Wall clock time and date at job start Wed Apr 1 2020 05:20:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08995 * 109.47165 * 2 1 4 4 O 1.42896 * 109.46949 * 120.00945 * 2 1 3 5 5 C 1.35680 * 116.99616 * 269.99442 * 4 2 1 6 6 C 1.38922 * 119.68379 * 179.97438 * 5 4 2 7 7 C 1.38371 * 119.11026 * 179.97438 * 6 5 4 8 8 C 1.38831 * 118.48964 * 0.02562 * 7 6 5 9 9 C 1.38044 * 119.28591 * 359.97438 * 8 7 6 10 10 N 1.31966 * 120.83550 * 359.74410 * 9 8 7 11 11 C 1.50706 * 109.46635 * 240.00194 * 2 1 3 12 12 O 1.21277 * 120.00091 * 244.99686 * 11 2 1 13 13 N 1.34773 * 119.99819 * 65.00541 * 11 2 1 14 14 C 1.46504 * 120.00111 * 179.97438 * 13 11 2 15 15 H 1.09001 * 109.46891 * 325.00262 * 14 13 11 16 16 C 1.53006 * 109.46883 * 84.99828 * 14 13 11 17 17 C 1.52997 * 109.47127 * 180.02562 * 16 14 13 18 18 C 1.53000 * 109.47060 * 300.00449 * 17 16 14 19 19 H 1.09001 * 109.47194 * 299.99650 * 18 17 16 20 20 C 1.53001 * 109.46886 * 180.02562 * 18 17 16 21 21 N 1.46502 * 109.47203 * 175.00162 * 20 18 17 22 22 C 1.36935 * 119.99897 * 179.97438 * 21 20 18 23 23 H 1.07995 * 120.00414 * 359.97438 * 22 21 20 24 24 C 1.38818 * 119.99870 * 179.97438 * 22 21 20 25 25 N 1.31623 * 119.99958 * 359.97438 * 24 22 21 26 26 Si 1.86794 * 119.99988 * 179.97438 * 24 22 21 27 27 H 1.48505 * 109.47010 * 90.00032 * 26 24 22 28 28 H 1.48495 * 109.47312 * 209.99943 * 26 24 22 29 29 H 1.48500 * 109.47489 * 330.00261 * 26 24 22 30 30 C 1.52996 * 109.47328 * 60.00126 * 18 17 16 31 31 C 1.52997 * 109.47417 * 204.99914 * 14 13 11 32 32 H 1.09000 * 109.47004 * 299.99559 * 1 2 3 33 33 H 1.09000 * 109.46941 * 59.99289 * 1 2 3 34 34 H 1.08997 * 109.47724 * 179.97438 * 1 2 3 35 35 H 1.08002 * 120.44505 * 359.96682 * 6 5 4 36 36 H 1.08007 * 120.75679 * 180.02562 * 7 6 5 37 37 H 1.07993 * 120.35978 * 179.97438 * 8 7 6 38 38 H 1.07999 * 119.58316 * 179.97438 * 9 8 7 39 39 H 0.97003 * 120.00265 * 359.97438 * 13 11 2 40 40 H 1.08998 * 109.46505 * 59.99948 * 16 14 13 41 41 H 1.08996 * 109.46884 * 300.00829 * 16 14 13 42 42 H 1.09002 * 109.47153 * 180.02562 * 17 16 14 43 43 H 1.09001 * 109.46832 * 60.00321 * 17 16 14 44 44 H 1.09002 * 109.46989 * 294.99668 * 20 18 17 45 45 H 1.08994 * 109.47704 * 54.99481 * 20 18 17 46 46 H 0.97004 * 119.99876 * 359.97438 * 21 20 18 47 47 H 0.96992 * 120.00256 * 179.97438 * 25 24 22 48 48 H 1.08992 * 109.47554 * 59.99639 * 30 18 17 49 49 H 1.09004 * 109.47108 * 179.97438 * 30 18 17 50 50 H 1.09002 * 109.47045 * 60.00127 * 31 14 13 51 51 H 1.09001 * 109.47375 * 300.00052 * 31 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0063 -0.6738 1.1666 5 6 2.2117 0.0827 2.2741 6 6 2.6737 -0.5154 3.4398 7 6 2.8796 0.2674 4.5621 8 6 2.6142 1.6276 4.4785 9 6 2.1569 2.1544 3.2873 10 7 1.9754 1.3832 2.2320 11 6 2.0322 -0.7104 -1.2306 12 8 2.6529 -1.7466 -1.1217 13 7 1.7918 -0.1941 -2.4520 14 6 2.2805 -0.8843 -3.6483 15 1 3.2408 -1.3520 -3.4310 16 6 1.2730 -1.9578 -4.0650 17 6 1.7836 -2.6791 -5.3139 18 6 1.9540 -1.6704 -6.4516 19 1 0.9938 -1.2026 -6.6693 20 6 2.4640 -2.3919 -7.7007 21 7 2.5137 -1.4507 -8.8223 22 6 2.9424 -1.8732 -10.0522 23 1 3.2444 -2.9001 -10.1954 24 6 2.9890 -0.9814 -11.1150 25 7 2.6206 0.2701 -10.9407 26 14 3.5746 -1.5576 -12.7926 27 1 2.4152 -2.0496 -13.5795 28 1 4.2145 -0.4254 -13.5093 29 1 4.5595 -2.6560 -12.6229 30 6 2.9615 -0.5970 -6.0349 31 6 2.4503 0.1247 -4.7858 32 1 -0.3633 0.5138 0.8900 33 1 -0.3633 0.5139 -0.8899 34 1 -0.3634 -1.0276 -0.0005 35 1 2.8695 -1.5771 3.4697 36 1 3.2385 -0.1697 5.4821 37 1 2.7638 2.2666 5.3361 38 1 1.9485 3.2118 3.2171 39 1 1.2952 0.6346 -2.5391 40 1 0.3127 -1.4900 -4.2821 41 1 1.1520 -2.6766 -3.2546 42 1 1.0656 -3.4436 -5.6110 43 1 2.7438 -3.1469 -5.0962 44 1 3.4631 -2.7842 -7.5112 45 1 1.7914 -3.2138 -7.9457 46 1 2.2428 -0.5281 -8.6936 47 1 2.6535 0.8933 -11.6832 48 1 3.9216 -1.0648 -5.8173 49 1 3.0832 0.1213 -6.8457 50 1 3.1681 0.8894 -4.4889 51 1 1.4900 0.5924 -5.0030 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700104717.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:20:23 Heat of formation + Delta-G solvation = -66.423218 kcal Electronic energy + Delta-G solvation = -29755.363694 eV Core-core repulsion = 25653.636587 eV Total energy + Delta-G solvation = -4101.727107 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.87655 -41.05676 -39.69001 -38.64049 -36.71260 -35.25641 -33.67441 -33.39492 -32.70311 -31.74106 -31.05314 -30.27214 -26.95710 -25.87597 -24.80862 -24.42814 -23.76219 -23.48513 -22.02418 -21.46592 -20.76017 -19.59306 -19.15611 -18.67232 -17.52490 -17.12827 -16.96370 -16.74808 -16.66295 -16.04728 -15.96408 -15.58764 -15.44784 -15.29270 -15.13054 -14.79666 -14.74754 -14.44160 -14.22322 -14.00299 -13.83326 -13.42796 -13.39483 -13.25206 -13.11015 -12.93103 -12.87419 -12.78888 -12.72548 -12.22696 -12.17043 -12.13764 -12.03194 -11.84252 -11.47607 -11.31601 -11.15817 -10.91730 -10.89420 -10.79070 -10.59460 -10.11830 -9.50122 -8.96902 -7.94307 -5.22049 0.19919 0.31882 1.43848 1.46842 1.47378 1.48840 1.57353 2.43755 2.56732 2.82383 3.28087 3.38911 3.50940 3.69532 3.76385 3.86437 3.89472 3.97435 4.04968 4.06382 4.12041 4.21370 4.23054 4.37008 4.41726 4.44788 4.52257 4.56885 4.58833 4.65470 4.68286 4.79931 4.80752 4.93426 5.04071 5.06421 5.08161 5.09812 5.12487 5.20703 5.22080 5.29544 5.31613 5.43136 5.47868 5.52807 5.53948 5.61220 6.16525 6.28680 6.45715 6.84643 7.11931 7.35190 8.12027 8.36691 9.29107 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.032312 B = 0.001561 C = 0.001535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 866.345358 B =17938.300122 C =18236.163150 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.077 3.923 3 H 0.122 0.878 4 O -0.304 6.304 5 C 0.293 3.707 6 C -0.207 4.207 7 C -0.038 4.038 8 C -0.205 4.205 9 C 0.127 3.873 10 N -0.559 5.559 11 C 0.514 3.486 12 O -0.569 6.569 13 N -0.703 5.703 14 C 0.152 3.848 15 H 0.066 0.934 16 C -0.116 4.116 17 C -0.101 4.101 18 C -0.082 4.082 19 H 0.069 0.931 20 C 0.153 3.847 21 N -0.742 5.742 22 C -0.248 4.248 23 H 0.071 0.929 24 C -0.074 4.074 25 N -0.967 5.967 26 Si 0.972 3.028 27 H -0.286 1.286 28 H -0.294 1.294 29 H -0.272 1.272 30 C -0.103 4.103 31 C -0.112 4.112 32 H 0.076 0.924 33 H 0.103 0.897 34 H 0.059 0.941 35 H 0.142 0.858 36 H 0.171 0.829 37 H 0.170 0.830 38 H 0.187 0.813 39 H 0.418 0.582 40 H 0.079 0.921 41 H 0.056 0.944 42 H 0.071 0.929 43 H 0.058 0.942 44 H 0.014 0.986 45 H 0.017 0.983 46 H 0.376 0.624 47 H 0.251 0.749 48 H 0.054 0.946 49 H 0.053 0.947 50 H 0.077 0.923 51 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.842 5.526 35.283 36.040 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.017 3.983 3 H 0.140 0.860 4 O -0.211 6.211 5 C 0.115 3.885 6 C -0.227 4.227 7 C -0.063 4.063 8 C -0.225 4.225 9 C -0.028 4.028 10 N -0.283 5.283 11 C 0.300 3.700 12 O -0.448 6.448 13 N -0.356 5.356 14 C 0.048 3.952 15 H 0.084 0.916 16 C -0.155 4.155 17 C -0.140 4.140 18 C -0.101 4.101 19 H 0.088 0.912 20 C 0.027 3.973 21 N -0.385 5.385 22 C -0.380 4.380 23 H 0.089 0.911 24 C -0.266 4.266 25 N -0.618 5.618 26 Si 0.801 3.199 27 H -0.214 1.214 28 H -0.220 1.220 29 H -0.197 1.197 30 C -0.141 4.141 31 C -0.150 4.150 32 H 0.095 0.905 33 H 0.122 0.878 34 H 0.078 0.922 35 H 0.160 0.840 36 H 0.189 0.811 37 H 0.188 0.812 38 H 0.204 0.796 39 H 0.255 0.745 40 H 0.098 0.902 41 H 0.075 0.925 42 H 0.090 0.910 43 H 0.077 0.923 44 H 0.032 0.968 45 H 0.035 0.965 46 H 0.209 0.791 47 H 0.060 0.940 48 H 0.073 0.927 49 H 0.072 0.928 50 H 0.095 0.905 51 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -4.586 4.724 34.414 35.038 hybrid contribution 0.415 -0.011 -0.709 0.822 sum -4.171 4.713 33.705 34.288 Atomic orbital electron populations 1.22131 0.90465 1.03491 1.05154 1.22130 0.97037 0.97607 0.81509 0.85999 1.86349 1.80602 1.35690 1.18488 1.20156 0.93108 0.88096 0.87109 1.21348 1.06660 1.02852 0.91888 1.21855 0.92906 0.93700 0.97828 1.22413 1.03157 0.96342 1.00546 1.23033 0.92240 1.00312 0.87208 1.67222 1.22611 1.04422 1.34037 1.20660 0.79077 0.84951 0.85297 1.90721 1.41677 1.25233 1.87134 1.45830 1.57388 1.28087 1.04267 1.20930 0.97455 0.93240 0.83587 0.91555 1.21797 0.99206 0.97570 0.96919 1.21408 1.01589 0.97473 0.93522 1.21221 0.99004 0.96230 0.93662 0.91212 1.20858 0.96984 0.92259 0.87210 1.42552 1.79320 1.10088 1.06505 1.19642 1.34809 0.95259 0.88259 0.91069 1.25525 1.03371 0.95959 1.01739 1.69802 1.55906 1.04142 1.31928 0.85159 0.77848 0.76882 0.79989 1.21356 1.22022 1.19733 1.21391 0.98222 0.97643 0.96836 1.21715 1.03033 0.97244 0.92964 0.90507 0.87815 0.92171 0.84030 0.81119 0.81229 0.79603 0.74475 0.90222 0.92501 0.91026 0.92274 0.96824 0.96544 0.79139 0.93995 0.92732 0.92821 0.90469 0.89682 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.17 9.49 71.98 0.68 -1.49 16 2 C 0.08 1.50 2.90 29.85 0.09 1.58 16 3 H 0.12 2.10 6.98 -2.39 -0.02 2.08 16 4 O -0.30 -7.46 9.30 -70.99 -0.66 -8.12 16 5 C 0.29 6.00 7.46 84.79 0.63 6.63 16 6 C -0.21 -3.33 10.04 22.47 0.23 -3.11 16 7 C -0.04 -0.35 10.17 22.44 0.23 -0.13 16 8 C -0.20 -1.55 10.11 22.37 0.23 -1.32 16 9 C 0.13 1.37 11.18 84.63 0.95 2.31 16 10 N -0.56 -9.67 8.64 -308.95 -2.67 -12.34 16 11 C 0.51 12.35 7.14 87.66 0.63 12.97 16 12 O -0.57 -19.30 16.17 15.97 0.26 -19.04 16 13 N -0.70 -12.99 5.04 -442.52 -2.23 -15.22 16 14 C 0.15 3.44 2.45 44.99 0.11 3.55 16 15 H 0.07 1.85 7.58 -2.39 -0.02 1.83 16 16 C -0.12 -2.67 5.49 30.60 0.17 -2.51 16 17 C -0.10 -2.67 5.20 30.59 0.16 -2.51 16 18 C -0.08 -2.60 2.22 -10.79 -0.02 -2.62 16 19 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 20 C 0.15 6.30 5.65 86.38 0.49 6.79 16 21 N -0.74 -38.22 5.33 -343.45 -1.83 -40.05 16 22 C -0.25 -14.16 9.99 84.04 0.84 -13.32 16 23 H 0.07 3.95 7.83 -2.91 -0.02 3.93 16 24 C -0.07 -4.28 5.50 84.86 0.47 -3.81 16 25 N -0.97 -59.24 13.06 21.65 0.28 -58.96 16 26 Si 0.97 46.71 29.55 68.60 2.03 48.74 16 27 H -0.29 -13.49 7.11 99.48 0.71 -12.79 16 28 H -0.29 -14.10 7.11 99.48 0.71 -13.39 16 29 H -0.27 -12.49 7.11 99.48 0.71 -11.79 16 30 C -0.10 -3.10 5.08 30.61 0.16 -2.94 16 31 C -0.11 -2.47 5.39 30.61 0.17 -2.30 16 32 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 33 H 0.10 0.90 7.92 -2.39 -0.02 0.88 16 34 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 35 H 0.14 2.14 8.06 -2.91 -0.02 2.12 16 36 H 0.17 0.48 8.06 -2.91 -0.02 0.46 16 37 H 0.17 0.14 8.06 -2.91 -0.02 0.12 16 38 H 0.19 0.80 8.06 -2.91 -0.02 0.78 16 39 H 0.42 4.81 8.38 -92.71 -0.78 4.04 16 40 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 41 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 42 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 43 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 44 H 0.01 0.58 8.14 -2.39 -0.02 0.56 16 45 H 0.02 0.69 8.14 -2.39 -0.02 0.67 16 46 H 0.38 20.23 6.85 -92.71 -0.64 19.60 16 47 H 0.25 14.89 8.31 -92.71 -0.77 14.12 16 48 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 49 H 0.05 1.92 7.18 -2.38 -0.02 1.90 16 50 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 51 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 Total: -1.00 -77.56 414.85 0.88 -76.68 By element: Atomic # 1 Polarization: 31.01 SS G_CDS: -0.48 Total: 30.52 kcal Atomic # 6 Polarization: -8.38 SS G_CDS: 6.18 Total: -2.20 kcal Atomic # 7 Polarization: -120.13 SS G_CDS: -6.45 Total: -126.58 kcal Atomic # 8 Polarization: -26.76 SS G_CDS: -0.40 Total: -27.16 kcal Atomic # 14 Polarization: 46.71 SS G_CDS: 2.03 Total: 48.74 kcal Total: -77.56 0.88 -76.68 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700104717.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.260 kcal (2) G-P(sol) polarization free energy of solvation -77.559 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.300 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.876 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.683 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds