Wall clock time and date at job start Wed Apr 1 2020 05:20:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08995 * 109.47165 * 2 1 4 4 O 1.42896 * 109.46949 * 120.00945 * 2 1 3 5 5 C 1.35680 * 116.99616 * 269.99442 * 4 2 1 6 6 C 1.38922 * 119.68379 * 179.97438 * 5 4 2 7 7 C 1.38371 * 119.11026 * 179.97438 * 6 5 4 8 8 C 1.38831 * 118.48964 * 0.02562 * 7 6 5 9 9 C 1.38044 * 119.28591 * 359.97438 * 8 7 6 10 10 N 1.31966 * 120.83550 * 359.74410 * 9 8 7 11 11 C 1.50706 * 109.46635 * 240.00194 * 2 1 3 12 12 O 1.21277 * 120.00091 * 244.99686 * 11 2 1 13 13 N 1.34773 * 119.99819 * 65.00541 * 11 2 1 14 14 C 1.46504 * 120.00111 * 179.97438 * 13 11 2 15 15 H 1.09001 * 109.46891 * 325.00262 * 14 13 11 16 16 C 1.53006 * 109.46883 * 84.99828 * 14 13 11 17 17 C 1.52997 * 109.47127 * 180.02562 * 16 14 13 18 18 C 1.53000 * 109.47060 * 300.00449 * 17 16 14 19 19 H 1.09001 * 109.47194 * 299.99650 * 18 17 16 20 20 C 1.53001 * 109.46886 * 180.02562 * 18 17 16 21 21 N 1.46502 * 109.47203 * 175.00162 * 20 18 17 22 22 C 1.36935 * 119.99897 * 179.97438 * 21 20 18 23 23 H 1.07995 * 120.00414 * 359.97438 * 22 21 20 24 24 C 1.38818 * 119.99870 * 179.97438 * 22 21 20 25 25 N 1.31623 * 119.99958 * 359.97438 * 24 22 21 26 26 Si 1.86794 * 119.99988 * 179.97438 * 24 22 21 27 27 H 1.48505 * 109.47010 * 90.00032 * 26 24 22 28 28 H 1.48495 * 109.47312 * 209.99943 * 26 24 22 29 29 H 1.48500 * 109.47489 * 330.00261 * 26 24 22 30 30 C 1.52996 * 109.47328 * 60.00126 * 18 17 16 31 31 C 1.52997 * 109.47417 * 204.99914 * 14 13 11 32 32 H 1.09000 * 109.47004 * 299.99559 * 1 2 3 33 33 H 1.09000 * 109.46941 * 59.99289 * 1 2 3 34 34 H 1.08997 * 109.47724 * 179.97438 * 1 2 3 35 35 H 1.08002 * 120.44505 * 359.96682 * 6 5 4 36 36 H 1.08007 * 120.75679 * 180.02562 * 7 6 5 37 37 H 1.07993 * 120.35978 * 179.97438 * 8 7 6 38 38 H 1.07999 * 119.58316 * 179.97438 * 9 8 7 39 39 H 0.97003 * 120.00265 * 359.97438 * 13 11 2 40 40 H 1.08998 * 109.46505 * 59.99948 * 16 14 13 41 41 H 1.08996 * 109.46884 * 300.00829 * 16 14 13 42 42 H 1.09002 * 109.47153 * 180.02562 * 17 16 14 43 43 H 1.09001 * 109.46832 * 60.00321 * 17 16 14 44 44 H 1.09002 * 109.46989 * 294.99668 * 20 18 17 45 45 H 1.08994 * 109.47704 * 54.99481 * 20 18 17 46 46 H 0.97004 * 119.99876 * 359.97438 * 21 20 18 47 47 H 0.96992 * 120.00256 * 179.97438 * 25 24 22 48 48 H 1.08992 * 109.47554 * 59.99639 * 30 18 17 49 49 H 1.09004 * 109.47108 * 179.97438 * 30 18 17 50 50 H 1.09002 * 109.47045 * 60.00127 * 31 14 13 51 51 H 1.09001 * 109.47375 * 300.00052 * 31 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0063 -0.6738 1.1666 5 6 2.2117 0.0827 2.2741 6 6 2.6737 -0.5154 3.4398 7 6 2.8796 0.2674 4.5621 8 6 2.6142 1.6276 4.4785 9 6 2.1569 2.1544 3.2873 10 7 1.9754 1.3832 2.2320 11 6 2.0322 -0.7104 -1.2306 12 8 2.6529 -1.7466 -1.1217 13 7 1.7918 -0.1941 -2.4520 14 6 2.2805 -0.8843 -3.6483 15 1 3.2408 -1.3520 -3.4310 16 6 1.2730 -1.9578 -4.0650 17 6 1.7836 -2.6791 -5.3139 18 6 1.9540 -1.6704 -6.4516 19 1 0.9938 -1.2026 -6.6693 20 6 2.4640 -2.3919 -7.7007 21 7 2.5137 -1.4507 -8.8223 22 6 2.9424 -1.8732 -10.0522 23 1 3.2444 -2.9001 -10.1954 24 6 2.9890 -0.9814 -11.1150 25 7 2.6206 0.2701 -10.9407 26 14 3.5746 -1.5576 -12.7926 27 1 2.4152 -2.0496 -13.5795 28 1 4.2145 -0.4254 -13.5093 29 1 4.5595 -2.6560 -12.6229 30 6 2.9615 -0.5970 -6.0349 31 6 2.4503 0.1247 -4.7858 32 1 -0.3633 0.5138 0.8900 33 1 -0.3633 0.5139 -0.8899 34 1 -0.3634 -1.0276 -0.0005 35 1 2.8695 -1.5771 3.4697 36 1 3.2385 -0.1697 5.4821 37 1 2.7638 2.2666 5.3361 38 1 1.9485 3.2118 3.2171 39 1 1.2952 0.6346 -2.5391 40 1 0.3127 -1.4900 -4.2821 41 1 1.1520 -2.6766 -3.2546 42 1 1.0656 -3.4436 -5.6110 43 1 2.7438 -3.1469 -5.0962 44 1 3.4631 -2.7842 -7.5112 45 1 1.7914 -3.2138 -7.9457 46 1 2.2428 -0.5281 -8.6936 47 1 2.6535 0.8933 -11.6832 48 1 3.9216 -1.0648 -5.8173 49 1 3.0832 0.1213 -6.8457 50 1 3.1681 0.8894 -4.4889 51 1 1.4900 0.5924 -5.0030 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001700104717.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:20:24 Heat of formation + Delta-G solvation = -43.290292 kcal Electronic energy + Delta-G solvation = -29754.360575 eV Core-core repulsion = 25653.636587 eV Total energy + Delta-G solvation = -4100.723988 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.20152 -40.19182 -38.70028 -37.75150 -35.20821 -33.80460 -32.95995 -32.55204 -31.19012 -30.64866 -30.37391 -28.87414 -25.61839 -24.82582 -24.01544 -23.37459 -22.81915 -22.20816 -20.80606 -20.49184 -19.55301 -18.94977 -17.88230 -17.07199 -16.81836 -16.37407 -16.21552 -16.10573 -15.14698 -14.97574 -14.89008 -14.67572 -14.17828 -14.07361 -13.82874 -13.77328 -13.61533 -13.51473 -13.15664 -13.12197 -12.75762 -12.44590 -12.42038 -12.19937 -12.09616 -11.98205 -11.71714 -11.52804 -11.12774 -10.96601 -10.84450 -10.77144 -10.41065 -10.29767 -10.12282 -10.08555 -10.04846 -9.97472 -9.77810 -9.53549 -9.13325 -8.94104 -8.82742 -6.86578 -5.73314 -3.00805 0.70524 0.81114 2.20463 2.37499 3.20290 3.34166 3.45841 3.51049 3.52669 3.81084 4.31283 4.40766 4.51191 4.58668 4.62375 4.63430 4.75235 4.75623 4.79480 4.86087 5.10656 5.16684 5.26244 5.27841 5.30860 5.37695 5.49972 5.53978 5.60259 5.63540 5.65899 5.66562 5.73191 5.74234 5.95550 5.99742 6.06643 6.13916 6.24814 6.32400 6.33774 6.37336 6.47627 6.58833 6.73480 6.79455 6.90182 7.01515 7.26849 7.39022 7.73993 7.99175 8.46372 9.57382 10.16717 10.51497 11.49806 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.032312 B = 0.001561 C = 0.001535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 866.345358 B =17938.300122 C =18236.163150 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.072 3.928 3 H 0.114 0.886 4 O -0.276 6.276 5 C 0.324 3.676 6 C -0.188 4.188 7 C -0.040 4.040 8 C -0.215 4.215 9 C 0.140 3.860 10 N -0.543 5.543 11 C 0.515 3.485 12 O -0.520 6.520 13 N -0.720 5.720 14 C 0.146 3.854 15 H 0.088 0.912 16 C -0.125 4.125 17 C -0.108 4.108 18 C -0.095 4.095 19 H 0.070 0.930 20 C 0.156 3.844 21 N -0.732 5.732 22 C -0.237 4.237 23 H 0.069 0.931 24 C -0.016 4.016 25 N -0.935 5.935 26 Si 0.906 3.094 27 H -0.290 1.290 28 H -0.292 1.292 29 H -0.282 1.282 30 C -0.106 4.106 31 C -0.124 4.124 32 H 0.073 0.927 33 H 0.079 0.921 34 H 0.070 0.930 35 H 0.143 0.857 36 H 0.142 0.858 37 H 0.137 0.863 38 H 0.160 0.840 39 H 0.400 0.600 40 H 0.063 0.937 41 H 0.063 0.937 42 H 0.065 0.935 43 H 0.063 0.937 44 H 0.018 0.982 45 H 0.018 0.982 46 H 0.383 0.617 47 H 0.254 0.746 48 H 0.061 0.939 49 H 0.080 0.920 50 H 0.065 0.935 51 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.216 4.440 33.511 34.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.012 3.988 3 H 0.131 0.869 4 O -0.181 6.181 5 C 0.145 3.855 6 C -0.209 4.209 7 C -0.065 4.065 8 C -0.235 4.235 9 C -0.015 4.015 10 N -0.267 5.267 11 C 0.299 3.701 12 O -0.394 6.394 13 N -0.372 5.372 14 C 0.043 3.957 15 H 0.106 0.894 16 C -0.163 4.163 17 C -0.147 4.147 18 C -0.113 4.113 19 H 0.088 0.912 20 C 0.029 3.971 21 N -0.376 5.376 22 C -0.368 4.368 23 H 0.087 0.913 24 C -0.211 4.211 25 N -0.584 5.584 26 Si 0.738 3.262 27 H -0.218 1.218 28 H -0.218 1.218 29 H -0.208 1.208 30 C -0.144 4.144 31 C -0.162 4.162 32 H 0.092 0.908 33 H 0.098 0.902 34 H 0.089 0.911 35 H 0.161 0.839 36 H 0.159 0.841 37 H 0.155 0.845 38 H 0.177 0.823 39 H 0.234 0.766 40 H 0.082 0.918 41 H 0.081 0.919 42 H 0.083 0.917 43 H 0.082 0.918 44 H 0.036 0.964 45 H 0.035 0.965 46 H 0.217 0.783 47 H 0.064 0.936 48 H 0.080 0.920 49 H 0.099 0.901 50 H 0.084 0.916 51 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -3.940 3.630 32.620 33.057 hybrid contribution 0.186 0.314 -0.269 0.453 sum -3.754 3.944 32.352 32.807 Atomic orbital electron populations 1.22155 0.92269 1.03783 1.03854 1.22105 0.95843 0.98011 0.82842 0.86857 1.86398 1.79794 1.34340 1.17596 1.19909 0.91159 0.87399 0.87050 1.21120 1.05991 1.02374 0.91401 1.21445 0.93970 0.93446 0.97684 1.22000 1.05199 0.96242 1.00043 1.22435 0.92581 0.99241 0.87286 1.67256 1.22058 1.04709 1.32696 1.20185 0.80035 0.85572 0.84290 1.90747 1.39341 1.22920 1.86412 1.46036 1.58005 1.27807 1.05361 1.21140 0.98346 0.93218 0.83009 0.89355 1.21886 0.98585 0.97743 0.98126 1.21485 1.01455 0.97899 0.93831 1.21350 0.99223 0.95865 0.94896 0.91174 1.20690 0.97134 0.92623 0.86684 1.42382 1.79568 1.09672 1.05988 1.19258 1.35474 0.95116 0.86951 0.91263 1.24721 1.02531 0.95745 0.98128 1.69654 1.54489 1.03141 1.31127 0.86195 0.78249 0.77301 0.84501 1.21797 1.21826 1.20811 1.21492 0.98499 0.98320 0.96093 1.21848 1.01988 0.97527 0.94861 0.90806 0.90210 0.91133 0.83885 0.84057 0.84482 0.82271 0.76590 0.91837 0.91867 0.91675 0.91805 0.96372 0.96464 0.78284 0.93617 0.92002 0.90148 0.91630 0.91389 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.23 9.49 37.16 0.35 -0.87 16 2 C 0.07 0.71 2.90 -27.88 -0.08 0.63 16 3 H 0.11 1.01 6.98 -51.93 -0.36 0.65 16 4 O -0.28 -3.26 9.30 -38.60 -0.36 -3.62 16 5 C 0.32 3.28 7.46 -17.12 -0.13 3.15 16 6 C -0.19 -1.52 10.04 -39.28 -0.39 -1.92 16 7 C -0.04 -0.23 10.17 -39.31 -0.40 -0.63 16 8 C -0.21 -1.11 10.11 -39.43 -0.40 -1.51 16 9 C 0.14 0.90 11.18 -17.57 -0.20 0.70 16 10 N -0.54 -4.93 8.64 -13.33 -0.12 -5.04 16 11 C 0.51 6.21 7.14 -10.98 -0.08 6.13 16 12 O -0.52 -8.53 16.17 -14.30 -0.23 -8.76 16 13 N -0.72 -7.13 5.04 -53.80 -0.27 -7.40 16 14 C 0.15 1.73 2.45 -67.93 -0.17 1.56 16 15 H 0.09 1.23 7.58 -51.93 -0.39 0.83 16 16 C -0.12 -1.51 5.49 -26.73 -0.15 -1.66 16 17 C -0.11 -1.47 5.20 -26.73 -0.14 -1.60 16 18 C -0.09 -1.51 2.22 -90.62 -0.20 -1.71 16 19 H 0.07 1.16 8.14 -51.93 -0.42 0.73 16 20 C 0.16 3.18 5.65 -4.04 -0.02 3.16 16 21 N -0.73 -18.59 5.33 -59.91 -0.32 -18.91 16 22 C -0.24 -6.72 9.99 -15.06 -0.15 -6.87 16 23 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 24 C -0.02 -0.45 5.50 -17.43 -0.10 -0.55 16 25 N -0.93 -28.33 13.06 55.49 0.72 -27.60 16 26 Si 0.91 22.65 29.55 -169.99 -5.02 17.63 16 27 H -0.29 -7.23 7.11 56.52 0.40 -6.82 16 28 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 29 H -0.28 -6.89 7.11 56.52 0.40 -6.48 16 30 C -0.11 -1.60 5.08 -26.71 -0.14 -1.73 16 31 C -0.12 -1.46 5.39 -26.71 -0.14 -1.60 16 32 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.08 0.44 7.92 -51.93 -0.41 0.03 16 34 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 35 H 0.14 1.02 8.06 -52.49 -0.42 0.59 16 36 H 0.14 0.40 8.06 -52.48 -0.42 -0.02 16 37 H 0.14 0.35 8.06 -52.49 -0.42 -0.08 16 38 H 0.16 0.57 8.06 -52.49 -0.42 0.15 16 39 H 0.40 2.80 8.38 -40.82 -0.34 2.46 16 40 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 41 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 42 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 43 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 44 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 45 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 46 H 0.38 10.10 6.85 -40.82 -0.28 9.82 16 47 H 0.25 7.45 8.31 -40.82 -0.34 7.11 16 48 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 49 H 0.08 1.41 7.18 -51.93 -0.37 1.04 16 50 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 51 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 LS Contribution 414.85 15.07 6.25 6.25 Total: -1.00 -34.94 414.85 -10.34 -45.28 By element: Atomic # 1 Polarization: 15.97 SS G_CDS: -8.47 Total: 7.50 kcal Atomic # 6 Polarization: -2.79 SS G_CDS: -2.53 Total: -5.31 kcal Atomic # 7 Polarization: -58.98 SS G_CDS: 0.02 Total: -58.96 kcal Atomic # 8 Polarization: -11.79 SS G_CDS: -0.59 Total: -12.38 kcal Atomic # 14 Polarization: 22.65 SS G_CDS: -5.02 Total: 17.63 kcal Total LS contribution 6.25 Total: 6.25 kcal Total: -34.94 -10.34 -45.28 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700104717.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.990 kcal (2) G-P(sol) polarization free energy of solvation -34.938 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.948 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.342 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.280 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.290 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds