Wall clock time and date at job start Wed Apr 1 2020 05:20:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09005 * 109.47190 * 2 1 4 4 O 1.42899 * 109.47367 * 240.00669 * 2 1 3 5 5 C 1.35681 * 117.00129 * 89.99533 * 4 2 1 6 6 C 1.38922 * 119.68462 * 179.73004 * 5 4 2 7 7 C 1.38374 * 119.11057 * 179.75555 * 6 5 4 8 8 C 1.38830 * 118.48438 * 0.51149 * 7 6 5 9 9 C 1.38043 * 119.28869 * 359.72769 * 8 7 6 10 10 N 1.31956 * 120.83910 * 0.02562 * 9 8 7 11 11 C 1.50695 * 109.47520 * 120.00380 * 2 1 3 12 12 O 1.21289 * 120.00237 * 120.00140 * 11 2 1 13 13 N 1.34775 * 120.00103 * 300.00246 * 11 2 1 14 14 C 1.46499 * 120.00337 * 179.97438 * 13 11 2 15 15 H 1.08998 * 109.47404 * 34.99690 * 14 13 11 16 16 C 1.53002 * 109.47596 * 155.00295 * 14 13 11 17 17 C 1.52997 * 109.47369 * 179.97438 * 16 14 13 18 18 C 1.52994 * 109.47404 * 300.00003 * 17 16 14 19 19 H 1.09008 * 109.46970 * 299.99951 * 18 17 16 20 20 C 1.52997 * 109.47404 * 180.02562 * 18 17 16 21 21 N 1.46505 * 109.47212 * 174.99693 * 20 18 17 22 22 C 1.36936 * 119.99992 * 179.97438 * 21 20 18 23 23 H 1.08006 * 119.99834 * 0.02562 * 22 21 20 24 24 C 1.38801 * 120.00093 * 180.02562 * 22 21 20 25 25 N 1.31619 * 120.00176 * 0.02562 * 24 22 21 26 26 Si 1.86804 * 120.00265 * 180.02562 * 24 22 21 27 27 H 1.48500 * 109.46951 * 89.99797 * 26 24 22 28 28 H 1.48500 * 109.47313 * 210.00112 * 26 24 22 29 29 H 1.48501 * 109.46991 * 330.00153 * 26 24 22 30 30 C 1.53001 * 109.47368 * 59.99530 * 18 17 16 31 31 C 1.52997 * 109.47242 * 300.00569 * 30 18 17 32 32 H 1.08996 * 109.47292 * 299.99490 * 1 2 3 33 33 H 1.09004 * 109.47308 * 59.99951 * 1 2 3 34 34 H 1.09004 * 109.47154 * 179.97438 * 1 2 3 35 35 H 1.08000 * 120.44382 * 0.02562 * 6 5 4 36 36 H 1.07998 * 120.76026 * 180.24193 * 7 6 5 37 37 H 1.08007 * 120.35741 * 179.75447 * 8 7 6 38 38 H 1.08011 * 119.58051 * 180.02562 * 9 8 7 39 39 H 0.97001 * 119.99977 * 0.02562 * 13 11 2 40 40 H 1.08995 * 109.46734 * 59.99319 * 16 14 13 41 41 H 1.09002 * 109.46264 * 300.00255 * 16 14 13 42 42 H 1.09000 * 109.46875 * 179.97438 * 17 16 14 43 43 H 1.09008 * 109.47017 * 59.99925 * 17 16 14 44 44 H 1.09002 * 109.47153 * 54.99686 * 20 18 17 45 45 H 1.09001 * 109.46832 * 294.99876 * 20 18 17 46 46 H 0.96996 * 119.99606 * 0.02562 * 21 20 18 47 47 H 0.97001 * 120.00803 * 179.97438 * 25 24 22 48 48 H 1.09008 * 109.46731 * 60.00275 * 30 18 17 49 49 H 1.08998 * 109.47430 * 180.02562 * 30 18 17 50 50 H 1.08998 * 109.46934 * 299.99660 * 31 30 18 51 51 H 1.09000 * 109.47325 * 179.97438 * 31 30 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0063 -0.6735 -1.1668 5 6 2.2116 0.0832 -2.2742 6 6 2.6795 -0.5135 -3.4382 7 6 2.8798 0.2685 -4.5620 8 6 2.6138 1.6285 -4.4783 9 6 2.1556 2.1549 -3.2873 10 7 1.9694 1.3827 -2.2336 11 6 2.0323 -0.7104 1.2303 12 8 2.7297 -1.6965 1.1190 13 7 1.7068 -0.2501 2.4545 14 6 2.1947 -0.9411 3.6506 15 1 3.1938 -1.3336 3.4614 16 6 2.2463 0.0417 4.8221 17 6 2.7553 -0.6801 6.0714 18 6 1.8104 -1.8334 6.4146 19 1 0.8113 -1.4406 6.6037 20 6 2.3191 -2.5548 7.6643 21 7 1.3532 -3.5819 8.0624 22 6 1.5966 -4.3614 9.1616 23 1 2.5005 -4.2187 9.7353 24 6 0.6818 -5.3348 9.5385 25 7 -0.4195 -5.5090 8.8391 26 14 1.0135 -6.3977 11.0385 27 1 0.4408 -5.7458 12.2435 28 1 0.3846 -7.7297 10.8502 29 1 2.4788 -6.5625 11.2140 30 6 1.7587 -2.8163 5.2432 31 6 1.2497 -2.0944 3.9939 32 1 -0.3633 0.5137 0.8900 33 1 -0.3634 0.5138 -0.8900 34 1 -0.3634 -1.0277 -0.0005 35 1 2.8801 -1.5744 -3.4668 36 1 3.2391 -0.1684 -5.4820 37 1 2.7634 2.2678 -5.3359 38 1 1.9467 3.2123 -3.2170 39 1 1.1487 0.5383 2.5436 40 1 1.2472 0.4342 5.0113 41 1 2.9192 0.8636 4.5773 42 1 2.7925 0.0203 6.9058 43 1 3.7544 -1.0729 5.8824 44 1 2.4400 -1.8361 8.4748 45 1 3.2792 -3.0233 7.4478 46 1 0.5416 -3.7102 7.5469 47 1 -1.0587 -6.1895 9.1022 48 1 2.7578 -3.2091 5.0542 49 1 1.0852 -3.6377 5.4875 50 1 0.2507 -1.7017 4.1829 51 1 1.2133 -2.7945 3.1592 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001700104716.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:20:20 Heat of formation + Delta-G solvation = -42.757276 kcal Electronic energy + Delta-G solvation = -29810.104296 eV Core-core repulsion = 25709.403421 eV Total energy + Delta-G solvation = -4100.700875 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.18843 -40.17915 -38.69239 -37.73742 -35.20452 -33.80507 -32.94847 -32.53807 -31.18370 -30.61854 -30.36294 -28.86926 -25.59346 -24.82584 -24.00370 -23.32713 -22.80942 -22.26978 -20.73778 -20.50615 -19.55740 -18.94206 -17.88797 -17.05083 -16.79683 -16.36146 -16.23449 -16.06192 -15.11715 -14.95791 -14.89537 -14.67547 -14.16748 -14.10723 -13.84609 -13.71388 -13.58617 -13.49137 -13.17703 -13.05486 -12.74537 -12.42158 -12.36281 -12.19374 -12.13311 -11.93945 -11.86273 -11.50571 -10.99358 -10.97279 -10.88983 -10.73526 -10.39945 -10.31306 -10.15087 -10.08966 -10.00989 -9.95793 -9.71400 -9.56261 -9.10133 -8.92724 -8.81313 -6.85091 -5.71468 -2.99261 0.71651 0.82145 2.20660 2.41888 3.20958 3.35175 3.46889 3.51904 3.53777 3.81705 4.32407 4.41746 4.52547 4.59530 4.63169 4.64715 4.72337 4.76995 4.78792 4.85541 5.08911 5.18014 5.27709 5.30504 5.33371 5.37316 5.50936 5.55461 5.58388 5.64177 5.67801 5.69520 5.72519 5.75427 5.96436 5.98405 6.06615 6.12567 6.27566 6.29593 6.30685 6.42508 6.50392 6.61541 6.78654 6.81172 6.91535 7.02113 7.27600 7.39842 7.74935 8.01438 8.47967 9.58916 10.18460 10.53048 11.51575 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.028486 B = 0.001611 C = 0.001576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 982.717166 B =17371.226003 C =17762.126649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.073 3.927 3 H 0.114 0.886 4 O -0.275 6.275 5 C 0.324 3.676 6 C -0.188 4.188 7 C -0.040 4.040 8 C -0.215 4.215 9 C 0.139 3.861 10 N -0.544 5.544 11 C 0.514 3.486 12 O -0.517 6.517 13 N -0.720 5.720 14 C 0.146 3.854 15 H 0.088 0.912 16 C -0.122 4.122 17 C -0.107 4.107 18 C -0.095 4.095 19 H 0.070 0.930 20 C 0.157 3.843 21 N -0.732 5.732 22 C -0.237 4.237 23 H 0.069 0.931 24 C -0.015 4.015 25 N -0.934 5.934 26 Si 0.906 3.094 27 H -0.291 1.291 28 H -0.292 1.292 29 H -0.282 1.282 30 C -0.107 4.107 31 C -0.127 4.127 32 H 0.079 0.921 33 H 0.073 0.927 34 H 0.071 0.929 35 H 0.144 0.856 36 H 0.142 0.858 37 H 0.137 0.863 38 H 0.160 0.840 39 H 0.399 0.601 40 H 0.068 0.932 41 H 0.064 0.936 42 H 0.067 0.933 43 H 0.064 0.936 44 H 0.017 0.983 45 H 0.018 0.982 46 H 0.384 0.616 47 H 0.254 0.746 48 H 0.060 0.940 49 H 0.077 0.923 50 H 0.062 0.938 51 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.897 20.212 -27.673 34.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.013 3.987 3 H 0.132 0.868 4 O -0.181 6.181 5 C 0.145 3.855 6 C -0.208 4.208 7 C -0.065 4.065 8 C -0.235 4.235 9 C -0.016 4.016 10 N -0.268 5.268 11 C 0.299 3.701 12 O -0.392 6.392 13 N -0.373 5.373 14 C 0.043 3.957 15 H 0.106 0.894 16 C -0.160 4.160 17 C -0.146 4.146 18 C -0.114 4.114 19 H 0.088 0.912 20 C 0.029 3.971 21 N -0.376 5.376 22 C -0.369 4.369 23 H 0.087 0.913 24 C -0.211 4.211 25 N -0.583 5.583 26 Si 0.737 3.263 27 H -0.218 1.218 28 H -0.218 1.218 29 H -0.208 1.208 30 C -0.145 4.145 31 C -0.165 4.165 32 H 0.097 0.903 33 H 0.092 0.908 34 H 0.090 0.910 35 H 0.162 0.838 36 H 0.159 0.841 37 H 0.155 0.845 38 H 0.177 0.823 39 H 0.233 0.767 40 H 0.086 0.914 41 H 0.083 0.917 42 H 0.086 0.914 43 H 0.083 0.917 44 H 0.035 0.965 45 H 0.036 0.964 46 H 0.217 0.783 47 H 0.064 0.936 48 H 0.079 0.921 49 H 0.096 0.904 50 H 0.081 0.919 51 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 4.238 19.463 -26.777 33.373 hybrid contribution -0.232 -0.455 -0.008 0.511 sum 4.005 19.008 -26.785 33.088 Atomic orbital electron populations 1.22171 0.92298 1.03913 1.03789 1.22099 0.95814 0.97953 0.82860 0.86840 1.86404 1.79765 1.34322 1.17577 1.19909 0.91085 0.87388 0.87073 1.21131 1.05882 1.02438 0.91391 1.21445 0.93980 0.93440 0.97667 1.21997 1.05265 0.96240 1.00020 1.22423 0.92636 0.99201 0.87343 1.67251 1.22092 1.04722 1.32703 1.20188 0.80736 0.84931 0.84292 1.90764 1.36732 1.25272 1.86415 1.46018 1.53923 1.32131 1.05212 1.21136 0.99043 0.92782 0.82759 0.89357 1.21789 1.01991 0.97602 0.94635 1.21470 0.99486 0.97434 0.96176 1.21353 0.99285 0.94978 0.95746 0.91176 1.20684 0.93037 0.90795 0.92571 1.42381 1.22909 1.39480 1.32833 1.19248 1.03587 1.10919 1.03096 0.91272 1.24723 0.97038 0.99909 0.99440 1.69657 1.11131 1.36594 1.40953 0.86197 0.77369 0.79932 0.82755 1.21804 1.21819 1.20812 1.21492 1.01986 0.98306 0.92699 1.21931 0.98753 0.97023 0.98820 0.90253 0.90817 0.91016 0.83847 0.84052 0.84502 0.82310 0.76701 0.91373 0.91704 0.91422 0.91725 0.96519 0.96413 0.78251 0.93601 0.92105 0.90406 0.91881 0.91805 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.29 9.43 37.15 0.35 -0.94 16 2 C 0.07 0.73 2.91 -27.89 -0.08 0.65 16 3 H 0.11 1.01 6.98 -51.93 -0.36 0.65 16 4 O -0.28 -3.34 9.29 -38.66 -0.36 -3.70 16 5 C 0.32 3.35 7.45 -17.12 -0.13 3.22 16 6 C -0.19 -1.57 10.04 -39.28 -0.39 -1.96 16 7 C -0.04 -0.23 10.17 -39.31 -0.40 -0.63 16 8 C -0.21 -1.12 10.11 -39.43 -0.40 -1.52 16 9 C 0.14 0.89 11.17 -17.57 -0.20 0.70 16 10 N -0.54 -4.95 8.65 -13.33 -0.12 -5.07 16 11 C 0.51 6.36 7.20 -10.99 -0.08 6.28 16 12 O -0.52 -8.80 16.16 -14.36 -0.23 -9.04 16 13 N -0.72 -7.14 4.97 -53.80 -0.27 -7.40 16 14 C 0.15 1.72 2.46 -67.93 -0.17 1.56 16 15 H 0.09 1.22 7.58 -51.93 -0.39 0.83 16 16 C -0.12 -1.24 5.39 -26.73 -0.14 -1.38 16 17 C -0.11 -1.33 5.20 -26.74 -0.14 -1.47 16 18 C -0.09 -1.51 2.22 -90.62 -0.20 -1.71 16 19 H 0.07 1.16 8.14 -51.92 -0.42 0.73 16 20 C 0.16 3.19 5.65 -4.04 -0.02 3.17 16 21 N -0.73 -18.82 5.33 -59.91 -0.32 -19.14 16 22 C -0.24 -6.78 9.99 -15.06 -0.15 -6.93 16 23 H 0.07 1.92 7.83 -52.48 -0.41 1.51 16 24 C -0.02 -0.45 5.50 -17.43 -0.10 -0.55 16 25 N -0.93 -28.68 13.06 55.49 0.72 -27.95 16 26 Si 0.91 22.82 29.55 -169.99 -5.02 17.80 16 27 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 28 H -0.29 -7.40 7.11 56.52 0.40 -6.99 16 29 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 30 C -0.11 -1.73 5.08 -26.73 -0.14 -1.87 16 31 C -0.13 -1.74 5.49 -26.73 -0.15 -1.89 16 32 H 0.08 0.45 7.56 -51.93 -0.39 0.05 16 33 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.14 1.07 8.06 -52.49 -0.42 0.65 16 36 H 0.14 0.43 8.06 -52.49 -0.42 0.01 16 37 H 0.14 0.35 8.06 -52.48 -0.42 -0.07 16 38 H 0.16 0.55 8.06 -52.48 -0.42 0.13 16 39 H 0.40 2.68 8.02 -40.82 -0.33 2.35 16 40 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 41 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 42 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 43 H 0.06 0.81 8.14 -51.92 -0.42 0.38 16 44 H 0.02 0.35 8.14 -51.93 -0.42 -0.08 16 45 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 46 H 0.38 10.31 6.85 -40.82 -0.28 10.03 16 47 H 0.25 7.55 8.31 -40.82 -0.34 7.21 16 48 H 0.06 1.01 8.14 -51.92 -0.42 0.59 16 49 H 0.08 1.48 7.18 -51.93 -0.37 1.11 16 50 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 51 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 LS Contribution 414.05 15.07 6.24 6.24 Total: -1.00 -35.53 414.05 -10.32 -45.85 By element: Atomic # 1 Polarization: 16.12 SS G_CDS: -8.44 Total: 7.68 kcal Atomic # 6 Polarization: -2.74 SS G_CDS: -2.53 Total: -5.27 kcal Atomic # 7 Polarization: -59.58 SS G_CDS: 0.02 Total: -59.56 kcal Atomic # 8 Polarization: -12.15 SS G_CDS: -0.59 Total: -12.74 kcal Atomic # 14 Polarization: 22.82 SS G_CDS: -5.02 Total: 17.80 kcal Total LS contribution 6.24 Total: 6.24 kcal Total: -35.53 -10.32 -45.85 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700104716.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.095 kcal (2) G-P(sol) polarization free energy of solvation -35.530 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.435 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.322 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.852 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.757 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds