Wall clock time and date at job start Wed Apr 1 2020 05:20:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09005 * 109.47190 * 2 1 4 4 O 1.42899 * 109.47367 * 240.00669 * 2 1 3 5 5 C 1.35681 * 117.00129 * 89.99533 * 4 2 1 6 6 C 1.38922 * 119.68462 * 179.73004 * 5 4 2 7 7 C 1.38374 * 119.11057 * 179.75555 * 6 5 4 8 8 C 1.38830 * 118.48438 * 0.51149 * 7 6 5 9 9 C 1.38043 * 119.28869 * 359.72769 * 8 7 6 10 10 N 1.31956 * 120.83910 * 0.02562 * 9 8 7 11 11 C 1.50695 * 109.47520 * 120.00380 * 2 1 3 12 12 O 1.21289 * 120.00237 * 120.00140 * 11 2 1 13 13 N 1.34775 * 120.00103 * 300.00246 * 11 2 1 14 14 C 1.46499 * 120.00337 * 179.97438 * 13 11 2 15 15 H 1.08998 * 109.47404 * 34.99690 * 14 13 11 16 16 C 1.53002 * 109.47596 * 155.00295 * 14 13 11 17 17 C 1.52997 * 109.47369 * 179.97438 * 16 14 13 18 18 C 1.52994 * 109.47404 * 300.00003 * 17 16 14 19 19 H 1.09008 * 109.46970 * 299.99951 * 18 17 16 20 20 C 1.52997 * 109.47404 * 180.02562 * 18 17 16 21 21 N 1.46505 * 109.47212 * 174.99693 * 20 18 17 22 22 C 1.36936 * 119.99992 * 179.97438 * 21 20 18 23 23 H 1.08006 * 119.99834 * 0.02562 * 22 21 20 24 24 C 1.38801 * 120.00093 * 180.02562 * 22 21 20 25 25 N 1.31619 * 120.00176 * 0.02562 * 24 22 21 26 26 Si 1.86804 * 120.00265 * 180.02562 * 24 22 21 27 27 H 1.48500 * 109.46951 * 89.99797 * 26 24 22 28 28 H 1.48500 * 109.47313 * 210.00112 * 26 24 22 29 29 H 1.48501 * 109.46991 * 330.00153 * 26 24 22 30 30 C 1.53001 * 109.47368 * 59.99530 * 18 17 16 31 31 C 1.52997 * 109.47242 * 300.00569 * 30 18 17 32 32 H 1.08996 * 109.47292 * 299.99490 * 1 2 3 33 33 H 1.09004 * 109.47308 * 59.99951 * 1 2 3 34 34 H 1.09004 * 109.47154 * 179.97438 * 1 2 3 35 35 H 1.08000 * 120.44382 * 0.02562 * 6 5 4 36 36 H 1.07998 * 120.76026 * 180.24193 * 7 6 5 37 37 H 1.08007 * 120.35741 * 179.75447 * 8 7 6 38 38 H 1.08011 * 119.58051 * 180.02562 * 9 8 7 39 39 H 0.97001 * 119.99977 * 0.02562 * 13 11 2 40 40 H 1.08995 * 109.46734 * 59.99319 * 16 14 13 41 41 H 1.09002 * 109.46264 * 300.00255 * 16 14 13 42 42 H 1.09000 * 109.46875 * 179.97438 * 17 16 14 43 43 H 1.09008 * 109.47017 * 59.99925 * 17 16 14 44 44 H 1.09002 * 109.47153 * 54.99686 * 20 18 17 45 45 H 1.09001 * 109.46832 * 294.99876 * 20 18 17 46 46 H 0.96996 * 119.99606 * 0.02562 * 21 20 18 47 47 H 0.97001 * 120.00803 * 179.97438 * 25 24 22 48 48 H 1.09008 * 109.46731 * 60.00275 * 30 18 17 49 49 H 1.08998 * 109.47430 * 180.02562 * 30 18 17 50 50 H 1.08998 * 109.46934 * 299.99660 * 31 30 18 51 51 H 1.09000 * 109.47325 * 179.97438 * 31 30 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0063 -0.6735 -1.1668 5 6 2.2116 0.0832 -2.2742 6 6 2.6795 -0.5135 -3.4382 7 6 2.8798 0.2685 -4.5620 8 6 2.6138 1.6285 -4.4783 9 6 2.1556 2.1549 -3.2873 10 7 1.9694 1.3827 -2.2336 11 6 2.0323 -0.7104 1.2303 12 8 2.7297 -1.6965 1.1190 13 7 1.7068 -0.2501 2.4545 14 6 2.1947 -0.9411 3.6506 15 1 3.1938 -1.3336 3.4614 16 6 2.2463 0.0417 4.8221 17 6 2.7553 -0.6801 6.0714 18 6 1.8104 -1.8334 6.4146 19 1 0.8113 -1.4406 6.6037 20 6 2.3191 -2.5548 7.6643 21 7 1.3532 -3.5819 8.0624 22 6 1.5966 -4.3614 9.1616 23 1 2.5005 -4.2187 9.7353 24 6 0.6818 -5.3348 9.5385 25 7 -0.4195 -5.5090 8.8391 26 14 1.0135 -6.3977 11.0385 27 1 0.4408 -5.7458 12.2435 28 1 0.3846 -7.7297 10.8502 29 1 2.4788 -6.5625 11.2140 30 6 1.7587 -2.8163 5.2432 31 6 1.2497 -2.0944 3.9939 32 1 -0.3633 0.5137 0.8900 33 1 -0.3634 0.5138 -0.8900 34 1 -0.3634 -1.0277 -0.0005 35 1 2.8801 -1.5744 -3.4668 36 1 3.2391 -0.1684 -5.4820 37 1 2.7634 2.2678 -5.3359 38 1 1.9467 3.2123 -3.2170 39 1 1.1487 0.5383 2.5436 40 1 1.2472 0.4342 5.0113 41 1 2.9192 0.8636 4.5773 42 1 2.7925 0.0203 6.9058 43 1 3.7544 -1.0729 5.8824 44 1 2.4400 -1.8361 8.4748 45 1 3.2792 -3.0233 7.4478 46 1 0.5416 -3.7102 7.5469 47 1 -1.0587 -6.1895 9.1022 48 1 2.7578 -3.2091 5.0542 49 1 1.0852 -3.6377 5.4875 50 1 0.2507 -1.7017 4.1829 51 1 1.2133 -2.7945 3.1592 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700104716.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:20:19 Heat of formation + Delta-G solvation = -66.847041 kcal Electronic energy + Delta-G solvation = -29811.148906 eV Core-core repulsion = 25709.403421 eV Total energy + Delta-G solvation = -4101.745485 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.88234 -41.06043 -39.68956 -38.64524 -36.72199 -35.27333 -33.69105 -33.40025 -32.69451 -31.73240 -31.06701 -30.26482 -26.95435 -25.89026 -24.75616 -24.41958 -23.89130 -23.44732 -21.99070 -21.47554 -20.77143 -19.60340 -19.17288 -18.66140 -17.52769 -17.14554 -16.96060 -16.73487 -16.66595 -16.04461 -16.00309 -15.57674 -15.44030 -15.28864 -15.18374 -14.88719 -14.60632 -14.44268 -14.23139 -13.99242 -13.79455 -13.52212 -13.40724 -13.23257 -13.09991 -12.93717 -12.86130 -12.79217 -12.77357 -12.22449 -12.16453 -12.07333 -12.03137 -11.90292 -11.47272 -11.27693 -11.17526 -10.93233 -10.90180 -10.79038 -10.59963 -10.12391 -9.50239 -8.97768 -7.94931 -5.23127 0.19860 0.31555 1.39413 1.46096 1.48238 1.51601 1.56658 2.43281 2.56054 2.82290 3.27550 3.38323 3.50784 3.71402 3.74582 3.84684 3.92215 3.98337 4.05527 4.07675 4.11800 4.15744 4.22729 4.36654 4.43040 4.44364 4.53010 4.56663 4.59128 4.64642 4.67367 4.80138 4.81627 4.94249 5.05235 5.07423 5.07978 5.08902 5.13140 5.20732 5.24075 5.29472 5.30938 5.43481 5.46726 5.53301 5.53643 5.61773 6.16835 6.27740 6.46031 6.84334 7.13002 7.33803 8.11782 8.34834 9.28684 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.028486 B = 0.001611 C = 0.001576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 982.717166 B =17371.226003 C =17762.126649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.078 3.922 3 H 0.127 0.873 4 O -0.306 6.306 5 C 0.293 3.707 6 C -0.209 4.209 7 C -0.038 4.038 8 C -0.205 4.205 9 C 0.128 3.872 10 N -0.557 5.557 11 C 0.512 3.488 12 O -0.572 6.572 13 N -0.701 5.701 14 C 0.152 3.848 15 H 0.066 0.934 16 C -0.111 4.111 17 C -0.102 4.102 18 C -0.083 4.083 19 H 0.069 0.931 20 C 0.153 3.847 21 N -0.744 5.744 22 C -0.247 4.247 23 H 0.074 0.926 24 C -0.077 4.077 25 N -0.970 5.970 26 Si 0.974 3.026 27 H -0.285 1.285 28 H -0.296 1.296 29 H -0.271 1.271 30 C -0.101 4.101 31 C -0.117 4.117 32 H 0.105 0.895 33 H 0.077 0.923 34 H 0.055 0.945 35 H 0.139 0.861 36 H 0.171 0.829 37 H 0.171 0.829 38 H 0.189 0.811 39 H 0.419 0.581 40 H 0.087 0.913 41 H 0.091 0.909 42 H 0.084 0.916 43 H 0.062 0.938 44 H 0.023 0.977 45 H 0.013 0.987 46 H 0.374 0.626 47 H 0.251 0.749 48 H 0.049 0.951 49 H 0.041 0.959 50 H 0.075 0.925 51 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.232 23.448 -28.620 37.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.019 3.981 3 H 0.144 0.856 4 O -0.213 6.213 5 C 0.116 3.884 6 C -0.229 4.229 7 C -0.063 4.063 8 C -0.224 4.224 9 C -0.027 4.027 10 N -0.282 5.282 11 C 0.298 3.702 12 O -0.451 6.451 13 N -0.354 5.354 14 C 0.048 3.952 15 H 0.084 0.916 16 C -0.148 4.148 17 C -0.140 4.140 18 C -0.102 4.102 19 H 0.088 0.912 20 C 0.026 3.974 21 N -0.387 5.387 22 C -0.379 4.379 23 H 0.092 0.908 24 C -0.269 4.269 25 N -0.621 5.621 26 Si 0.803 3.197 27 H -0.211 1.211 28 H -0.222 1.222 29 H -0.196 1.196 30 C -0.140 4.140 31 C -0.156 4.156 32 H 0.124 0.876 33 H 0.096 0.904 34 H 0.074 0.926 35 H 0.157 0.843 36 H 0.188 0.812 37 H 0.189 0.811 38 H 0.206 0.794 39 H 0.257 0.743 40 H 0.106 0.894 41 H 0.110 0.890 42 H 0.102 0.898 43 H 0.081 0.919 44 H 0.041 0.959 45 H 0.031 0.969 46 H 0.206 0.794 47 H 0.059 0.941 48 H 0.068 0.932 49 H 0.060 0.940 50 H 0.094 0.906 51 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 4.582 22.772 -27.720 36.166 hybrid contribution -0.280 -1.402 0.181 1.442 sum 4.302 21.369 -27.539 35.122 Atomic orbital electron populations 1.22154 0.90620 1.03345 1.05281 1.22133 0.96882 0.97710 0.81422 0.85567 1.86356 1.80596 1.35817 1.18566 1.20145 0.93066 0.88155 0.87060 1.21346 1.06744 1.02822 0.92012 1.21848 0.92940 0.93769 0.97728 1.22419 1.03166 0.96248 1.00602 1.23055 0.92126 1.00337 0.87181 1.67222 1.22585 1.04298 1.34048 1.20731 0.79764 0.84221 0.85507 1.90738 1.39309 1.27804 1.87224 1.45801 1.53412 1.32210 1.03990 1.20947 0.97268 0.92827 0.84203 0.91553 1.21726 1.03761 0.97208 0.92154 1.21431 0.98333 0.96285 0.97983 1.21243 1.00081 0.95601 0.93241 0.91234 1.20892 0.91820 0.89922 0.94722 1.42602 1.23513 1.40419 1.32178 1.19667 1.03498 1.11042 1.03645 0.90812 1.25568 0.97094 1.01608 1.02618 1.69819 1.12116 1.37364 1.42756 0.85131 0.77657 0.77702 0.79220 1.21148 1.22223 1.19593 1.21369 1.00485 0.97785 0.94335 1.21807 0.99888 0.97282 0.96597 0.87596 0.90393 0.92567 0.84264 0.81191 0.81150 0.79401 0.74301 0.89398 0.89023 0.89755 0.91885 0.95862 0.96949 0.79381 0.94059 0.93223 0.94016 0.90592 0.93936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.33 9.43 71.98 0.68 -1.65 16 2 C 0.08 1.57 2.91 29.84 0.09 1.65 16 3 H 0.13 2.14 6.98 -2.38 -0.02 2.12 16 4 O -0.31 -7.84 9.29 -70.95 -0.66 -8.50 16 5 C 0.29 6.18 7.45 84.79 0.63 6.82 16 6 C -0.21 -3.54 10.04 22.47 0.23 -3.31 16 7 C -0.04 -0.37 10.17 22.44 0.23 -0.14 16 8 C -0.20 -1.55 10.11 22.37 0.23 -1.32 16 9 C 0.13 1.35 11.17 84.63 0.95 2.29 16 10 N -0.56 -9.62 8.65 -308.94 -2.67 -12.29 16 11 C 0.51 12.80 7.20 87.66 0.63 13.43 16 12 O -0.57 -20.54 16.16 15.98 0.26 -20.29 16 13 N -0.70 -12.94 4.97 -442.52 -2.20 -15.13 16 14 C 0.15 3.44 2.46 44.99 0.11 3.55 16 15 H 0.07 1.85 7.58 -2.39 -0.02 1.84 16 16 C -0.11 -1.90 5.39 30.59 0.16 -1.74 16 17 C -0.10 -2.31 5.20 30.59 0.16 -2.15 16 18 C -0.08 -2.61 2.22 -10.80 -0.02 -2.63 16 19 H 0.07 2.22 8.14 -2.38 -0.02 2.21 16 20 C 0.15 6.25 5.65 86.38 0.49 6.74 16 21 N -0.74 -39.12 5.33 -343.45 -1.83 -40.95 16 22 C -0.25 -14.26 9.99 84.03 0.84 -13.42 16 23 H 0.07 4.10 7.83 -2.91 -0.02 4.08 16 24 C -0.08 -4.54 5.50 84.86 0.47 -4.07 16 25 N -0.97 -60.85 13.06 21.65 0.28 -60.56 16 26 Si 0.97 47.34 29.55 68.60 2.03 49.37 16 27 H -0.28 -13.46 7.11 99.48 0.71 -12.75 16 28 H -0.30 -14.44 7.11 99.48 0.71 -13.74 16 29 H -0.27 -12.52 7.11 99.48 0.71 -11.81 16 30 C -0.10 -3.42 5.08 30.59 0.16 -3.27 16 31 C -0.12 -3.26 5.49 30.60 0.17 -3.09 16 32 H 0.11 0.94 7.56 -2.39 -0.02 0.92 16 33 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 34 H 0.06 1.01 8.14 -2.38 -0.02 1.00 16 35 H 0.14 2.29 8.06 -2.91 -0.02 2.27 16 36 H 0.17 0.58 8.06 -2.91 -0.02 0.56 16 37 H 0.17 0.12 8.06 -2.91 -0.02 0.10 16 38 H 0.19 0.69 8.06 -2.90 -0.02 0.67 16 39 H 0.42 4.39 8.02 -92.71 -0.74 3.65 16 40 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 41 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 42 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 43 H 0.06 1.47 8.14 -2.38 -0.02 1.45 16 44 H 0.02 0.94 8.14 -2.39 -0.02 0.92 16 45 H 0.01 0.53 8.14 -2.39 -0.02 0.51 16 46 H 0.37 20.82 6.85 -92.71 -0.63 20.19 16 47 H 0.25 15.22 8.31 -92.71 -0.77 14.45 16 48 H 0.05 1.74 8.14 -2.38 -0.02 1.73 16 49 H 0.04 1.69 7.18 -2.39 -0.02 1.67 16 50 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 51 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 Total: -1.00 -81.18 414.05 0.94 -80.24 By element: Atomic # 1 Polarization: 30.88 SS G_CDS: -0.45 Total: 30.43 kcal Atomic # 6 Polarization: -8.49 SS G_CDS: 6.18 Total: -2.31 kcal Atomic # 7 Polarization: -122.52 SS G_CDS: -6.42 Total: -128.94 kcal Atomic # 8 Polarization: -28.39 SS G_CDS: -0.40 Total: -28.79 kcal Atomic # 14 Polarization: 47.34 SS G_CDS: 2.03 Total: 49.37 kcal Total: -81.18 0.94 -80.24 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700104716.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.392 kcal (2) G-P(sol) polarization free energy of solvation -81.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.789 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.942 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.239 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.847 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds