Wall clock time and date at job start Wed Apr 1 2020 04:49:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09000 * 109.46725 * 2 1 4 4 O 1.42899 * 109.46934 * 120.00103 * 2 1 3 5 5 C 1.42912 * 113.99745 * 269.99726 * 4 2 1 6 6 C 1.50701 * 109.46925 * 180.02562 * 5 4 2 7 7 C 1.38653 * 120.79030 * 269.72164 * 6 5 4 8 8 C 1.38198 * 119.16179 * 179.79907 * 7 6 5 9 9 N 1.31872 * 120.76262 * 0.48504 * 8 7 6 10 10 C 1.31868 * 121.72836 * 359.74373 * 9 8 7 11 11 C 1.38199 * 120.76275 * 0.02562 * 10 9 8 12 12 C 1.50698 * 109.47009 * 240.00249 * 2 1 3 13 13 O 1.21285 * 119.99582 * 245.00120 * 12 2 1 14 14 N 1.34766 * 120.00303 * 64.99537 * 12 2 1 15 15 C 1.46499 * 120.00144 * 180.27246 * 14 12 2 16 16 C 1.53004 * 109.45703 * 59.75700 * 15 14 12 17 17 C 1.53044 * 109.46301 * 299.80206 * 15 14 12 18 18 C 1.53194 * 109.30873 * 301.33704 * 17 15 14 19 19 N 1.46920 * 108.77730 * 305.36784 * 18 17 15 20 20 C 1.36943 * 120.62920 * 233.62718 * 19 18 17 21 21 H 1.07996 * 119.99351 * 27.66216 * 20 19 18 22 22 C 1.38808 * 120.00072 * 207.66100 * 20 19 18 23 23 N 1.31621 * 120.00069 * 17.37388 * 22 20 19 24 24 Si 1.86798 * 120.00185 * 197.37499 * 22 20 19 25 25 H 1.48504 * 109.46780 * 359.97438 * 24 22 20 26 26 H 1.48497 * 109.47386 * 119.99730 * 24 22 20 27 27 H 1.48499 * 109.47277 * 240.00214 * 24 22 20 28 28 C 1.46932 * 118.74097 * 53.60926 * 19 18 17 29 29 C 1.53041 * 109.46161 * 179.72692 * 15 14 12 30 30 H 1.08993 * 109.47085 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.46596 * 300.00004 * 1 2 3 32 32 H 1.09002 * 109.46825 * 59.99581 * 1 2 3 33 33 H 1.08998 * 109.46751 * 300.00032 * 5 4 2 34 34 H 1.09002 * 109.46711 * 60.00307 * 5 4 2 35 35 H 1.08001 * 120.41851 * 0.02562 * 7 6 5 36 36 H 1.07998 * 119.62029 * 180.20619 * 8 7 6 37 37 H 1.08000 * 119.61840 * 179.97438 * 10 9 8 38 38 H 1.08004 * 120.41838 * 180.02562 * 11 10 9 39 39 H 0.96998 * 120.00468 * 0.02562 * 14 12 2 40 40 H 1.08999 * 109.47006 * 60.00283 * 16 15 14 41 41 H 1.09005 * 109.47078 * 179.97438 * 16 15 14 42 42 H 1.09000 * 109.47552 * 300.00075 * 16 15 14 43 43 H 1.08997 * 109.49815 * 61.28870 * 17 15 14 44 44 H 1.09004 * 109.49711 * 181.39002 * 17 15 14 45 45 H 1.08996 * 109.58500 * 185.57712 * 18 17 15 46 46 H 1.09001 * 109.69906 * 65.22393 * 18 17 15 47 47 H 0.97003 * 120.00270 * 179.97438 * 23 22 20 48 48 H 1.08999 * 109.58450 * 186.60446 * 28 19 18 49 49 H 1.09000 * 109.70066 * 66.24896 * 28 19 18 50 50 H 1.09005 * 109.49796 * 178.60901 * 29 15 14 51 51 H 1.08994 * 109.49816 * 298.67348 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0064 -0.6737 1.1668 5 6 2.2001 0.1830 2.2941 6 6 2.7014 -0.6281 3.4611 7 6 1.8149 -1.2043 4.3581 8 6 2.3113 -1.9449 5.4139 9 7 3.6107 -2.0982 5.5783 10 6 4.4829 -1.5610 4.7479 11 6 4.0604 -0.8112 3.6666 12 6 2.0324 -0.7104 -1.2305 13 8 2.6530 -1.7467 -1.1215 14 7 1.7919 -0.1942 -2.4519 15 6 2.2750 -0.8879 -3.6484 16 6 1.6634 -2.2892 -3.7070 17 6 3.8003 -0.9997 -3.5920 18 6 4.4080 0.4035 -3.4988 19 7 3.9031 1.2127 -4.6163 20 6 4.7695 1.8608 -5.4558 21 1 5.7635 1.4690 -5.6130 22 6 4.3701 3.0211 -6.1044 23 7 3.3196 3.6874 -5.6741 24 14 5.3232 3.6372 -7.5881 25 1 6.4539 2.7158 -7.8674 26 1 4.4232 3.6889 -8.7681 27 1 5.8508 4.9967 -7.3080 28 6 2.4509 1.3131 -4.8164 29 6 1.8652 -0.1002 -4.8949 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3632 0.5139 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 2.9320 0.9513 2.0450 34 1 1.2538 0.6547 2.5588 35 1 0.7497 -1.0789 4.2311 36 1 1.6273 -2.3997 6.1151 37 1 5.5397 -1.7080 4.9152 38 1 4.7796 -0.3741 2.9897 39 1 1.2958 0.6347 -2.5392 40 1 0.5770 -2.2100 -3.7466 41 1 2.0224 -2.8054 -4.5974 42 1 1.9547 -2.8502 -2.8191 43 1 4.0904 -1.5807 -2.7166 44 1 4.1625 -1.4938 -4.4936 45 1 5.4942 0.3359 -3.5581 46 1 4.1216 0.8659 -2.5542 47 1 3.0407 4.4985 -6.1272 48 1 2.2460 1.8457 -5.7451 49 1 2.0011 1.8492 -3.9808 50 1 2.2456 -0.6028 -5.7843 51 1 0.7781 -0.0417 -4.9471 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699773493.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:49:33 Heat of formation + Delta-G solvation = -41.697766 kcal Electronic energy + Delta-G solvation = -31357.098395 eV Core-core repulsion = 27256.443464 eV Total energy + Delta-G solvation = -4100.654931 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.58270 -41.09960 -39.51563 -38.26656 -36.06958 -34.55750 -33.78049 -32.83566 -32.15720 -31.65629 -31.19940 -29.08148 -27.87929 -25.96215 -25.32131 -24.42160 -23.94811 -23.00086 -22.71911 -21.61804 -20.14895 -18.92383 -18.53131 -17.92131 -17.45435 -17.40387 -16.84439 -16.56652 -16.36499 -16.14445 -15.78921 -15.47032 -15.43481 -15.14253 -14.81164 -14.80071 -14.58916 -14.51251 -14.18756 -14.04149 -13.67948 -13.38867 -13.26129 -13.12289 -13.02703 -12.95480 -12.82394 -12.62028 -12.55345 -12.49326 -12.23901 -12.14248 -11.98295 -11.76611 -11.33199 -11.30028 -10.91389 -10.75651 -10.53519 -10.48143 -10.25444 -10.09780 -9.93403 -8.65563 -7.87614 -5.30738 0.12799 0.18959 1.45556 1.48865 1.58205 1.68739 1.94788 2.51352 2.71958 3.09187 3.27259 3.56073 3.59722 3.71020 3.75081 3.76741 3.91152 3.96748 4.06534 4.09240 4.11058 4.16278 4.19449 4.38728 4.42032 4.48094 4.62609 4.68662 4.71827 4.74292 4.80234 4.82235 4.87657 4.88687 4.92360 4.97910 4.98508 5.14826 5.19961 5.22011 5.28744 5.34313 5.36404 5.49946 5.64920 5.69264 5.74392 5.78361 6.01354 6.40113 6.68863 6.98773 7.16894 7.34479 7.86719 8.38279 9.18256 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.015583 B = 0.002394 C = 0.002272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1796.376224 B =11691.149856 C =12322.242131 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.071 3.929 3 H 0.102 0.898 4 O -0.375 6.375 5 C 0.095 3.905 6 C -0.058 4.058 7 C -0.152 4.152 8 C 0.085 3.915 9 N -0.509 5.509 10 C 0.084 3.916 11 C -0.162 4.162 12 C 0.513 3.487 13 O -0.560 6.560 14 N -0.703 5.703 15 C 0.189 3.811 16 C -0.151 4.151 17 C -0.132 4.132 18 C 0.155 3.845 19 N -0.606 5.606 20 C -0.262 4.262 21 H 0.057 0.943 22 C -0.044 4.044 23 N -0.927 5.927 24 Si 0.961 3.039 25 H -0.273 1.273 26 H -0.287 1.287 27 H -0.293 1.293 28 C 0.178 3.822 29 C -0.131 4.131 30 H 0.060 0.940 31 H 0.091 0.909 32 H 0.086 0.914 33 H 0.069 0.931 34 H 0.092 0.908 35 H 0.160 0.840 36 H 0.182 0.818 37 H 0.174 0.826 38 H 0.142 0.858 39 H 0.407 0.593 40 H 0.067 0.933 41 H 0.067 0.933 42 H 0.057 0.943 43 H 0.066 0.934 44 H 0.060 0.940 45 H 0.038 0.962 46 H 0.009 0.991 47 H 0.251 0.749 48 H 0.057 0.943 49 H 0.012 0.988 50 H 0.066 0.934 51 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.364 -6.889 16.580 20.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.010 3.990 3 H 0.120 0.880 4 O -0.294 6.294 5 C 0.019 3.981 6 C -0.066 4.066 7 C -0.171 4.171 8 C -0.071 4.071 9 N -0.219 5.219 10 C -0.072 4.072 11 C -0.182 4.182 12 C 0.299 3.701 13 O -0.439 6.439 14 N -0.356 5.356 15 C 0.104 3.896 16 C -0.209 4.209 17 C -0.172 4.172 18 C 0.029 3.971 19 N -0.329 5.329 20 C -0.392 4.392 21 H 0.075 0.925 22 C -0.240 4.240 23 N -0.573 5.573 24 Si 0.790 3.210 25 H -0.198 1.198 26 H -0.214 1.214 27 H -0.220 1.220 28 C 0.052 3.948 29 C -0.171 4.171 30 H 0.079 0.921 31 H 0.110 0.890 32 H 0.105 0.895 33 H 0.087 0.913 34 H 0.110 0.890 35 H 0.178 0.822 36 H 0.199 0.801 37 H 0.191 0.809 38 H 0.160 0.840 39 H 0.243 0.757 40 H 0.086 0.914 41 H 0.086 0.914 42 H 0.076 0.924 43 H 0.085 0.915 44 H 0.078 0.922 45 H 0.057 0.943 46 H 0.027 0.973 47 H 0.060 0.940 48 H 0.075 0.925 49 H 0.030 0.970 50 H 0.085 0.915 51 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -8.622 -8.171 17.297 20.984 hybrid contribution 0.335 1.692 -1.658 2.392 sum -8.288 -6.479 15.640 18.849 Atomic orbital electron populations 1.22203 0.91160 1.03610 1.04957 1.22022 0.96738 0.96367 0.83908 0.88050 1.88070 1.87045 1.34954 1.19341 1.21587 1.01657 0.91319 0.83526 1.20236 0.93976 0.97141 0.95287 1.22357 1.02085 0.97510 0.95176 1.23252 0.91870 0.95314 0.96694 1.67694 1.04401 1.20505 1.29341 1.23100 1.00626 0.93021 0.90417 1.22322 0.96479 1.00064 0.99333 1.20768 0.79140 0.85192 0.85000 1.90625 1.41229 1.25107 1.86909 1.46015 1.57199 1.27530 1.04831 1.20147 0.92909 0.92323 0.84239 1.22115 1.00889 0.95398 1.02484 1.22241 0.95717 0.97718 1.01502 1.20807 0.96170 0.90608 0.89471 1.44268 1.02374 1.55989 1.30292 1.19454 0.97005 1.03304 1.19484 0.92480 1.25645 0.99662 0.95822 1.02831 1.70138 1.29131 1.17135 1.40942 0.85305 0.78265 0.77491 0.79944 1.19788 1.21382 1.21991 1.20615 0.82340 0.92323 0.99486 1.22335 1.00923 0.97605 0.96190 0.92114 0.89021 0.89476 0.91259 0.89042 0.82221 0.80105 0.80876 0.84018 0.75658 0.91434 0.91423 0.92439 0.91513 0.92165 0.94327 0.97315 0.94002 0.92462 0.96977 0.91510 0.89705 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.51 9.48 71.98 0.68 -1.83 16 2 C 0.07 1.56 3.13 29.85 0.09 1.66 16 3 H 0.10 1.93 7.79 -2.39 -0.02 1.91 16 4 O -0.38 -9.36 9.51 -129.99 -1.24 -10.60 16 5 C 0.09 1.69 5.92 71.24 0.42 2.11 16 6 C -0.06 -1.13 5.55 -19.67 -0.11 -1.24 16 7 C -0.15 -2.49 9.82 22.36 0.22 -2.27 16 8 C 0.09 1.48 11.18 84.68 0.95 2.43 16 9 N -0.51 -11.07 10.36 -195.85 -2.03 -13.09 16 10 C 0.08 1.68 11.18 84.68 0.95 2.63 16 11 C -0.16 -3.26 9.82 22.36 0.22 -3.04 16 12 C 0.51 15.27 6.60 87.66 0.58 15.85 16 13 O -0.56 -21.06 12.73 15.95 0.20 -20.86 16 14 N -0.70 -20.05 4.07 -422.80 -1.72 -21.77 16 15 C 0.19 6.01 0.66 3.63 0.00 6.01 16 16 C -0.15 -4.26 8.40 71.98 0.60 -3.65 16 17 C -0.13 -4.89 4.67 30.67 0.14 -4.75 16 18 C 0.16 6.67 6.25 86.36 0.54 7.21 16 19 N -0.61 -29.35 2.99 -699.11 -2.09 -31.45 16 20 C -0.26 -14.20 9.58 84.03 0.81 -13.40 16 21 H 0.06 3.11 7.89 -2.91 -0.02 3.09 16 22 C -0.04 -2.37 4.91 84.86 0.42 -1.95 16 23 N -0.93 -51.91 11.19 21.65 0.24 -51.67 16 24 Si 0.96 43.91 29.59 68.60 2.03 45.94 16 25 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 26 H -0.29 -12.96 7.11 99.48 0.71 -12.25 16 27 H -0.29 -13.40 7.11 99.48 0.71 -12.69 16 28 C 0.18 7.72 5.04 86.36 0.43 8.16 16 29 C -0.13 -4.38 4.96 30.67 0.15 -4.23 16 30 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 31 H 0.09 0.99 7.87 -2.39 -0.02 0.97 16 32 H 0.09 1.14 7.93 -2.39 -0.02 1.12 16 33 H 0.07 1.15 8.04 -2.39 -0.02 1.13 16 34 H 0.09 1.09 7.83 -2.39 -0.02 1.07 16 35 H 0.16 1.71 8.06 -2.91 -0.02 1.69 16 36 H 0.18 1.98 8.06 -2.91 -0.02 1.96 16 37 H 0.17 2.58 8.06 -2.91 -0.02 2.56 16 38 H 0.14 2.58 8.06 -2.91 -0.02 2.55 16 39 H 0.41 10.38 7.05 -92.71 -0.65 9.73 16 40 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 41 H 0.07 1.79 8.14 -2.38 -0.02 1.77 16 42 H 0.06 1.84 6.16 -2.39 -0.01 1.83 16 43 H 0.07 2.59 6.21 -2.39 -0.01 2.57 16 44 H 0.06 2.25 8.14 -2.39 -0.02 2.24 16 45 H 0.04 1.70 7.93 -2.39 -0.02 1.68 16 46 H 0.01 0.39 7.74 -2.39 -0.02 0.37 16 47 H 0.25 13.57 8.31 -92.71 -0.77 12.80 16 48 H 0.06 2.88 6.03 -2.39 -0.01 2.86 16 49 H 0.01 0.53 6.94 -2.39 -0.02 0.51 16 50 H 0.07 2.33 8.14 -2.38 -0.02 2.31 16 51 H 0.08 2.35 8.14 -2.39 -0.02 2.33 16 Total: -1.00 -71.23 403.71 2.77 -68.46 By element: Atomic # 1 Polarization: 25.09 SS G_CDS: 0.27 Total: 25.36 kcal Atomic # 6 Polarization: 2.58 SS G_CDS: 7.10 Total: 9.68 kcal Atomic # 7 Polarization: -112.38 SS G_CDS: -5.60 Total: -117.98 kcal Atomic # 8 Polarization: -30.43 SS G_CDS: -1.03 Total: -31.46 kcal Atomic # 14 Polarization: 43.91 SS G_CDS: 2.03 Total: 45.94 kcal Total: -71.23 2.77 -68.46 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699773493.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.765 kcal (2) G-P(sol) polarization free energy of solvation -71.229 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.465 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.767 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.462 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.698 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds