1.216 27 H -0.218 1.218 28 C 0.046 3.954 29 C -0.186 4.186 30 H 0.088 0.912 31 H 0.085 0.915 32 H 0.093 0.907 33 H 0.084 0.916 34 H 0.082 0.918 35 H 0.153 0.847 36 H 0.174 0.826 37 H 0.175 0.825 38 H 0.156 0.844 39 H 0.234 0.766 40 H 0.066 0.934 41 H 0.078 0.922 42 H 0.091 0.909 43 H 0.091 0.909 44 H 0.082 0.918 45 H 0.069 0.931 46 H 0.031 0.969 47 H 0.062 0.938 48 H 0.108 0.892 49 H 0.033 0.967 50 H 0.090 0.910 51 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -6.925 -8.131 16.928 20.015 hybrid contribution -0.231 1.678 -1.608 2.336 sum -7.156 -6.453 15.319 18.098 Atomic orbital electron populations 1.22220 0.93641 1.03669 1.03130 1.21985 0.95019 0.96667 0.85709 0.89472 1.88112 1.86647 1.33403 1.18428 1.21422 1.00134 0.91730 0.84689 1.19982 0.93687 0.96603 0.94693 1.22071 1.00951 0.98349 0.95838 1.22754 0.91988 0.95473 0.96117 1.67664 1.03387 1.19676 1.28615 1.22787 0.99732 0.93080 0.90468 1.22151 0.95961 0.99654 0.99009 1.20086 0.80068 0.85611 0.84090 1.90643 1.39484 1.23256 1.86321 1.46080 1.57390 1.27390 1.05141 1.20270 0.94413 0.91228 0.83953 1.22233 0.99837 0.96987 1.02851 1.22397 0.93933 0.99932 1.02043 1.20816 0.96663 0.89503 0.90481 1.44058 1.01638 1.55869 1.29829 1.19248 0.96697 1.02986 1.18812 0.91682 1.25007 0.98547 0.95559 1.00642 1.70024 1.27986 1.16911 1.40068 0.86241 0.79361 0.78346 0.82954 1.20275 1.21580 1.21792 1.20736 0.83278 0.90052 1.01340 1.22529 0.99414 1.00662 0.95949 0.91160 0.91464 0.90666 0.91581 0.91783 0.84667 0.82645 0.82496 0.84397 0.76571 0.93353 0.92229 0.90901 0.90897 0.91806 0.93147 0.96885 0.93761 0.89240 0.96704 0.90972 0.92738 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.55 9.48 37.16 0.35 -1.20 16 2 C 0.07 0.81 3.13 -27.88 -0.09 0.72 16 3 H 0.09 0.92 7.79 -51.93 -0.40 0.52 16 4 O -0.35 -4.57 9.51 -55.09 -0.52 -5.10 16 5 C 0.10 0.94 5.92 36.01 0.21 1.16 16 6 C -0.04 -0.42 5.55 -104.32 -0.58 -1.00 16 7 C -0.15 -1.38 9.82 -39.44 -0.39 -1.77 16 8 C 0.09 0.87 11.18 -17.55 -0.20 0.68 16 9 N -0.48 -5.38 10.36 -13.26 -0.14 -5.52 16 10 C 0.10 0.96 11.18 -17.55 -0.20 0.76 16 11 C -0.15 -1.50 9.82 -39.44 -0.39 -1.88 16 12 C 0.52 7.97 6.60 -10.99 -0.07 7.90 16 13 O -0.52 -9.85 12.73 -14.31 -0.18 -10.04 16 14 N -0.71 -10.61 4.07 -47.57 -0.19 -10.81 16 15 C 0.19 3.08 0.66 -131.77 -0.09 3.00 16 16 C -0.16 -2.43 8.40 37.16 0.31 -2.12 16 17 C -0.14 -2.67 4.67 -26.61 -0.12 -2.79 16 18 C 0.15 3.23 6.25 -3.71 -0.02 3.20 16 19 N -0.59 -14.23 2.99 -172.32 -0.52 -14.74 16 20 C -0.25 -6.64 9.58 -15.06 -0.14 -6.79 16 21 H 0.07 1.75 7.89 -52.49 -0.41 1.33 16 22 C 0.00 0.01 4.91 -17.43 -0.09 -0.07 16 23 N -0.90 -25.18 11.19 55.49 0.62 -24.56 16 24 Si 0.90 21.27 29.59 -169.99 -5.03 16.24 16 25 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 26 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 27 H -0.29 -6.95 7.11 56.52 0.40 -6.54 16 28 C 0.17 3.76 5.04 -3.71 -0.02 3.75 16 29 C -0.15 -2.56 4.96 -26.61 -0.13 -2.69 16 30 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.07 0.49 7.87 -51.93 -0.41 0.08 16 32 H 0.07 0.61 7.93 -51.93 -0.41 0.20 16 33 H 0.07 0.59 8.04 -51.93 -0.42 0.17 16 34 H 0.06 0.48 7.83 -51.93 -0.41 0.07 16 35 H 0.14 0.92 8.06 -52.49 -0.42 0.49 16 36 H 0.16 1.00 8.06 -52.49 -0.42 0.58 16 37 H 0.16 1.17 8.06 -52.49 -0.42 0.74 16 38 H 0.14 1.23 8.06 -52.48 -0.42 0.80 16 39 H 0.40 5.48 7.05 -40.82 -0.29 5.19 16 40 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 41 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 42 H 0.07 1.21 6.16 -51.93 -0.32 0.89 16 43 H 0.07 1.40 6.21 -51.93 -0.32 1.08 16 44 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 45 H 0.05 1.09 7.93 -51.93 -0.41 0.68 16 46 H 0.01 0.29 7.74 -51.93 -0.40 -0.12 16 47 H 0.25 6.81 8.31 -40.82 -0.34 6.47 16 48 H 0.09 2.24 6.03 -51.93 -0.31 1.93 16 49 H 0.01 0.33 6.94 -51.93 -0.36 -0.03 16 50 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 51 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 LS Contribution 403.71 15.07 6.08 6.08 Total: -1.00 -32.74 403.71 -9.76 -42.51 By element: Atomic # 1 Polarization: 13.33 SS G_CDS: -8.24 Total: 5.08 kcal Atomic # 6 Polarization: 2.49 SS G_CDS: -1.64 Total: 0.85 kcal Atomic # 7 Polarization: -55.40 SS G_CDS: -0.23 Total: -55.63 kcal Atomic # 8 Polarization: -14.43 SS G_CDS: -0.71 Total: -15.13 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.03 Total: 16.24 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -32.74 -9.76 -42.51 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699773493.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.174 kcal (2) G-P(sol) polarization free energy of solvation -32.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.764 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.508 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds